ONTOLOGY REPORT - ANNOTATIONS
Term: hindbrain development
Accession: GO:0030902
browse the term
Definition: The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium).
Synonyms: exact_synonym: rhombencephalon development
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Ahi1
Abelson helper integration site 1
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
acts_upstream_of_or_within
ISO
MGI:2180721 (PMID:15872003)
RGD
PMID:15872003
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
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Bmp5
bone morphogenetic protein 5
involved_in
ISO
UniProtKB:P23359 (MGI:1332253|PMID:10079236)
RGD
PMID:10079236
MGI:1332253
NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925
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Bmp7
bone morphogenetic protein 7
involved_in
ISO
UniProtKB:P49003 (MGI:1332253|PMID:10079236)
RGD
PMID:10079236
MGI:1332253
NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
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Ctnnb1
catenin beta 1
involved_in
ISO IEA
(MGI:1931800|PMID:11262227) GO_REF:0000107
RGD Ensembl
PMID:11262227
GO_REF:0000107 MGI:1931800
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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En1
engrailed homeobox 1
acts_upstream_of_or_within
ISO
MGI:95390 (PMID:15607945)
RGD
PMID:15607945
NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943
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En2
engrailed homeobox 2
acts_upstream_of_or_within
ISO
MGI:95389 (PMID:15607945)
RGD
PMID:15607945
NCBI chr 4:7,221,096...7,226,943
Ensembl chr 4:7,221,096...7,226,943
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Gbx2
gastrulation brain homeobox 2
acts_upstream_of_or_within
ISO
MGI:1857634 (PMID:15829521), (PMID:16651541)
RGD
PMID:15829521 PMID:16651541
NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
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Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
MGI:1857164|MGI:1857509|MGI:98297 (PMID:15496441), (PMID:8575294)
RGD
PMID:8575294 PMID:15496441
NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
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Hnf1b
HNF1 homeobox B
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2176174|MGI:2670936 (PMID:15872003)
Ensembl RGD
PMID:15872003
GO_REF:0000107
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
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Hoxa1
homeobox A1
acts_upstream_of_or_within
ISO
MGI:3056069 (PMID:15367676)
RGD
PMID:15367676
NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
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Kdm2b
lysine demethylase 2B
involved_in
ISO
(MGI:4949568|PMID:21220025)
RGD
PMID:21220025
MGI:4949568
NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
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Neurod1
neuronal differentiation 1
acts_upstream_of_or_within
ISO
MGI:2148229 (PMID:16368089)
RGD
PMID:16368089
NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
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Neurog3
neurogenin 3
IEP
RGD
PMID:9130143
RGD:633362
NCBI chr20:30,079,780...30,081,262
Ensembl chr20:30,079,780...30,081,262
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Nfib
nuclear factor I/B
acts_upstream_of_or_within
ISO
MGI:3530139 (PMID:15632069)
RGD
PMID:15632069
NCBI chr 5:96,759,208...96,974,001
Ensembl chr 5:96,764,653...96,975,479
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Pax6
paired box 6
IDA IMP
RGD
PMID:11880342 PMID:20082710
RGD:729590 , RGD:8552345
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
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Ptf1a
pancreas associated transcription factor 1a
involved_in
ISS ISO
GO_REF:0000024 (MGI:1859633|PMID:11318877)
HGNC RGD
PMID:11318877
GO_REF:0000024 MGI:1859633
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
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Ptn
pleiotrophin
IEP
RGD
PMID:9749725
RGD:9831452
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
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Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1934268|MGI:2387802|MGI:95728 (PMID:15183722), (PMID:15496441)
UniProt RGD
PMID:15183722 PMID:15496441
GO_REF:0000024
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Smad1
SMAD family member 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2157982 (PMID:15899870)
Ensembl RGD
PMID:15899870
GO_REF:0000107
NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
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Smad9
SMAD family member 9
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3581766 (PMID:15899870)
Ensembl RGD
PMID:15899870
GO_REF:0000107
NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307
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Smarca4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
acts_upstream_of_or_within
ISO
MGI:2176173|MGI:3605892 (PMID:16330018)
RGD
PMID:16330018
NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
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Tbr1
T-box brain transcription factor 1
acts_upstream_of_or_within
ISO
MGI:2179766 (PMID:16540585)
RGD
PMID:16540585
NCBI chr 3:46,350,237...46,368,397
Ensembl chr 3:46,351,213...46,361,041
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Tgfb2
transforming growth factor, beta 2
IEP
RGD
PMID:11231055
RGD:2302116
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
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Wls
Wnt ligand secretion mediator
involved_in
ISO
(MGI:4834980|PMID:20614471)
RGD
PMID:20614471
MGI:4834980
NCBI chr 2:248,931,885...249,047,248
Ensembl chr 2:248,931,903...249,048,298
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Atf2
activating transcription factor 2
involved_in
IEA ISO
GO_REF:0000107 MGI:3720850 (PMID:21533046)
Ensembl RGD
PMID:21533046
GO_REF:0000107
NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
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Foxa2
forkhead box A2
acts_upstream_of_or_within
ISO
MGI:1347476|MGI:2176222|MGI:2177337 (PMID:17922007)
RGD
PMID:17922007
NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
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Gata2
GATA binding protein 2
acts_upstream_of_or_within
ISO
MGI:1857743 (PMID:10357893)
RGD
PMID:10357893
NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
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Nog
noggin
involved_in
ISO IEA
(PMID:8582276) GO_REF:0000107
RGD Ensembl
PMID:8582276
GO_REF:0000107
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
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Phox2b
paired-like homeobox 2b
acts_upstream_of_or_within
ISO
MGI:1926861 (PMID:17922007)
RGD
PMID:17922007
NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
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Nhlh2
nescient helix loop helix 2
acts_upstream_of_or_within
ISO
UniProtKB:Q02576 (MGI:3723363|PMID:17573818)
RGD
PMID:17573818
MGI:3723363
NCBI chr 2:189,444,287...189,449,625
Ensembl chr 2:189,442,711...189,449,625
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Pou4f1
POU class 4 homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3512302 (PMID:8955272)
Ensembl RGD
PMID:8955272
GO_REF:0000107
NCBI chr15:81,253,714...81,260,057
Ensembl chr15:81,257,781...81,259,728
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Sema4c
semaphorin 4C
involved_in
ISO
(MGI:4881530|PMID:21122816)
RGD
PMID:21122816
MGI:4881530
NCBI chr 9:38,791,668...38,802,171
Ensembl chr 9:38,791,670...38,802,128
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Shh
sonic hedgehog signaling molecule
acts_upstream_of_or_within
ISO
(PMID:10970885)
RGD
PMID:10970885
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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C5ar1
complement C5a receptor 1
IMP
RGD
PMID:18635264
RGD:5129699
NCBI chr 1:76,948,622...76,959,826
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Agtr2
angiotensin II receptor, type 2
IMP
RGD
PMID:19682991
RGD:6903898
NCBI chr X:112,119,876...112,124,060
