Klrc1 (killer cell lectin-like receptor subfamily C, member 1) - Rat Genome Database

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Gene: Klrc1 (killer cell lectin-like receptor subfamily C, member 1) Mus musculus
Analyze
Symbol: Klrc1
Name: killer cell lectin-like receptor subfamily C, member 1
RGD ID: 1332552
MGI Page MGI
Description: Predicted to enable HLA-E specific inhibitory MHC class Ib receptor activity and MHC class I protein complex binding activity. Predicted to be involved in positive regulation of natural killer cell mediated cytotoxicity and stimulatory C-type lectin receptor signaling pathway. Located in external side of plasma membrane. Is expressed in liver. Orthologous to several human genes including KLRC1 (killer cell lectin like receptor C1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD159; CD159a; Cluster of Differentiation 159a; NKG; NKG2; NKG2-A/NKG2-B type II integral membrane protein; NKG2A; NKG2B
RGD Orthologs
Human
Rat
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,642,978 - 129,659,815 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6129,642,978 - 129,655,936 (-)EnsemblGRCm39 Ensembl
GRCm386129,666,015 - 129,682,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,666,015 - 129,678,973 (-)EnsemblGRCm38mm10GRCm38
MGSCv376129,624,877 - 129,628,928 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366129,640,552 - 129,644,603 (-)NCBIMGSCv36mm8
Celera6131,386,448 - 131,390,507 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map663.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phenotypic and functional changes of cytotoxic CD56pos natural T cells determine outcome of acute hepatitis C virus infection. Golden-Mason L, etal., J Virol. 2007 Sep;81(17):9292-8. doi: 10.1128/JVI.00834-07. Epub 2007 Jun 6.
2. Association of NKG2A with treatment for chronic hepatitis C virus infection. Harrison RJ, etal., Clin Exp Immunol. 2010 Aug;161(2):306-14. doi: 10.1111/j.1365-2249.2010.04169.x. Epub 2010 Jun 9.
3. Direct antiviral agents upregulate natural killer cell potential activity in chronic hepatitis C patients. Jiang HJ, etal., Clin Exp Med. 2019 Aug;19(3):299-308. doi: 10.1007/s10238-019-00564-9. Epub 2019 Jun 20.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Surface expression and cytolytic function of natural killer cell receptors is altered in chronic hepatitis C. Nattermann J, etal., Gut. 2006 Jun;55(6):869-77. doi: 10.1136/gut.2005.076463. Epub 2005 Dec 1.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Molecular cloning of KLRI1 and KLRI2, a novel pair of lectin-like natural killer-cell receptors with opposing signalling motifs. Saether PC, etal., Immunogenetics 2005 Feb;56(11):833-9. Epub 2005 Jan 14.
12. Frequency and role of NKp46 and NKG2A in hepatitis B virus infection. Yoshioka T, etal., PLoS One. 2017 Mar 22;12(3):e0174103. doi: 10.1371/journal.pone.0174103. eCollection 2017.
