Ncaph2 (non-SMC condensin II complex, subunit H2) - Rat Genome Database

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Gene: Ncaph2 (non-SMC condensin II complex, subunit H2) Mus musculus
Analyze
Symbol: Ncaph2
Name: non-SMC condensin II complex, subunit H2
RGD ID: 1619218
MGI Page MGI
Description: Predicted to enable chromatin binding activity. Involved in meiotic chromosome condensation and nuclear division. Acts upstream of or within T cell differentiation in thymus. Located in condensed chromosome. Part of condensin complex. Is active in chromosome and nucleus. Is expressed in embryo. Orthologous to human NCAPH2 (non-SMC condensin II complex subunit H2).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 0610010J20Rik; 2610524G04Rik; AI255179; condensin-2 complex subunit H2; D15Ertd785; D15Ertd785e; Kleisin beta; kleisin-beta; MGC6766; non-SMC condensin II complex subunit H2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7535   Gm8363  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,239,902 - 89,257,053 (+)NCBIGRCm39mm39
GRCm39 Ensembl1589,239,922 - 89,257,029 (+)Ensembl
GRCm381589,355,719 - 89,372,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,355,719 - 89,372,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv371589,186,153 - 89,203,259 (+)NCBIGRCm37mm9NCBIm37
MGSCv361589,183,539 - 89,200,593 (+)NCBImm8
Celera1591,484,861 - 91,501,969 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17640884   PMID:17967808   PMID:18287559   PMID:18397266   PMID:18799693   PMID:21169989   PMID:21267068   PMID:21677750   PMID:21795393  
PMID:21873635   PMID:22333158   PMID:22922362   PMID:25474630   PMID:25961503   PMID:27737959   PMID:27737961  


Genomics

Comparative Map Data
Ncaph2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,239,902 - 89,257,053 (+)NCBIGRCm39mm39
GRCm39 Ensembl1589,239,922 - 89,257,029 (+)Ensembl
GRCm381589,355,719 - 89,372,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,355,719 - 89,372,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv371589,186,153 - 89,203,259 (+)NCBIGRCm37mm9NCBIm37
MGSCv361589,183,539 - 89,200,593 (+)NCBImm8
Celera1591,484,861 - 91,501,969 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.84NCBI
NCAPH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2250,508,224 - 50,524,780 (+)EnsemblGRCh38hg38GRCh38
GRCh382250,508,218 - 50,524,780 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372250,946,653 - 50,963,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,293,511 - 49,308,782 (+)NCBINCBI36hg18NCBI36
Celera2234,822,672 - 34,839,236 (+)NCBI
Cytogenetic Map22q13.33NCBI
HuRef2233,837,777 - 33,854,227 (+)NCBIHuRef
CHM1_12250,905,383 - 50,921,946 (+)NCBICHM1_1
Ncaph2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27120,422,926 - 120,439,942 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7120,422,956 - 120,439,938 (+)Ensembl
Rnor_6.07130,326,597 - 130,343,655 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,326,600 - 130,342,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,011,904 - 130,028,836 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,650,768 - 127,666,461 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7116,890,045 - 116,911,675 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ncaph2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541333,492,348 - 33,503,804 (+)NCBIChiLan1.0ChiLan1.0
NCAPH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12249,872,496 - 49,881,027 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,873,223 - 49,881,027 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02230,754,994 - 30,771,103 (+)NCBIMhudiblu_PPA_v0panPan3
NCAPH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,790,137 - 16,801,851 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,741,761 - 16,801,824 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,767,846 - 16,779,558 (-)NCBI
ROS_Cfam_1.01017,516,609 - 17,528,431 (-)NCBI
UMICH_Zoey_3.11017,240,896 - 17,252,608 (-)NCBI
UNSW_CanFamBas_1.01017,563,917 - 17,575,625 (-)NCBI
UU_Cfam_GSD_1.01017,696,140 - 17,707,852 (-)NCBI
Ncaph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945320,877 - 332,110 (-)NCBI
SpeTri2.0NW_004936629320,885 - 327,290 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAPH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5221,466 - 233,475 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15222,784 - 233,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,546,808 - 110,557,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAPH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,978,771 - 32,995,055 (+)NCBI
ChlSab1.1 Ensembl1932,978,562 - 32,997,160 (+)Ensembl
Vero_WHO_p1.0NW_02366604592,346,255 - 92,356,666 (-)NCBI
Ncaph2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624752257,885 - 268,971 (-)NCBI