Ensembl chr X:112,120,228...112,124,057
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Cdk5
cyclin-dependent kinase 5
acts_upstream_of_or_within
ISO
MGI:1861809 (PMID:8855328)
RGD
PMID:8855328
NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112
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Clp1
cleavage factor polyribonucleotide kinase subunit 1
involved_in
ISO ISS
(PMID:24766809), (PMID:24766810) (MGI:5568133|PMID:24766809) GO_REF:0000024
RGD UniProt
PMID:24766809 PMID:24766810
GO_REF:0000024 MGI:5568133
NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
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Dixdc1
DIX domain containing 1
IMP
RGD
PMID:19339625
RGD:2308917
NCBI chr 8:51,007,835...51,081,191
Ensembl chr 8:51,007,838...51,081,090
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Ezh2
enhancer of zeste 2 polycomb repressive complex 2 subunit
acts_upstream_of_or_within
ISO
MGI:2661097 (PMID:20798045)
RGD
PMID:20798045
NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
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Fktn
fukutin
acts_upstream_of_or_within
ISO
(PMID:29360985)
RGD
PMID:29360985
NCBI chr 5:68,339,803...68,396,412
Ensembl chr 5:68,340,028...68,396,409
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Kif14
kinesin family member 14
involved_in
ISO
(MGI:5485315|PMID:23308235)
RGD
PMID:23308235
MGI:5485315
NCBI chr13:47,926,975...47,990,598
Ensembl chr13:47,927,044...47,989,164
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Nav2
neuron navigator 2
involved_in
ISO
(MGI:5050602|PMID:21419114)
RGD
PMID:21419114
MGI:5050602
NCBI chr 1:98,957,629...99,322,339
Ensembl chr 1:98,663,759...99,322,337
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Neurod2
neuronal differentiation 2
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (MGI:3621523|PMID:16504944)
UniProt Ensembl RGD
PMID:16504944
GO_REF:0000024 GO_REF:0000107 MGI:3621523
NCBI chr10:83,323,801...83,327,986
Ensembl chr10:83,324,442...83,327,986
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Ogdh
oxoglutarate dehydrogenase
involved_in
ISO IEA
(MGI:3662936|PMID:16901643) GO_REF:0000107
RGD Ensembl
PMID:16901643
GO_REF:0000107 MGI:3662936
NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479
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Cdk5
cyclin-dependent kinase 5
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1861809 (PMID:10407039)
Ensembl RGD
PMID:10407039
GO_REF:0000107
NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112
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Map2k1
mitogen activated protein kinase kinase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:99511 (PMID:24431450)
Ensembl RGD
PMID:24431450
GO_REF:0000107
NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
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Ptpn11
protein tyrosine phosphatase, non-receptor type 11
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1346866|MGI:4868451 (PMID:24431450)
Ensembl RGD
PMID:24431450
GO_REF:0000107
NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925
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Comt
catechol-O-methyltransferase
acts_upstream_of_or_within
ISO
MGI:2178542 (PMID:28556830)
RGD
PMID:28556830
NCBI chr11:82,568,052...82,587,642
Ensembl chr11:82,568,025...82,587,642
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Gli1
GLI family zinc finger 1
acts_upstream_of_or_within
ISO
MGI:95728 (PMID:16571625)
RGD
PMID:16571625
NCBI chr 7:63,156,926...63,169,579
Ensembl chr 7:63,156,926...63,169,251
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Gli2
GLI family zinc finger 2
acts_upstream_of_or_within
ISO
MGI:2446434|MGI:3664541|MGI:95727 (PMID:16571625)
RGD
PMID:16571625
NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
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Nfix
nuclear factor I X
acts_upstream_of_or_within
ISO
MGI:3802571 (PMID:30503862)
RGD
PMID:30503862
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
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Pcnt
pericentrin
acts_upstream_of_or_within
ISO
MGI:3799303 (PMID:20096683)
RGD
PMID:20096683
NCBI chr20:12,190,597...12,278,723
Ensembl chr20:12,191,648...12,278,710
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Smo
smoothened, frizzled class receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2176173|MGI:2176256 (PMID:16571625)
Ensembl RGD
PMID:16571625
GO_REF:0000107
NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
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Trnp1
TMF1-regulated nuclear protein 1
involved_in
ISO
(MGI:5490679|PMID:23622239)
RGD
PMID:23622239
MGI:5490679
NCBI chr 5:145,706,427...145,713,279
Ensembl chr 5:145,706,094...145,713,272
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Tuba1a
tubulin, alpha 1A
involved_in
ISO
MGI:3617352 (PMID:17218254)
RGD
PMID:17218254
NCBI chr 7:130,113,214...130,116,880
Ensembl chr 7:130,081,032...130,196,186
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Usp9x
ubiquitin specific peptidase 9, X-linked
acts_upstream_of_or_within
ISO
MGI:5438072 (PMID:23861879)
RGD
PMID:23861879
NCBI chr X:9,588,825...9,726,993
Ensembl chr X:9,588,825...9,696,711
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Faim2
Fas apoptotic inhibitory molecule 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5295128|PMID:21957071)
UniProt RGD
PMID:21957071
GO_REF:0000024 MGI:5295128
NCBI chr 7:130,632,368...130,659,353
Ensembl chr 7:130,633,348...130,659,168
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Mdk
midkine
involved_in
ISO IEA
(MGI:2178952|PMID:10096022) GO_REF:0000107
RGD Ensembl
PMID:10096022
GO_REF:0000107 MGI:2178952
NCBI chr 3:77,901,134...77,903,997
Ensembl chr 3:77,901,158...77,903,130
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Ttbk2
tau tubulin kinase 2
involved_in
ISO
(MGI:5700621|PMID:26323690)
RGD
PMID:26323690
MGI:5700621
NCBI chr 3:107,691,123...107,802,911
Ensembl chr 3:107,697,340...107,803,223
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Cend1
cell cycle exit and neuronal differentiation 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:4831137 (PMID:20153830)
GO_Central RGD
PMID:20153830
GO_REF:0000033
NCBI chr 1:196,525,153...196,528,152
Ensembl chr 1:196,523,920...196,528,302
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Serpine2
serpin family E member 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2387774 (PMID:17409116)
Ensembl RGD
PMID:17409116
GO_REF:0000107
NCBI chr 9:81,124,746...81,188,866
Ensembl chr 9:81,124,804...81,188,826
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Kif14
kinesin family member 14
involved_in
ISO
(MGI:5485315|PMID:23308235)
RGD
PMID:23308235
MGI:5485315
NCBI chr13:47,926,975...47,990,598
Ensembl chr13:47,927,044...47,989,164
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Atp2b2
ATPase plasma membrane Ca2+ transporting 2
acts_upstream_of_or_within
ISO
MGI:1857876 (PMID:9668038)
RGD
PMID:9668038
NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
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Cbln1
cerebellin 1 precursor
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:Q61625 (MGI:4839424|PMID:20537373)
BHF-UCL RGD
PMID:20537373
GO_REF:0000024 MGI:4839424
NCBI chr19:19,608,763...19,612,572
Ensembl chr19:19,608,716...19,612,572
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Grid2
glutamate ionotropic receptor delta type subunit 2
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:Q9R171 (MGI:4839424|PMID:20537373)
BHF-UCL RGD
PMID:20537373
GO_REF:0000024 MGI:4839424
NCBI chr 4:92,415,019...93,892,472
Ensembl chr 4:92,415,230...93,889,355
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Kndc1
kinase non-catalytic C-lobe domain containing 1
acts_upstream_of_or_within
ISO
(PMID:17984326)
RGD
PMID:17984326
NCBI chr 1:194,689,962...194,738,353
Ensembl chr 1:194,690,135...194,738,362
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Mtpn
myotrophin
IEP
RGD
PMID:8144589
RGD:632797
NCBI chr 4:64,159,273...64,186,686
Ensembl chr 4:64,157,641...64,186,724