Additional References at PubMed
PMID:9815261   PMID:10092077   PMID:10349636   PMID:10369936   PMID:10601355   PMID:10671213   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11782535   PMID:12477932   PMID:14707119  
PMID:15746081   PMID:15827137   PMID:16141072   PMID:16141073   PMID:16237464   PMID:16670321   PMID:17509909   PMID:17878358   PMID:18096998   PMID:18298548   PMID:18448674   PMID:19047627  
PMID:20124099   PMID:21084671   PMID:21151939   PMID:21346231   PMID:21540458   PMID:21873635   PMID:22131332   PMID:23340823   PMID:23390293   PMID:23610400   PMID:25251060   PMID:26680205  
PMID:27435504   PMID:28474506   PMID:29186689   PMID:30535636   PMID:30860984   PMID:31676749   PMID:33887202   PMID:35840162   PMID:37675109   PMID:38048225   PMID:38355793  


Genomics

Comparative Map Data
Klrc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396129,642,978 - 129,659,815 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6129,642,978 - 129,655,936 (-)EnsemblGRCm39 Ensembl
GRCm386129,666,015 - 129,682,852 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6129,666,015 - 129,678,973 (-)EnsemblGRCm38mm10GRCm38
MGSCv376129,624,877 - 129,628,928 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366129,640,552 - 129,644,603 (-)NCBIMGSCv36mm8
Celera6131,386,448 - 131,390,507 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map663.44NCBI
KLRC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381210,442,264 - 10,454,685 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1210,442,264 - 10,454,685 (-)EnsemblGRCh38hg38GRCh38
GRCh371210,594,863 - 10,607,284 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,489,894 - 10,498,251 (-)NCBINCBI36Build 36hg18NCBI36
Build 341210,489,900 - 10,498,251NCBI
Celera1215,745,049 - 15,753,642 (-)NCBICelera
Cytogenetic Map12p13.2NCBI
HuRef1210,325,626 - 10,334,218 (-)NCBIHuRef
CHM1_11210,568,114 - 10,576,714 (-)NCBICHM1_1
T2T-CHM13v2.01210,309,110 - 10,326,059 (-)NCBIT2T-CHM13v2.0
Klrc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84164,828,163 - 164,838,446 (-)NCBIGRCr8
mRatBN7.24163,142,142 - 163,152,425 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4163,147,189 - 163,152,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4169,376,954 - 169,387,239 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04165,159,913 - 165,170,202 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04163,793,961 - 163,804,246 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04163,453,435 - 163,463,718 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4163,458,528 - 163,463,718 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04212,069,326 - 212,089,511 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44166,976,056 - 166,986,568 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14167,220,992 - 167,231,491 (-)NCBI
Celera4151,820,076 - 151,830,359 (-)NCBICelera
Cytogenetic Map4q42NCBI
LOC100990924
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21015,912,201 - 16,018,948 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,908,958 - 15,916,988 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,469,351 - 10,576,060 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,736,949 - 10,745,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,720,723 - 10,744,046 (-)Ensemblpanpan1.1panPan2
LOC100523789
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1561,621,869 - 61,633,693 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2564,345,215 - 64,351,760 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KLRC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,286,280 - 10,294,853 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,286,787 - 10,293,585 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660892,363,181 - 2,372,502 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Klrc1
944 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:410
Count of miRNA genes:250
Interacting mature miRNAs:264
Transcripts:ENSMUST00000032270, ENSMUST00000032271, ENSMUST00000118447, ENSMUST00000169545
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
4141611Btts_mbitterness tasting (mouse)Not determined6125333609134096586Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
4141151Ath38_matherosclerosis 38 (mouse)Not determined128495857136293176Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
10412215Cmv3_mcytomegalovirus resistance 3 (mouse)Not determined6128811857137416927Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
10412134Cmv4_mcytomegalovirus resistance 4 (mouse)Not determined6127815180136022150Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
Klrc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6G1-2UniSTS
Cytogenetic Map6F3UniSTS
cM Map663.44UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001136068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001288664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC171002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF095447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF106008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF106009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF109784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000032270   ⟹   ENSMUSP00000032270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6129,642,978 - 129,655,936 (-)Ensembl