Position Markers
RH136025  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,372,063 - 89,372,248UniSTSGRCm38
MGSCv371589,202,494 - 89,202,679UniSTSGRCm37
Celera1591,501,204 - 91,501,389UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E3UniSTS
cM Map1551.6UniSTS
cM Map1549.9UniSTS
RH128722  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,371,377 - 89,371,578UniSTSGRCm38
MGSCv371589,201,808 - 89,202,009UniSTSGRCm37
Celera1591,500,518 - 91,500,719UniSTS
Cytogenetic Map15E3UniSTS
cM Map1549.9UniSTS
D15Ertd785e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,372,585 - 89,372,817UniSTSGRCm38
MGSCv371589,203,016 - 89,203,248UniSTSGRCm37
Celera1591,501,726 - 91,501,958UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E3UniSTS
cM Map1549.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154230000095600000Mouse
1300644Fob3_mF-line obesity QTL 3 (mouse)11.3Not determined154414443889377036Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154850000098500000Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155370000089700000Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155724515691245304Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155724515691245304Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156170000095700000Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156327970297279794Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156492762598927745Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156545237799456827Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156564117599641298Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567386497101386646Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
1301472Pain1_mpain 1 (mouse)Not determined157544899790928982Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78716903102993272Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578716903102993272Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579265530104043685Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined80011059104043685Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580415753104043685Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580987052104043685Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580987052104043685Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82717593104043685Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585988005104043685Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585988005104043685Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585988005104043685Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585993114104043685Mouse
1301764Chab4_mcholesterol absorption 4 (mouse)Not determined1586751919104043685Mouse
1558845Alprf_malcohol preference (mouse)Not determined158746507090390365Mouse
12738413Lfibq10_mliver fibrosis QTL 10 (mouse)158795788490043083Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4232
Count of miRNA genes:797
Interacting mature miRNAs:1047
Transcripts:ENSMUST00000036987, ENSMUST00000074552, ENSMUST00000088717, ENSMUST00000123889, ENSMUST00000134900, ENSMUST00000136638, ENSMUST00000140665, ENSMUST00000141643, ENSMUST00000145259, ENSMUST00000145793, ENSMUST00000147207, ENSMUST00000147733, ENSMUST00000151523
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001115132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006521150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001781551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB359460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE981994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY122984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY128592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000036987   ⟹   ENSMUSP00000036900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,239,922 - 89,257,029 (+)Ensembl
GRCm38.p6 Ensembl1589,355,719 - 89,372,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000074552   ⟹   ENSMUSP00000074139
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,239,939 - 89,257,029 (+)Ensembl
GRCm38.p6 Ensembl1589,355,736 - 89,372,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000088717   ⟹   ENSMUSP00000086095
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,239,939 - 89,257,029 (+)Ensembl
GRCm38.p6 Ensembl1589,355,736 - 89,372,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123889
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,240,024 - 89,248,107 (+)Ensembl
GRCm38.p6 Ensembl1589,355,821 - 89,363,904 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,253,895 - 89,254,878 (+)Ensembl
GRCm38.p6 Ensembl1589,369,692 - 89,370,675 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,501 - 89,255,135 (+)Ensembl
GRCm38.p6 Ensembl1589,370,298 - 89,370,932 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140665
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,850 - 89,255,727 (+)Ensembl
GRCm38.p6 Ensembl1589,370,647 - 89,371,524 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141643
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,240,008 - 89,248,083 (+)Ensembl
GRCm38.p6 Ensembl1589,355,805 - 89,363,880 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145259   ⟹   ENSMUSP00000122118
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,239,966 - 89,257,029 (+)Ensembl
GRCm38.p6 Ensembl1589,355,763 - 89,372,826 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145793
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,240,117 - 89,249,534 (+)Ensembl
GRCm38.p6 Ensembl1589,355,914 - 89,365,331 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147207
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,081 - 89,255,443 (+)Ensembl
GRCm38.p6 Ensembl1589,369,878 - 89,371,240 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147733
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,956 - 89,255,766 (+)Ensembl
GRCm38.p6 Ensembl1589,370,753 - 89,371,563 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151523
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,254,236 - 89,255,392 (+)Ensembl
GRCm38.p6 Ensembl1589,370,033 - 89,371,189 (+)Ensembl
RefSeq Acc Id: NM_001115132   ⟹   NP_001108604
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,922 - 89,257,053 (+)NCBI
GRCm381589,355,719 - 89,372,850 (+)NCBI
MGSCv371589,186,153 - 89,203,259 (+)RGD
Celera1591,484,858 - 91,501,991 (+)NCBI
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001271600   ⟹   NP_001258529
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,922 - 89,257,053 (+)NCBI
GRCm381589,355,719 - 89,372,850 (+)NCBI
Celera1591,484,858 - 91,501,991 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271601   ⟹   NP_001258530
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,922 - 89,257,053 (+)NCBI
GRCm381589,355,719 - 89,372,850 (+)NCBI
Celera1591,484,858 - 91,501,991 (+)NCBI
Sequence:
RefSeq Acc Id: NR_073376
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,922 - 89,257,053 (+)NCBI
GRCm381589,355,719 - 89,372,850 (+)NCBI
Celera1591,484,858 - 91,501,991 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006521149   ⟹   XP_006521212
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,925 - 89,257,030 (+)NCBI
GRCm381589,355,727 - 89,372,827 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006521150   ⟹   XP_006521213
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,902 - 89,257,030 (+)NCBI
GRCm381589,355,724 - 89,372,827 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781550
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,920 - 89,257,030 (+)NCBI
GRCm381589,355,727 - 89,372,827 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781551
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,920 - 89,255,440 (+)NCBI
GRCm381589,355,727 - 89,371,237 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004938851
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,239,925 - 89,257,030 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001108604   ⟸   NM_001115132
- Peptide Label: isoform a
- UniProtKB: Q8BSP2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258530   ⟸   NM_001271601
- Peptide Label: isoform c
- UniProtKB: Q8BSP2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258529   ⟸   NM_001271600
- Peptide Label: isoform d
- UniProtKB: E9PY48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006521213   ⟸   XM_006521150
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006521212   ⟸   XM_006521149
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000122118   ⟸   ENSMUST00000145259
RefSeq Acc Id: ENSMUSP00000074139   ⟸   ENSMUST00000074552
RefSeq Acc Id: ENSMUSP00000086095   ⟸   ENSMUST00000088717
RefSeq Acc Id: ENSMUSP00000036900   ⟸   ENSMUST00000036987
Protein Domains
CNDH2_C   CNDH2_M   CNDH2_N