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Nfix
nuclear factor I X
involved_in acts_upstream_of_or_within
ISO
MGI:3802571 (PMID:23042739) MGI:3802571 (PMID:21800304)
RGD
PMID:21800304 PMID:23042739
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
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Nrxn1
neurexin 1
involved_in
ISS ISO
GO_REF:0000024 UniProtKB:Q61625|UniProtKB:Q9R171 (MGI:4839424|PMID:20537373)
BHF-UCL RGD
PMID:20537373
GO_REF:0000024 MGI:4839424
NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710
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Ophn1
oligophrenin 1
involved_in
ISO
(PMID:27160703)
RGD
PMID:27160703
NCBI chr X:63,599,746...63,976,678
Ensembl chr X:63,603,042...63,976,633
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Prox1
prospero homeobox 1
involved_in
ISO
(MGI:4849596|PMID:20808958)
RGD
PMID:20808958
MGI:4849596
NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
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Top2a
DNA topoisomerase II alpha
IEP
RGD
PMID:11170002
RGD:8693630
NCBI chr10:83,945,731...83,976,874
Ensembl chr10:83,945,735...83,976,874
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Ulk1
unc-51 like autophagy activating kinase 1
acts_upstream_of_or_within
ISO
(PMID:10624947)
RGD
PMID:10624947
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
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Wnt7a
Wnt family member 7A
acts_upstream_of_or_within
ISO
(PMID:9405095)
RGD
PMID:9405095
NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
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Atf5
activating transcription factor 5
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:5689090|PMID:22095825) GO_REF:0000024
Ensembl RGD UniProt
PMID:22095825
GO_REF:0000024 GO_REF:0000107 MGI:5689090
NCBI chr 1:95,295,602...95,299,755
Ensembl chr 1:95,295,610...95,299,707
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Egf
epidermal growth factor
acts_upstream_of
ISO
(PMID:10027293)
RGD
PMID:10027293
NCBI chr 2:218,219,408...218,302,359
Ensembl chr 2:218,219,415...218,302,064
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Fgf2
fibroblast growth factor 2
acts_upstream_of
ISO
(PMID:10027293)
RGD
PMID:10027293
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Gbx2
gastrulation brain homeobox 2
acts_upstream_of_or_within
ISO
MGI:1857634 (PMID:16651541)
RGD
PMID:16651541
NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
G
Igf1
insulin-like growth factor 1
acts_upstream_of
ISO
(PMID:10027293)
RGD
PMID:10027293
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
G
Psmg1
proteasome assembly chaperone 1
acts_upstream_of_or_within
ISO
MGI:4820730 (PMID:20498273)
RGD
PMID:20498273
NCBI chr11:35,276,080...35,285,541
Ensembl chr11:35,276,011...35,285,622
G
Rere
arginine-glutamic acid dipeptide repeats
acts_upstream_of_or_within
ISO
MGI:3577419 (PMID:24466353)
RGD
PMID:24466353
NCBI chr 5:160,765,855...161,097,678
Ensembl chr 5:160,765,934...161,097,677
G
Rora
RAR-related orphan receptor A
involved_in
ISO
UniProtKB:Q62226 (MGI:2683830|PMID:14687547)
RGD
PMID:14687547
MGI:2683830
NCBI chr 8:69,301,635...70,034,741
Ensembl chr 8:69,301,733...70,025,931
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of
ISS ISO IEA
GO_REF:0000024 (PMID:10027293) UniProtKB:P51448 (MGI:2683830|PMID:14687547), (MGI:5689090|PMID:22095825) GO_REF:0000107
UniProt RGD Ensembl
PMID:10027293 PMID:14687547 PMID:22095825
GO_REF:0000024 GO_REF:0000107 MGI:2683830 MGI:5689090
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Zfp423
zinc finger protein 423
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:27727273)
Ensembl RGD
PMID:27727273
GO_REF:0000107
NCBI chr19:19,111,213...19,407,373
Ensembl chr19:19,110,238...19,407,373
G
Plxna2
plexin A2
acts_upstream_of_or_within
ISO
MGI:3793763|MGI:3793765 (PMID:18327254)
RGD
PMID:18327254
NCBI chr13:106,163,103...106,358,979
Ensembl chr13:106,163,103...106,358,979
G
Ttbk2
tau tubulin kinase 2
involved_in
ISO
(MGI:5700621|PMID:26323690)
RGD
PMID:26323690
MGI:5700621
NCBI chr 3:107,691,123...107,802,911
Ensembl chr 3:107,697,340...107,803,223
G
Cacna1a
calcium voltage-gated channel subunit alpha1 A
acts_upstream_of_or_within
ISO
MGI:1856209|MGI:1856210 (PMID:7697385)
RGD
PMID:7697385
NCBI chr19:23,520,741...23,819,971
Ensembl chr19:23,520,741...23,823,225
G
Dll1
delta like canonical Notch ligand 1
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:5504540|PMID:23688253) GO_REF:0000024
Ensembl RGD UniProt
PMID:23688253
GO_REF:0000024 GO_REF:0000107 MGI:5504540
NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
G
Zfp365
zinc finger protein 365
involved_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (MGI:5559035|PMID:23912123)
UniProt Ensembl RGD
PMID:23912123
GO_REF:0000024 GO_REF:0000107 MGI:5559035
NCBI chr20:20,666,240...20,689,734
Ensembl chr20:20,666,240...20,691,238
G
Crk
CRK proto-oncogene, adaptor protein
acts_upstream_of_or_within
ISO
MGI:104686 (PMID:19074029)
RGD
PMID:19074029
NCBI chr10:60,530,469...60,556,703
Ensembl chr10:60,530,464...60,553,406
G
Crkl
CRK like proto-oncogene, adaptor protein
acts_upstream_of_or_within
ISO
MGI:88508 (PMID:19074029)
RGD
PMID:19074029
NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238
G
L1cam
L1 cell adhesion molecule
IMP
RGD
PMID:27027721
RGD:401959323
NCBI chr X:151,597,270...151,623,776
Ensembl chr X:151,597,277...151,623,857
G
Nanos1
nanos C2HC-type zinc finger 1
acts_upstream_of_or_within
ISO
(PMID:26609159)
RGD
PMID:26609159
NCBI chr 1:259,897,663...259,901,561
Ensembl chr 1:259,897,939...259,898,730
G
Samd4b
sterile alpha motif domain containing 4B
acts_upstream_of_or_within
ISO
(PMID:26609159)
RGD
PMID:26609159
NCBI chr 1:83,689,413...83,728,652
Ensembl chr 1:83,689,413...83,713,853
G
Agtpbp1
ATP/GTP binding carboxypeptidase 1
involved_in acts_upstream_of_or_within
ISO
(MGI:2159417|PMID:11884758), (MGI:3614720|PMID:16465590), (MGI:4849873|PMID:21074048) MGI:1856535|MGI:1857523|MGI:2443047|MGI:6270378 (PMID:10630211), (PMID:30420556)
RGD
PMID:10630211 PMID:11884758 PMID:16465590 PMID:21074048 PMID:30420556
MGI:2159417 MGI:3614720 MGI:4849873
NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
G
Atp2b2
ATPase plasma membrane Ca2+ transporting 2
acts_upstream_of_or_within
ISO
MGI:1857876 (PMID:9668038)
RGD
PMID:9668038
NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
G
Atp7a
ATPase copper transporting alpha
acts_upstream_of_or_within
ISO
MGI:1856466 (PMID:2473662)
RGD
PMID:2473662
NCBI chr X:71,094,144...71,201,550
Ensembl chr X:71,094,202...71,198,354
G
Atxn2
ataxin 2
acts_upstream_of_or_within
ISO
MGI:3505741 (PMID:10973246)
RGD
PMID:10973246
NCBI chr12:34,754,132...34,851,175
Ensembl chr12:34,754,137...34,851,479
G
Cacna1a
calcium voltage-gated channel subunit alpha1 A
acts_upstream_of_or_within
ISO
MGI:1856209|MGI:1856210 (PMID:10630211), (PMID:1306163), (PMID:7834360)
RGD
PMID:1306163 PMID:7834360 PMID:10630211
NCBI chr19:23,520,741...23,819,971
Ensembl chr19:23,520,741...23,823,225
G
Cend1
cell cycle exit and neuronal differentiation 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:4831137 (PMID:20153830)
GO_Central RGD
PMID:20153830
GO_REF:0000033
NCBI chr 1:196,525,153...196,528,152
Ensembl chr 1:196,523,920...196,528,302
G
Faim2
Fas apoptotic inhibitory molecule 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5295128|PMID:21957071)
UniProt RGD
PMID:21957071
GO_REF:0000024 MGI:5295128
NCBI chr 7:130,632,368...130,659,353
Ensembl chr 7:130,633,348...130,659,168
G
Foxp2
forkhead box P2
involved_in
ISO
MGI:3778383 (PMID:22133810)
RGD
PMID:22133810
NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
G
Herc1
HECT and RLD domain containing E3 ubiquitin protein ligase family member 1
acts_upstream_of_or_within
ISO
MGI:3613033 (PMID:20041218)
RGD
PMID:20041218
NCBI chr 8:66,857,169...67,070,318
Ensembl chr 8:66,856,935...67,070,312
G
Ldb1
LIM domain binding 1
acts_upstream_of_or_within
ISO
MGI:3719683 (PMID:17664423)
RGD
PMID:17664423
NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
G
Lhx1
LIM homeobox 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:107792 (PMID:17664423)