GRCm38.p6 Ensembl6129,666,015 - 129,678,973 (-)Ensembl
Ensembl Acc Id: ENSMUST00000032271   ⟹   ENSMUSP00000032271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6129,651,798 - 129,655,936 (-)Ensembl
GRCm38.p6 Ensembl6129,674,835 - 129,678,973 (-)Ensembl
Ensembl Acc Id: ENSMUST00000118447   ⟹   ENSMUSP00000114017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6129,651,822 - 129,655,873 (-)Ensembl
GRCm38.p6 Ensembl6129,674,859 - 129,678,910 (-)Ensembl
Ensembl Acc Id: ENSMUST00000169545   ⟹   ENSMUSP00000130762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6129,651,797 - 129,655,891 (-)Ensembl
GRCm38.p6 Ensembl6129,674,834 - 129,678,928 (-)Ensembl
RefSeq Acc Id: NM_001136068   ⟹   NP_001129540
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396129,642,978 - 129,655,936 (-)NCBI
GRCm386129,666,015 - 129,678,973 (-)NCBI
MGSCv376129,624,877 - 129,628,928 (-)RGD
Celera6131,386,423 - 131,390,570 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001288664   ⟹   NP_001275593
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396129,642,978 - 129,655,936 (-)NCBI
GRCm386129,666,015 - 129,678,973 (-)NCBI
Celera6131,386,423 - 131,390,570 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010652   ⟹   NP_034782
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396129,642,978 - 129,655,936 (-)NCBI
GRCm386129,666,015 - 129,678,973 (-)NCBI
MGSCv376129,624,877 - 129,628,928 (-)RGD
Celera6131,386,423 - 131,390,570 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011241236   ⟹   XP_011239538
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396129,642,978 - 129,659,815 (-)NCBI
GRCm386129,666,015 - 129,682,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241237   ⟹   XP_011239539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396129,642,978 - 129,659,815 (-)NCBI
GRCm386129,666,015 - 129,682,852 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321418   ⟹   XP_017176907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396129,642,978 - 129,659,815 (-)NCBI
GRCm386129,666,015 - 129,682,852 (-)NCBI
Sequence:
RefSeq Acc Id: NP_034782   ⟸   NM_010652
- Peptide Label: isoform 2
- UniProtKB: A6H5Z4 (UniProtKB/TrEMBL),   Q9WU32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001129540   ⟸   NM_001136068
- Peptide Label: isoform 1
- UniProtKB: A6H5Z4 (UniProtKB/TrEMBL),   Q9Z202 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275593   ⟸   NM_001288664
- Peptide Label: isoform 3
- UniProtKB: E9QAJ6 (UniProtKB/TrEMBL),   Q9WVJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239539   ⟸   XM_011241237
- Peptide Label: isoform X2
- UniProtKB: A6H5Z4 (UniProtKB/TrEMBL),   Q9WU32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011239538   ⟸   XM_011241236
- Peptide Label: isoform X1
- UniProtKB: A6H5Z4 (UniProtKB/TrEMBL),   Q9Z202 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017176907   ⟸   XM_017321418
- Peptide Label: isoform X3
- UniProtKB: Q9WVJ8 (UniProtKB/TrEMBL),   E9QAJ6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000032270   ⟸   ENSMUST00000032270
Ensembl Acc Id: ENSMUSP00000032271   ⟸   ENSMUST00000032271
Ensembl Acc Id: ENSMUSP00000114017   ⟸   ENSMUST00000118447
Ensembl Acc Id: ENSMUSP00000130762   ⟸   ENSMUST00000169545
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z202-F1-model_v2 AlphaFold Q9Z202 1-244 view protein structure

Promoters
RGD ID:6891224
Promoter ID:EPDNEW_M9063
Type:multiple initiation site
Name:Klrc1_1
Description:Mus musculus killer cell lectin-like receptor subfamily C, member1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386129,678,928 - 129,678,988EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1336161 AgrOrtholog
Ensembl Genes ENSMUSG00000030167 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032270 ENTREZGENE
  ENSMUST00000032270.13 UniProtKB/TrEMBL
  ENSMUST00000032271.13 UniProtKB/TrEMBL
  ENSMUST00000118447 ENTREZGENE
  ENSMUST00000118447.2 UniProtKB/TrEMBL
  ENSMUST00000169545 ENTREZGENE
  ENSMUST00000169545.8 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin UniProtKB/TrEMBL
  C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin_fold UniProtKB/TrEMBL
  NKG2/CD94_NK_receptors UniProtKB/TrEMBL
  NKR-like_CTLD UniProtKB/TrEMBL
KEGG Report mmu:16641 UniProtKB/TrEMBL
MGD MGI:1336161 ENTREZGENE
NCBI Gene 16641 ENTREZGENE
PANTHER C-TYPE LECTIN PROTEINS UniProtKB/TrEMBL
  NKG2-A/NKG2-B TYPE II INTEGRAL MEMBRANE PROTEIN UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Klrc1 PhenoGen
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type_lectin_fold UniProtKB/TrEMBL
UniProt A6H5Z4 ENTREZGENE, UniProtKB/TrEMBL
  E9QAJ6 ENTREZGENE, UniProtKB/TrEMBL
  Q9WU31_MOUSE UniProtKB/TrEMBL
  Q9WU32 ENTREZGENE, UniProtKB/TrEMBL
  Q9WVJ8 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z202 ENTREZGENE, UniProtKB/TrEMBL