Promoters
RGD ID:6826599
Promoter ID:MM_KWN:19422
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000036987,   NM_001115132,   NM_025795,   NM_178919,   OTTMUST00000060166,   OTTMUST00000060169,   OTTMUST00000060170,   OTTMUST00000060171,   UC007XGE.1,   UC007XGF.1,   UC007XGJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361589,184,141 - 89,186,872 (-)MPROMDB
RGD ID:6826258
Promoter ID:MM_KWN:19423
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:OTTMUST00000060172,   OTTMUST00000060173,   OTTMUST00000060174,   OTTMUST00000060185,   OTTMUST00000060186,   OTTMUST00000060189
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361589,199,971 - 89,201,162 (+)MPROMDB
RGD ID:8684726
Promoter ID:EPDNEW_M20394
Type:initiation region
Name:Ncaph2_1
Description:Mus musculus non-SMC condensin II complex, subunit H2 , transcriptvariant 2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381589,355,772 - 89,355,832EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1289164 AgrOrtholog
Ensembl Genes ENSMUSG00000008690 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000036900 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000074139 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000086095 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000122118 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000036987 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000074552 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000088717 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000145259 ENTREZGENE, UniProtKB/TrEMBL
InterPro CNDH2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  H2_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  H2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ncaph2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:52683 UniProtKB/Swiss-Prot
MGD MGI:1289164 ENTREZGENE
NCBI Gene 52683 ENTREZGENE
PANTHER PTHR14324 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CNDH2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNDH2_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNDH2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ncaph2 PhenoGen
UniProt CNDH2_MOUSE UniProtKB/Swiss-Prot
  D6RGR7_MOUSE UniProtKB/TrEMBL
  E9PY48 ENTREZGENE, UniProtKB/TrEMBL
  Q3U5L1_MOUSE UniProtKB/TrEMBL
  Q8BSP2 ENTREZGENE
UniProt Secondary Q3TNI4 UniProtKB/Swiss-Prot
  Q8C2N3 UniProtKB/Swiss-Prot
  Q8C3K9 UniProtKB/Swiss-Prot
  Q8C4X8 UniProtKB/Swiss-Prot
  Q8CAZ3 UniProtKB/Swiss-Prot
  Q99L21 UniProtKB/Swiss-Prot
  Q9CT99 UniProtKB/Swiss-Prot