UniProt RGD
PMID:17664423
GO_REF:0000024
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
G
Lhx5
LIM homeobox 5
acts_upstream_of_or_within
ISO
MGI:99783 (PMID:17664423)
RGD
PMID:17664423
NCBI chr12:36,126,186...36,134,625
Ensembl chr12:36,126,186...36,134,625
G
Psap
prosaposin
acts_upstream_of_or_within
ISO
MGI:3521746 (PMID:15345707)
RGD
PMID:15345707
NCBI chr20:28,214,229...28,240,501
Ensembl chr20:28,214,271...28,240,498
G
Rora
RAR-related orphan receptor A
acts_upstream_of_or_within
ISO
MGI:1857035 (PMID:8996814)
RGD
PMID:8996814
NCBI chr 8:69,301,635...70,034,741
Ensembl chr 8:69,301,733...70,025,931
G
Skor2
SKI family transcriptional corepressor 2
acts_upstream_of_or_within
ISO
MGI:5300464 (PMID:21937600), (PMID:24491816)
RGD
PMID:21937600 PMID:24491816
NCBI chr18:70,404,431...70,446,330
Ensembl chr18:70,404,489...70,440,342
G
Slc25a46
solute carrier family 25, member 46
acts_upstream_of_or_within
ISO
MGI:6358090 (PMID:28934388)
RGD
PMID:28934388
NCBI chr18:23,215,954...23,244,917
Ensembl chr18:23,215,962...23,244,314
G
Top2a
DNA topoisomerase II alpha
IEP
RGD
PMID:11170002
RGD:8693630
NCBI chr10:83,945,731...83,976,874
Ensembl chr10:83,945,735...83,976,874
G
Ttc21b
tetratricopeptide repeat domain 21B
acts_upstream_of_or_within
ISO
MGI:2137515|MGI:2152544|MGI:2179048|MGI:5587034 (PMID:29615573)
RGD
PMID:29615573
NCBI chr 3:50,861,367...50,935,880
Ensembl chr 3:50,861,367...50,935,903
G
Ttll1
TTL family tubulin polyglutamylase complex subunit L1
acts_upstream_of_or_within
ISO
MGI:1918244 (PMID:30420556)
RGD
PMID:30420556
NCBI chr 7:114,619,509...114,648,850
Ensembl chr 7:114,619,508...114,648,761
G
Aars1
alanyl-tRNA synthetase 1
acts_upstream_of_or_within
ISO
MGI:3618596 (PMID:16906134)
RGD
PMID:16906134
NCBI chr19:38,999,130...39,021,152
Ensembl chr19:38,999,163...39,021,147
G
Agtpbp1
ATP/GTP binding carboxypeptidase 1
acts_upstream_of_or_within
ISO
(PMID:21052544)
RGD
PMID:21052544
NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
G
Atg7
autophagy related 7
acts_upstream_of_or_within
ISO
MGI:2386545|MGI:3587769 (PMID:16625205), (PMID:20577052)
RGD
PMID:16625205 PMID:20577052
NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
G
B4galt2
beta-1,4-galactosyltransferase 2
acts_upstream_of_or_within
ISO
MGI:3849305 (PMID:19265195)
RGD
PMID:19265195
NCBI chr 5:131,412,541...131,422,573
Ensembl chr 5:131,412,541...131,421,013
G
Cacna1a
calcium voltage-gated channel subunit alpha1 A
acts_upstream_of_or_within
ISO
MGI:1856209|MGI:1856210 (PMID:1306163)
RGD
PMID:1306163
NCBI chr19:23,520,741...23,819,971
Ensembl chr19:23,520,741...23,823,225
G
Faim2
Fas apoptotic inhibitory molecule 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5295128|PMID:21957071)
UniProt RGD
PMID:21957071
GO_REF:0000024 MGI:5295128
NCBI chr 7:130,632,368...130,659,353
Ensembl chr 7:130,633,348...130,659,168
G
Hspa5
heat shock protein family A (Hsp70) member 5
involved_in
ISO IEA
(MGI:4437543|PMID:19816510) GO_REF:0000107
RGD Ensembl
PMID:19816510
GO_REF:0000107 MGI:4437543
NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
G
Klhl1
kelch-like family member 1
acts_upstream_of_or_within
ISO
MGI:3664534|MGI:3664543 (PMID:17005861)
RGD
PMID:17005861
NCBI chr15:72,698,191...73,142,726
Ensembl chr15:72,699,094...73,142,594
G
Myh10
myosin heavy chain 10
acts_upstream_of_or_within
ISO
MGI:3664765 (PMID:16481398)
RGD
PMID:16481398
NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165
G
Naglu
N-acetyl-alpha-glucosaminidase
acts_upstream_of_or_within
ISO
MGI:1934018 (PMID:17712420)
RGD
PMID:17712420
NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
G
Nfix
nuclear factor I X
acts_upstream_of_or_within
ISO
MGI:3802571 (PMID:21800304)
RGD
PMID:21800304
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
G
Sez6
seizure related 6 homolog
acts_upstream_of_or_within
ISO
MGI:1935121|MGI:2385295 (PMID:16814779)
RGD
PMID:16814779
NCBI chr10:62,818,931...62,868,686
Ensembl chr10:62,819,069...62,868,671
G
Sez6l
seizure related 6 homolog like
acts_upstream_of_or_within
ISO
MGI:104745|MGI:2385295 (PMID:16814779)
RGD
PMID:16814779
NCBI chr12:44,064,901...44,221,814
Ensembl chr12:44,064,935...44,219,663
G
Sez6l2
seizure related 6 homolog like 2
acts_upstream_of_or_within
ISO
MGI:104745|MGI:1935121 (PMID:16814779)
RGD
PMID:16814779
NCBI chr 1:181,557,109...181,577,456
Ensembl chr 1:181,557,109...181,577,456
G
Uqcrq
ubiquinol-cytochrome c reductase, complex III subunit VII
involved_in
ISO
(MGI:3662936|PMID:16901643)
RGD
PMID:16901643
MGI:3662936
NCBI chr10:37,585,864...37,589,328
Ensembl chr10:37,586,888...37,589,169
G
Gba1
glucosylceramidase beta 1
acts_upstream_of_or_within
ISO
(PMID:17954912)
RGD
PMID:17954912
NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263
G
Whrn
whirlin
involved_in
IEA ISO
GO_REF:0000107 (MGI:5516521|PMID:24011083)
Ensembl RGD
PMID:24011083
GO_REF:0000107 MGI:5516521
NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
G
Arcn1
archain 1
acts_upstream_of_or_within
ISO
MGI:2671790 (PMID:20502676)
RGD
PMID:20502676
NCBI chr 8:45,057,617...45,082,224
Ensembl chr 8:45,057,619...45,082,247
G
Rere
arginine-glutamic acid dipeptide repeats
acts_upstream_of_or_within
ISO
MGI:3577419 (PMID:24466353)
RGD
PMID:24466353
NCBI chr 5:160,765,855...161,097,678
Ensembl chr 5:160,765,934...161,097,677
G
Atp2b2
ATPase plasma membrane Ca2+ transporting 2
acts_upstream_of_or_within
ISO
MGI:1857876 (PMID:17409239)
RGD
PMID:17409239
NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
G
Cntnap2
contactin associated protein 2
involved_in
ISO
(PMID:32675284)
RGD
PMID:32675284
NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
G
Coq8b
coenzyme Q8B
involved_in
ISS ISO
GO_REF:0000024 (PMID:27499294)
UniProt RGD
PMID:27499294
GO_REF:0000024
NCBI chr 1:82,525,578...82,549,182
Ensembl chr 1:82,526,568...82,549,180
G
Sptbn2
spectrin, beta, non-erythrocytic 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4127354 (PMID:20231455)
Ensembl RGD
PMID:20231455
GO_REF:0000107
NCBI chr 1:202,002,970...202,045,343
Ensembl chr 1:202,002,970...202,044,283
G
Dll1
delta like canonical Notch ligand 1
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:5504540|PMID:23688253) GO_REF:0000024
Ensembl RGD UniProt
PMID:23688253
GO_REF:0000024 GO_REF:0000107 MGI:5504540
NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
G
Kif14
kinesin family member 14
involved_in
ISO
(MGI:5485315|PMID:23308235)
RGD
PMID:23308235
MGI:5485315
NCBI chr13:47,926,975...47,990,598
Ensembl chr13:47,927,044...47,989,164
G
Lhx1
LIM homeobox 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:107792 (PMID:17664423)
UniProt RGD
PMID:17664423
GO_REF:0000024
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
G
Lhx5
LIM homeobox 5
acts_upstream_of_or_within
ISO
MGI:99783 (PMID:17664423)
RGD
PMID:17664423
NCBI chr12:36,126,186...36,134,625
Ensembl chr12:36,126,186...36,134,625
G
Abat
4-aminobutyrate aminotransferase
IEP
RGD
PMID:7182074
RGD:10047093
NCBI chr10:6,996,688...7,092,835
Ensembl chr10:6,999,819...7,092,835
G
Acvr1c
activin A receptor type 1C
IEP
RGD
PMID:8940033
RGD:631880
NCBI chr 3:42,815,490...42,892,423
Ensembl chr 3:42,822,610...42,892,327
G
Agtpbp1
ATP/GTP binding carboxypeptidase 1
acts_upstream_of_or_within
ISO
MGI:1856535 (PMID:7891151)
RGD
PMID:7891151
NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
G
Aif1
allograft inflammatory factor 1
IEP
RGD
PMID:9698327
RGD:704401
NCBI chr20:3,646,784...3,652,670
Ensembl chr20:3,646,777...3,652,668
G
Ak1
adenylate kinase 1
IEP
RGD
PMID:9920788
RGD:632499
NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041
G
Ak3
adenylate kinase 3
IEP
RGD
PMID:9920788
RGD:632499
NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625
G
Amigo2
adhesion molecule with Ig like domain 2
IEP
RGD
PMID:12843293
RGD:1299593
NCBI chr 7:128,391,493...128,394,589
Ensembl chr 7:128,390,412...128,394,695
G
Arhgap32
Rho GTPase activating protein 32
IEP
RGD
PMID:23226367
RGD:151665335
NCBI chr 8:30,421,269...30,681,653
Ensembl chr 8:30,421,515...30,678,454
G
Atic
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase
IEP
RGD
PMID:7057182
RGD:2301991
NCBI chr 9:73,164,846...73,184,897
Ensembl chr 9:73,164,846...73,184,889
G
Atp2b2
ATPase plasma membrane Ca2+ transporting 2
acts_upstream_of_or_within
ISO
MGI:3664103 (PMID:16880690)
RGD
PMID:16880690
NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
G
Atrn
attractin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856082 (PMID:18064672)
Ensembl RGD
PMID:18064672
GO_REF:0000107
NCBI chr 3:118,110,320...118,244,326
Ensembl chr 3:118,110,229...118,244,322
G
Ccr1
C-C motif chemokine receptor 1
IEP
RGD
PMID:12541321
RGD:5688179
NCBI chr 8:123,556,286...123,561,841
G
Cd3e
CD3 epsilon subunit of T-cell receptor complex
involved_in
ISO
(MGI:3718938|PMID:17502348)
RGD
PMID:17502348
MGI:3718938
NCBI chr 8:45,303,848...45,315,005
Ensembl chr 8:45,303,852...45,315,022
G
Cdk5
cyclin-dependent kinase 5
acts_upstream_of_or_within
ISO
MGI:1861809 (PMID:11226314)
RGD
PMID:11226314
NCBI chr 4:10,754,682...10,760,110
Ensembl chr 4:10,754,687...10,760,112
G
Cdk5r1
cyclin-dependent kinase 5 regulatory subunit 1
acts_upstream_of_or_within
ISO
MGI:1330828|MGI:2680652 (PMID:11226314), (PMID:11517264)
RGD
PMID:11226314 PMID:11517264
NCBI chr10:65,484,266...65,485,467
Ensembl chr10:65,483,941...65,488,456
G
Cdk5r2
cyclin-dependent kinase 5 regulatory subunit 2
acts_upstream_of_or_within
ISO
MGI:101764 (PMID:11517264)
RGD
PMID:11517264
NCBI chr 9:76,416,251...76,417,719
Ensembl chr 9:76,416,062...76,418,344
G
Cdkn2a
cyclin-dependent kinase inhibitor 2A
IEP
RGD
PMID:9693786
RGD:8552681
NCBI chr 5:103,984,949...103,992,143
Ensembl chr 5:103,984,949...104,003,149
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Ckb
creatine kinase B
IEP
RGD
PMID:12093362
RGD:625711
NCBI chr 6:130,729,420...130,732,301
Ensembl chr 6:130,729,423...130,732,315
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Ckmt1
creatine kinase, mitochondrial 1
IEP
RGD
PMID:12093362
RGD:625711
NCBI chr 3:108,329,859...108,335,760
Ensembl chr 3:108,330,705...108,335,758
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Cntn1
contactin 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3043422 (PMID:18354028)
Ensembl RGD
PMID:18354028
GO_REF:0000107
NCBI chr 7:123,263,146...123,560,896
Ensembl chr 7:123,372,792...123,558,541
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Cntnap2
contactin associated protein 2
involved_in
ISO
(PMID:32675284)
RGD
PMID:32675284
NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
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Cplane1
ciliogenesis and planar polarity effector complex subunit 1
acts_upstream_of_or_within
ISO
MGI:5297398 (PMID:25877302)
RGD
PMID:25877302
NCBI chr 2:57,269,195...57,369,580
Ensembl chr 2:57,268,884...57,369,500
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Crhr2
corticotropin releasing hormone receptor 2
IEP
RGD
PMID:16820012
RGD:5131267
NCBI chr 4:84,222,897...84,265,924
Ensembl chr 4:84,224,002...84,265,904
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Cyp11a1
cytochrome P450, family 11, subfamily a, polypeptide 1
IEP
RGD
PMID:16329132
RGD:1599699
NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338
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En1
engrailed homeobox 1
involved_in
ISO
UniProtKB:P04426 (MGI:82938|PMID:8848044)
RGD
PMID:8848044
MGI:82938
NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943
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Enpp1
ectonucleotide pyrophosphatase/phosphodiesterase 1
IEP
RGD
PMID:18565716
RGD:13204724
NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
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Esr2
estrogen receptor 2
IEP
RGD
PMID:16542644
RGD:1601098
NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919
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Faim2
Fas apoptotic inhibitory molecule 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5295128|PMID:21957071)
UniProt RGD
PMID:21957071
GO_REF:0000024 MGI:5295128
NCBI chr 7:130,632,368...130,659,353
Ensembl chr 7:130,633,348...130,659,168
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Fcgr2b
Fc gamma receptor 2B
involved_in
ISO
(MGI:3718938|PMID:17502348)
RGD
PMID:17502348
MGI:3718938
NCBI chr13:83,191,253...83,207,778
Ensembl chr13:83,193,163...83,207,778
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Foxc1
forkhead box C1
involved_in
ISO
(MGI:4359553|PMID:19668217)
RGD
PMID:19668217
MGI:4359553
NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
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Foxp2
forkhead box P2
acts_upstream_of_or_within
ISO
MGI:3584266|MGI:3723630 (PMID:15983371), (PMID:17619227)
RGD
PMID:15983371 PMID:17619227
NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
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Gabrb3
gamma-aminobutyric acid type A receptor subunit beta 3
acts_upstream_of_or_within
ISO
(PMID:17983671)
RGD
PMID:17983671
NCBI chr 1:108,467,047...108,702,522
Ensembl chr 1:108,296,124...108,698,961
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Gart
phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
IEP
RGD
PMID:7057182
RGD:2301991
NCBI chr11:30,864,896...30,891,125
Ensembl chr11:30,865,889...30,891,125
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Gbx2
gastrulation brain homeobox 2
acts_upstream_of_or_within
ISO
MGI:1857634 (PMID:16651541)
RGD
PMID:16651541
NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
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Gdf10
growth differentiation factor 10
IEP
RGD
PMID:8605043
RGD:631791
NCBI chr16:9,237,182...9,250,537
Ensembl chr16:9,237,261...9,249,343
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Glud1
glutamate dehydrogenase 1
IEP
RGD
PMID:7182074
RGD:10047093
NCBI chr16:9,640,312...9,673,961
Ensembl chr16:9,640,312...9,673,957
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Gpx4
glutathione peroxidase 4
acts_upstream_of_or_within
ISO
(PMID:24599700)
RGD
PMID:24599700
NCBI chr 7:9,650,186...9,652,982
Ensembl chr 7:9,650,185...9,652,982
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Hap1
huntingtin-associated protein 1
involved_in
IEA ISO
GO_REF:0000107 (MGI:3814764|PMID:18636121)
Ensembl RGD
PMID:18636121
GO_REF:0000107 MGI:3814764
NCBI chr10:85,277,890...85,286,126
Ensembl chr10:85,277,890...85,286,126
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Hnrnpd
heterogeneous nuclear ribonucleoprotein D
IEP
RGD
PMID:19115409
RGD:10041070
NCBI chr14:9,615,375...9,638,975
Ensembl chr14:9,615,479...9,633,786
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Hnrnpk
heterogeneous nuclear ribonucleoprotein K
IEP
RGD
PMID:22102872
RGD:10002783
NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
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Hspa8
heat shock protein family A (Hsp70) member 8
IEP
RGD
PMID:9764759
RGD:10059383
NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259
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Igf1r
insulin-like growth factor 1 receptor
IEP IMP
RGD
PMID:23397157 PMID:21443795
RGD:10403039 , RGD:12904969
NCBI chr 1:121,549,831...121,838,548
Ensembl chr 1:121,550,743...121,831,777
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Insr
insulin receptor
IEP
RGD
PMID:23397157
RGD:10403039
NCBI chr12:1,193,193...1,330,976
Ensembl chr12:1,197,100...1,330,883
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Kcnc1
potassium voltage-gated channel subfamily C member 1
IEP
RGD
PMID:9526005
RGD:9685724
NCBI chr 1:96,902,953...96,944,744
Ensembl chr 1:96,902,953...96,944,744
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Ldb1
LIM domain binding 1
acts_upstream_of_or_within
ISO
MGI:3719683 (PMID:17664423)
RGD
PMID:17664423
NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
G
Lhx1
LIM homeobox 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:107792 (PMID:17664423)
UniProt RGD
PMID:17664423
GO_REF:0000024
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
G
Lhx5
LIM homeobox 5
acts_upstream_of_or_within
ISO
MGI:99783 (PMID:17664423)
RGD
PMID:17664423
NCBI chr12:36,126,186...36,134,625
Ensembl chr12:36,126,186...36,134,625
G
Lmx1a
LIM homeobox transcription factor 1 alpha
acts_upstream_of_or_within
ISO
MGI:1888413 (PMID:1638738)
RGD
PMID:1638738
NCBI chr13:79,834,614...79,978,253
Ensembl chr13:79,835,019...79,978,253
G
Lpar1
lysophosphatidic acid receptor 1
IEP
RGD
PMID:9753172
RGD:2317716
NCBI chr 5:73,229,047...73,347,874
Ensembl chr 5:73,229,625...73,369,895
G
Mecp2
methyl CpG binding protein 2
acts_upstream_of_or_within
IEP ISO
MGI:2158354 (PMID:18571096)
RGD
PMID:18571096 PMID:14751287
RGD:12743658
NCBI chr X:151,781,177...151,844,687
Ensembl chr X:151,789,930...151,844,689
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Mt-co1
mitochondrially encoded cytochrome c oxidase I
IEP
RGD
PMID:2465379
RGD:2302317
NCBI chr MT:5,323...6,867 NCBI chr MT:5,323...6,867 NCBI chr MT:5,323...6,867 NCBI chr MT:5,323...6,867
Ensembl chr MT:5,323...6,867
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Mt-nd4
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4
IEP
RGD
PMID:2465379
RGD:2302317
NCBI chr MT:10,160...11,537 NCBI chr MT:10,160...11,537 NCBI chr MT:10,160...11,537 NCBI chr MT:10,160...11,537 NCBI chr MT:10,160...11,537
Ensembl chr MT:10,160...11,537
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Myo16
myosin XVI
involved_in
IEP
PMID:11588169
HGNC-UCL
PMID:11588169
RGD:633234
NCBI chr16:78,884,405...79,364,445
Ensembl chr16:78,884,406...79,248,388
G
Ncoa1
nuclear receptor coactivator 1
IEP
RGD
PMID:10803578 PMID:15876152
RGD:2293531 , RGD:5688232
NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664
G
Ncoa2
nuclear receptor coactivator 2
IEP
RGD
PMID:10803578
RGD:2293531
NCBI chr 5:5,835,642...6,069,693
Ensembl chr 5:5,835,706...6,067,451
G
Ncoa3
nuclear receptor coactivator 3
IEP
RGD
PMID:10803578
RGD:2293531
NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594
G
Ncor1
nuclear receptor co-repressor 1
IEP
RGD
PMID:10803578
RGD:2293531
NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032
G
Ncor2
nuclear receptor co-repressor 2
IEP
RGD
PMID:10803578
RGD:2293531
NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319
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Ncstn
nicastrin
IEP
RGD
PMID:16298244
RGD:13801190
NCBI chr13:84,530,442...84,546,454
Ensembl chr13:84,530,440...84,546,454
G
Neurod1
neuronal differentiation 1
involved_in
IEP ISO
(MGI:2159022|PMID:10398678)
RGD
PMID:10398678 PMID:12242038
MGI:2159022 , RGD:1625048
NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
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Nfix
nuclear factor I X
acts_upstream_of_or_within
ISO
MGI:3802571 (PMID:21800304)
RGD
PMID:21800304
NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
G
Nr2c2
nuclear receptor subfamily 2, group C, member 2
involved_in
ISO
(MGI:5285161|PMID:20393820)
RGD
PMID:20393820
MGI:5285161
NCBI chr 4:124,610,216...124,666,813
Ensembl chr 4:124,608,960...124,661,902
G
Ntm
neurotrimin
IEP
RGD
PMID:12373100
RGD:2314481
NCBI chr 8:27,376,582...28,366,604
Ensembl chr 8:27,377,773...28,366,595
G
Pak1
p21 (RAC1) activated kinase 1
IEP
RGD
PMID:20395366
RGD:11533946
NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383
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Pax6
paired box 6
IEP
RGD
PMID:11688562
RGD:8552644
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
G
Pdss2
decaprenyl diphosphate synthase subunit 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5304241|PMID:21871565)
UniProt RGD
PMID:21871565
GO_REF:0000024 MGI:5304241
NCBI chr20:46,709,631...46,938,704
Ensembl chr20:46,709,649...46,938,708
G
Pfdn1
prefoldin subunit 1
acts_upstream_of_or_within
ISO
MGI:3800373 (PMID:18566413)
RGD
PMID:18566413
NCBI chr18:28,014,145...28,067,148
Ensembl chr18:28,014,145...28,067,064
G
Pianp
PILR alpha associated neural protein
acts_upstream_of_or_within
ISO
(PMID:31511635)
RGD
PMID:31511635
NCBI chr 4:157,796,425...157,804,842
Ensembl chr 4:157,798,808...157,804,842
G
Ppargc1a
PPARG coactivator 1 alpha
IEP
RGD
PMID:17335037
RGD:10059646
NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656
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Prkg1
protein kinase cGMP-dependent 1
IEP
RGD
PMID:15763176
RGD:7777107
NCBI chr 1:228,409,605...229,638,794
Ensembl chr 1:228,408,947...229,639,080
G
Psen1
presenilin 1
IEP
RGD
PMID:16298244
RGD:13801190
NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650
G
Ptbp2
polypyrimidine tract binding protein 2
IEP
RGD
PMID:9917071
RGD:10045971
NCBI chr 2:207,812,659...207,874,019
Ensembl chr 2:207,812,920...207,873,506
G
Ptf1a
pancreas associated transcription factor 1a
involved_in
ISS ISO
GO_REF:0000024 (MGI:3703683|PMID:15543146) (PMID:15543146)
UniProt RGD
PMID:15543146
GO_REF:0000024 MGI:3703683
NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
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Ptn
pleiotrophin
IEP
RGD
PMID:8653419
RGD:10043831
NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
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Ptprs
protein tyrosine phosphatase, receptor type, S
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2158734 (PMID:15842738)
Ensembl RGD
PMID:15842738
GO_REF:0000107
NCBI chr 9:1,245,408...1,307,015
Ensembl chr 9:1,245,410...1,306,947
G
Rere
arginine-glutamic acid dipeptide repeats
acts_upstream_of_or_within
ISO
MGI:3577419 (PMID:24466353)
RGD
PMID:24466353
NCBI chr 5:160,765,855...161,097,678
Ensembl chr 5:160,765,934...161,097,677
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Rpgrip1l
Rpgrip1-like
acts_upstream_of_or_within
ISO
MGI:3716208 (PMID:17558409)
RGD
PMID:17558409
NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
G
Scn5a
sodium voltage-gated channel alpha subunit 5
IEP
RGD
PMID:22331407
RGD:6484221
NCBI chr 8:119,220,905...119,318,816
Ensembl chr 8:119,220,905...119,318,769
G
Sdf4
stromal cell derived factor 4
involved_in
IEP
PMID:18355758
BHF-UCL
PMID:18355758
RGD:8554427
NCBI chr 5:166,586,581...166,606,661
Ensembl chr 5:166,586,390...166,604,521
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Sema4c
semaphorin 4C
involved_in
ISO
(MGI:4881530|PMID:21122816)
RGD
PMID:21122816
MGI:4881530
NCBI chr 9:38,791,668...38,802,171
Ensembl chr 9:38,791,670...38,802,128
G
Sstr1
somatostatin receptor 1
IEP
RGD
PMID:9166718
RGD:2325007
NCBI chr 6:75,832,292...75,836,806
Ensembl chr 6:75,832,530...75,836,802
G
Sstr2
somatostatin receptor 2
IEP
RGD
PMID:9166718
RGD:2325007
NCBI chr10:98,664,204...98,671,370
Ensembl chr10:98,664,216...98,674,351
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Sstr3
somatostatin receptor 3
IEP
RGD
PMID:9166718
RGD:2325007
NCBI chr 7:110,092,563...110,109,043
Ensembl chr 7:110,092,575...110,099,769
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Tp53
tumor protein p53
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:24013501)
Ensembl RGD
PMID:24013501
GO_REF:0000107
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
G
Ttbk2
tau tubulin kinase 2
involved_in
ISO
(MGI:5700621|PMID:26323690)
RGD
PMID:26323690
MGI:5700621
NCBI chr 3:107,691,123...107,802,911
Ensembl chr 3:107,697,340...107,803,223
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Ttc21b
tetratricopeptide repeat domain 21B
acts_upstream_of_or_within
ISO
MGI:2152544|MGI:2179048|MGI:5587034 (PMID:29615573)
RGD
PMID:29615573
NCBI chr 3:50,861,367...50,935,880
Ensembl chr 3:50,861,367...50,935,903
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Wnt1
Wnt family member 1
involved_in
ISO
(MGI:82938|PMID:8848044)
RGD
PMID:8848044
MGI:82938
NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
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Zbtb18
zinc finger and BTB domain containing 18
acts_upstream_of_or_within
ISO
MGI:3851929 (PMID:19409883)
RGD
PMID:19409883
NCBI chr13:89,439,501...89,447,958
Ensembl chr13:89,439,420...89,448,862
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Wnt1
Wnt family member 1
involved_in
ISO
(MGI:1931348|PMID:2202907)
RGD
PMID:2202907
MGI:1931348
NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
G
Cacna1a
calcium voltage-gated channel subunit alpha1 A
acts_upstream_of_or_within
ISO
MGI:2180190 (PMID:11344116)
RGD
PMID:11344116
NCBI chr19:23,520,741...23,819,971
Ensembl chr19:23,520,741...23,823,225
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Abl1
ABL proto-oncogene 1, non-receptor tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:87860 (PMID:20980600)
RGD
PMID:20980600
NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065
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Abl2
ABL proto-oncogene 2, non-receptor tyrosine kinase
acts_upstream_of_or_within
ISO
MGI:87859 (PMID:20980600)
RGD
PMID:20980600
NCBI chr13:68,673,702...68,770,846
Ensembl chr13:68,673,722...68,839,742
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Cbs
cystathionine beta synthase
acts_upstream_of_or_within
ISO
MGI:1857139 (PMID:16160063)
RGD
PMID:16160063
NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
G
Gas1
growth arrest-specific 1
acts_upstream_of_or_within
ISO
MGI:2388397 (PMID:11456442)
RGD
PMID:11456442
NCBI chr17:4,482,168...4,485,153
G
Gnpat
glyceronephosphate O-acyltransferase
acts_upstream_of_or_within
ISO
MGI:2670461 (PMID:19270340)
RGD
PMID:19270340
NCBI chr19:52,822,326...52,848,872
Ensembl chr19:52,822,319...52,852,361
G
Lmx1b
LIM homeobox transcription factor 1 beta
acts_upstream_of_or_within
ISO
MGI:2158463 (PMID:17166916)
RGD
PMID:17166916
NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899
G
Lrp6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
MGI:2156191 (PMID:11029008)
RGD
PMID:11029008
NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
G
Skor2
SKI family transcriptional corepressor 2
acts_upstream_of_or_within
ISO
MGI:5300464 (PMID:21937600)
RGD
PMID:21937600
NCBI chr18:70,404,431...70,446,330
Ensembl chr18:70,404,489...70,440,342
G
Xrcc1
X-ray repair cross complementing 1
involved_in
ISO
(MGI:5902647|PMID:28002403)
RGD
PMID:28002403
MGI:5902647
NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
G
Dab1
DAB adaptor protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1861918 (PMID:9338785)
Ensembl RGD
PMID:9338785
GO_REF:0000107
NCBI chr 5:118,392,953...119,513,625
Ensembl chr 5:119,140,533...119,510,552
G
Hspa5
heat shock protein family A (Hsp70) member 5
involved_in
ISO IEA
(MGI:4437543|PMID:19816510) GO_REF:0000107
RGD Ensembl
PMID:19816510
GO_REF:0000107 MGI:4437543
NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
G
Fzd4
frizzled class receptor 4
involved_in
ISO
(MGI:3621833|PMID:15035989)
RGD
PMID:15035989
MGI:3621833
NCBI chr 1:143,279,934...143,288,799
Ensembl chr 1:143,280,065...143,285,724
G
Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857134 (PMID:11027399)
Ensembl RGD
PMID:11027399
GO_REF:0000107
NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
G
Scrib
scribble planar cell polarity protein
acts_upstream_of_or_within
ISO
MGI:2139764 (PMID:20215345)
RGD
PMID:20215345
NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
G
Sec24b
SEC24 homolog B, COPII coat complex component
acts_upstream_of_or_within
ISO
MGI:2145950|MGI:4440621 (PMID:20215345)
RGD
PMID:20215345
NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
G
Slc4a7
solute carrier family 4 member 7
acts_upstream_of_or_within
ISO
MGI:2682641 (PMID:12808454)
RGD
PMID:12808454
NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781
G
Atf2
activating transcription factor 2
involved_in
IEA ISO
GO_REF:0000107 MGI:3720850 (PMID:21533046)
Ensembl RGD
PMID:21533046
GO_REF:0000107
NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
G
Hoxa1
homeobox A1
acts_upstream_of_or_within
ISO
MGI:1857504 (PMID:8102800)
RGD
PMID:8102800
NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
G
Hoxb1
homeo box B1
acts_upstream_of_or_within
ISO
MGI:1857824 (PMID:8898234)
RGD
PMID:8898234
NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836
G
Arl13b
ADP-ribosylation factor like GTPase 13B
involved_in
ISO
(MGI:5528615|PMID:23817546)
RGD
PMID:23817546
MGI:5528615
NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197
G
Flna
filamin A
IMP
RGD
PMID:22076441
RGD:11564351
NCBI chr X:152,007,758...152,034,266
Ensembl chr X:152,007,758...152,031,052
G
Itgb1
integrin subunit beta 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2156945|MGI:2684610 (PMID:21185282)
Ensembl RGD
PMID:21185282
GO_REF:0000107
NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
G
Lef1
lymphoid enhancer binding factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1298218 (PMID:14715945)
Ensembl RGD
PMID:14715945
GO_REF:0000107
NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
G
Lrp6
LDL receptor related protein 6
acts_upstream_of_or_within
ISO
MGI:96770 (PMID:14715945)
RGD
PMID:14715945
NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
G
Kdm2b
lysine demethylase 2B
involved_in
ISO
(MGI:4949568|PMID:21220025)
RGD
PMID:21220025
MGI:4949568
NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
G
Myh10
myosin heavy chain 10
acts_upstream_of_or_within
ISO
MGI:2386445|MGI:3664764 (PMID:11283949), (PMID:16481398)
RGD
PMID:11283949 PMID:16481398
NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165
G
Dlc1
DLC1 Rho GTPase activating protein
acts_upstream_of_or_within
ISO
MGI:3529997 (PMID:15710412)
RGD
PMID:15710412
NCBI chr16:55,246,716...55,671,441
Ensembl chr16:55,291,584...55,671,439
G
Gsx2
GS homeobox 2
acts_upstream_of_or_within
ISO
MGI:2150162 (PMID:9398437)
RGD
PMID:9398437
NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105
G
Hes1
hes family bHLH transcription factor 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:104877 (PMID:11500373)
Ensembl RGD
PMID:11500373
GO_REF:0000107
NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
G
Hes3
hes family bHLH transcription factor 3
acts_upstream_of_or_within
ISO
MGI:104853 (PMID:11500373)
RGD
PMID:11500373
NCBI chr 5:162,793,611...162,799,578
Ensembl chr 5:162,794,367...162,796,261
G
Ephb1
Eph receptor B1
IMP
RGD
PMID:28276447
RGD:127285619
NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839
G
Ephb2
Eph receptor B2
IMP
RGD
PMID:28276447
RGD:127285619
NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
G
Phox2b
paired-like homeobox 2b
acts_upstream_of_or_within
ISO
MGI:4418265 (PMID:21068058)
RGD
PMID:21068058
NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
G
Atf2
activating transcription factor 2
involved_in
IEA ISO
GO_REF:0000107 MGI:3720850 (PMID:21533046)
Ensembl RGD
PMID:21533046
GO_REF:0000107
NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
G
Phox2a
paired-like homeobox 2a
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2180328|MGI:4438118 (PMID:21068058), (PMID:9115735)
Ensembl RGD
PMID:9115735 PMID:21068058
GO_REF:0000107
NCBI chr 1:156,178,754...156,183,118
Ensembl chr 1:156,178,754...156,183,118
G
Phox2b
paired-like homeobox 2b
involved_in
ISO
(MGI:1098916|PMID:9374403)
RGD
PMID:9374403
MGI:1098916
NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
G
Kat2a
lysine acetyltransferase 2A
acts_upstream_of_or_within
ISO
MGI:3711317 (PMID:17325035)
RGD
PMID:17325035
NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
G
Otx1
orthodenticle homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:97451 (PMID:20816794)
Ensembl RGD
PMID:20816794
GO_REF:0000107
NCBI chr14:96,082,146...96,089,161
Ensembl chr14:96,082,151...96,089,086
G
Otx2
orthodenticle homeobox 2
acts_upstream_of_or_within
ISO
MGI:97450 (PMID:20816794)
RGD
PMID:20816794
NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
G
Wnt1
Wnt family member 1
acts_upstream_of_or_within
ISO
MGI:1857490 (PMID:2205396)
RGD
PMID:2205396
NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
G
Cend1
cell cycle exit and neuronal differentiation 1
acts_upstream_of_or_within
ISO
MGI:4831137 (PMID:20153830)
RGD
PMID:20153830
NCBI chr 1:196,525,153...196,528,152
Ensembl chr 1:196,523,920...196,528,302
G
Slc6a4
solute carrier family 6 member 4
IMP
RGD
PMID:18573488
RGD:4889489
NCBI chr10:61,824,208...61,858,924
Ensembl chr10:61,826,123...61,858,384
G
Atp1b2
ATPase Na+/K+ transporting subunit beta 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:6368077|PMID:2438288)
Ensembl RGD
PMID:2438288
GO_REF:0000107 MGI:6368077
NCBI chr10:54,318,698...54,324,933
Ensembl chr10:54,318,701...54,324,933
G
Uqcrq
ubiquinol-cytochrome c reductase, complex III subunit VII
involved_in
ISO
(MGI:3662936|PMID:16901643)
RGD
PMID:16901643
MGI:3662936
NCBI chr10:37,585,864...37,589,328
Ensembl chr10:37,586,888...37,589,169
G
Grin1
glutamate ionotropic receptor NMDA type subunit 1
acts_upstream_of_or_within
ISO
MGI:1928270 (PMID:8313466)
RGD
PMID:8313466
NCBI chr 3:8,103,680...8,130,603
Ensembl chr 3:8,103,680...8,130,603
G
Egf
epidermal growth factor
acts_upstream_of_or_within
ISO
(PMID:10027293)
RGD
PMID:10027293
NCBI chr 2:218,219,408...218,302,359
Ensembl chr 2:218,219,415...218,302,064
G
Fgf2
fibroblast growth factor 2
acts_upstream_of_or_within
ISO
(PMID:10027293)
RGD
PMID:10027293
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Gpr37l1
G protein-coupled receptor 37-like 1
acts_upstream_of_or_within
ISO
MGI:5439169 (PMID:24062445)
RGD
PMID:24062445
NCBI chr13:46,598,574...46,605,421
Ensembl chr13:46,598,578...46,605,421
G
Igf1
insulin-like growth factor 1
acts_upstream_of_or_within
ISO
(PMID:10027293)
RGD
PMID:10027293
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
G
Shh
sonic hedgehog signaling molecule
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:10027293)
Ensembl RGD
PMID:10027293
GO_REF:0000107
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
G
Cend1
cell cycle exit and neuronal differentiation 1
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 MGI:4831137 (PMID:20153830)
GO_Central RGD
PMID:20153830
GO_REF:0000033
NCBI chr 1:196,525,153...196,528,152
Ensembl chr 1:196,523,920...196,528,302
G
Ulk1
unc-51 like autophagy activating kinase 1
acts_upstream_of_or_within
ISO
(PMID:10624947)
RGD
PMID:10624947
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
G
Ctnna2
catenin alpha 2
involved_in
ISO
(MGI:2181860|PMID:12089526), (MGI:3621696|PMID:12123610)
RGD
PMID:12089526 PMID:12123610
MGI:2181860 MGI:3621696
NCBI chr 4:109,294,249...110,443,409
Ensembl chr 4:109,293,978...110,443,522
G
Cul5
cullin 5
acts_upstream_of_or_within
ISO
(PMID:24210661)
RGD
PMID:24210661
NCBI chr 8:54,012,963...54,066,751
Ensembl chr 8:54,016,006...54,066,666
G
Dab1
DAB adaptor protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1337096|MGI:1861918 (PMID:24210661), (PMID:9338785)
Ensembl RGD
PMID:9338785 PMID:24210661
GO_REF:0000107
NCBI chr 5:118,392,953...119,513,625
Ensembl chr 5:119,140,533...119,510,552
G
Rbfox2
RNA binding fox-1 homolog 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:4838182 (PMID:22357600)
Ensembl RGD
PMID:22357600
GO_REF:0000107
NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691
G
Rere
arginine-glutamic acid dipeptide repeats
acts_upstream_of_or_within
ISO
MGI:3577419 (PMID:24466353)
RGD
PMID:24466353
NCBI chr 5:160,765,855...161,097,678
Ensembl chr 5:160,765,934...161,097,677
G
Rnf7
ring finger protein 7
acts_upstream_of_or_within
ISO
MGI:108554 (PMID:24210661)
RGD
PMID:24210661
NCBI chr 8:97,038,845...97,048,080
Ensembl chr 8:97,038,840...97,047,824
G
Socs7
suppressor of cytokine signaling 7
acts_upstream_of_or_within
ISO
(PMID:24210661)
RGD
PMID:24210661
NCBI chr10:82,352,159...82,388,829
Ensembl chr10:82,351,680...82,388,830
G
Skor2
SKI family transcriptional corepressor 2
acts_upstream_of_or_within
ISO
MGI:5300464 (PMID:21937600)
RGD
PMID:21937600
NCBI chr18:70,404,431...70,446,330
Ensembl chr18:70,404,489...70,440,342
G
Phox2b
paired-like homeobox 2b
involved_in
ISO
(MGI:4418003|PMID:19940179)
RGD
PMID:19940179
MGI:4418003
NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
G
Gbx2
gastrulation brain homeobox 2
acts_upstream_of_or_within
ISO
MGI:1857634 (PMID:16651541)
RGD
PMID:16651541
NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
G
Hoxa2
homeobox A2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857626 (PMID:7508007)
Ensembl RGD
PMID:7508007
GO_REF:0000107
NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044
G
Egr2
early growth response 2
acts_upstream_of_or_within
ISO
MGI:96170 (PMID:9806922)
RGD
PMID:9806922
NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562
G
Hoxa1
homeobox A1
acts_upstream_of_or_within
ISO
MGI:1857504|MGI:95296 (PMID:9806922)
RGD
PMID:9806922
NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
G
Hoxa2
homeobox A2
acts_upstream_of_or_within
ISO
MGI:96183 (PMID:7508007)
RGD
PMID:7508007
NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044
G
Hoxb2
homeobox B2
acts_upstream_of_or_within
ISO
MGI:96174 (PMID:10230789)
RGD
PMID:10230789
NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192
G
Egr2
early growth response 2
acts_upstream_of_or_within
ISO
MGI:1857507 (PMID:7903221)
RGD
PMID:7903221
NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562
G
Hoxa2
homeobox A2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857626 (PMID:10230789)
Ensembl RGD
PMID:10230789
GO_REF:0000107
NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044
G
Egr2
early growth response 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:52248|PMID:8093858)
UniProt RGD
PMID:8093858
GO_REF:0000024 MGI:52248
NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562
G
Hoxa1
homeobox A1
acts_upstream_of_or_within
ISO
MGI:1857504|MGI:96182 (PMID:10529420), (PMID:8102800), (PMID:9806922)
RGD
PMID:8102800 PMID:9806922 PMID:10529420
NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
G
Hoxb1
homeo box B1
acts_upstream_of_or_within
ISO
MGI:96170 (PMID:10529420)
RGD
PMID:10529420
NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836
G
Hoxb2
homeobox B2
acts_upstream_of_or_within
ISO
MGI:96174 (PMID:10230789)
RGD
PMID:10230789
NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192
G
Hoxa1
homeobox A1
acts_upstream_of_or_within
ISO
MGI:1857504|MGI:96182 (PMID:10529420), (PMID:8102800), (PMID:9806922)
RGD
PMID:8102800 PMID:9806922 PMID:10529420
NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
G
Hoxb1
homeo box B1
acts_upstream_of_or_within
ISO
MGI:96170 (PMID:10529420)
RGD
PMID:10529420
NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836
G
Mafb
MAF bZIP transcription factor B
acts_upstream_of_or_within
ISO
MGI:1856419 (PMID:7925021)
RGD
PMID:7925021
NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031
G
Egr2
early growth response 2
acts_upstream_of_or_within
ISO
MGI:1857507 (PMID:7903221)
RGD
PMID:7903221
NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562
G
Egr2
early growth response 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:52248|PMID:8093858), (MGI:6393337|PMID:11823429)
UniProt RGD
PMID:8093858 PMID:11823429
GO_REF:0000024 MGI:52248 MGI:6393337
NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562
G
Mafb
MAF bZIP transcription factor B
acts_upstream_of_or_within
ISO
MGI:1856419 (PMID:7925021)
RGD
PMID:7925021
NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031
G
Hoxb1
homeo box B1
acts_upstream_of_or_within
ISO
(PMID:21320481)
RGD
PMID:21320481
NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836
G
Hoxb3
homeo box B3
acts_upstream_of_or_within
ISO
(PMID:21320481)
RGD
PMID:21320481
NCBI chr10:81,258,739...81,314,134
Ensembl chr10:81,299,357...81,313,107
G
Pax6
paired box 6
IMP
RGD
PMID:21501682
RGD:8552349
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
G
Cdk5r1
cyclin-dependent kinase 5 regulatory subunit 1
acts_upstream_of_or_within
ISO
MGI:1330828 (PMID:11517264)
RGD
PMID:11517264
NCBI chr10:65,484,266...65,485,467
Ensembl chr10:65,483,941...65,488,456
G
Cdk5r2
cyclin-dependent kinase 5 regulatory subunit 2
acts_upstream_of_or_within
ISO
MGI:101764 (PMID:11517264)
RGD
PMID:11517264
NCBI chr 9:76,416,251...76,417,719
Ensembl chr 9:76,416,062...76,418,344
G
Ascl1
achaete-scute family bHLH transcription factor 1
acts_upstream_of_or_within
ISO
MGI:1857470 (PMID:12885554)
RGD
PMID:12885554
NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993
G
Cacna1a
calcium voltage-gated channel subunit alpha1 A
acts_upstream_of_or_within
ISO
MGI:1856210 (PMID:8719615)
RGD
PMID:8719615
NCBI chr19:23,520,741...23,819,971
Ensembl chr19:23,520,741...23,823,225
G
Kcne1
potassium voltage-gated channel subfamily E regulatory subunit 1
involved_in
ISO
MGI:1857442 (PMID:11223304)
RGD
PMID:11223304
NCBI chr11:31,580,951...31,594,116
Ensembl chr11:31,580,742...31,593,901
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all