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ONTOLOGY REPORT - ANNOTATIONS


Term:hindbrain development
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Accession:GO:0030902 term browser browse the term
Definition:The process whose specific outcome is the progression of the hindbrain over time, from its formation to the mature structure. The hindbrain is the posterior of the three primary divisions of the developing chordate brain, or the corresponding part of the adult brain (in vertebrates, includes the cerebellum, pons, and medulla oblongata and controls the autonomic functions and equilibrium).
Synonyms:exact_synonym: rhombencephalon development



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hindbrain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:2180721 (PMID:15872003) RGD PMID:15872003 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Bmp5 bone morphogenetic protein 5 involved_in ISO UniProtKB:P23359 (PMID:10079236) RGD PMID:10079236 NCBI chr 8:85,397,629...85,520,374
Ensembl chr 8:76,517,164...76,639,925
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO UniProtKB:P49003 (PMID:10079236) RGD PMID:10079236 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:11262227)
Ensembl
RGD
PMID:11262227 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO MGI:95390 (PMID:15607945) RGD PMID:15607945 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943
JBrowse link
G En2 engrailed homeobox 2 acts_upstream_of_or_within ISO MGI:95389 (PMID:15607945) RGD PMID:15607945 NCBI chr 4:7,954,953...7,960,793
Ensembl chr 4:7,221,096...7,226,943
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (PMID:15829521), (PMID:16651541) RGD PMID:15829521 PMID:16651541 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857164|MGI:1857509|MGI:98297 (PMID:15496441), (PMID:8575294) RGD PMID:8575294 PMID:15496441 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176174|MGI:2670936 (PMID:15872003)
Ensembl
RGD
PMID:15872003 GO_REF:0000107 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069 (PMID:15367676) RGD PMID:15367676 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:2148229 (PMID:16368089) RGD PMID:16368089 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Neurog3 neurogenin 3 IEP RGD PMID:9130143 RGD:633362 NCBI chr20:30,622,533...30,624,015
Ensembl chr20:30,079,780...30,081,262
JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO MGI:3530139 (PMID:15632069) RGD PMID:15632069 NCBI chr 5:101,805,168...102,020,618
Ensembl chr 5:96,764,653...96,975,479
JBrowse link
G Pax6 paired box 6 IDA
IMP
RGD PMID:11880342 PMID:20082710 RGD:729590, RGD:8552345 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO
GO_REF:0000024
(PMID:11318877)
HGNC
RGD
PMID:11318877 GO_REF:0000024 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:9749725 RGD:9831452 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1934268|MGI:2387802|MGI:95728 (PMID:15183722), (PMID:15496441)
UniProt
RGD
PMID:15183722 PMID:15496441 GO_REF:0000024 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2157982 (PMID:15899870)
Ensembl
RGD
PMID:15899870 GO_REF:0000107 NCBI chr19:45,417,430...45,477,962
Ensembl chr19:28,513,131...28,573,651
JBrowse link
G Smad9 SMAD family member 9 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3581766 (PMID:15899870)
Ensembl
RGD
PMID:15899870 GO_REF:0000107 NCBI chr 2:141,106,668...141,156,477
Ensembl chr 2:138,986,471...139,006,307
JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO MGI:2176173|MGI:3605892 (PMID:16330018) RGD PMID:16330018 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO MGI:2179766 (PMID:16540585) RGD PMID:16540585 NCBI chr 3:66,758,805...66,769,626
Ensembl chr 3:46,351,213...46,361,041
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IEP RGD PMID:11231055 RGD:2302116 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO (PMID:20614471) RGD PMID:20614471 NCBI chr 2:251,590,653...251,705,991
Ensembl chr 2:248,931,903...249,048,298
JBrowse link
abducens nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3720850 (PMID:21533046)
Ensembl
RGD
PMID:21533046 GO_REF:0000107 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
cell differentiation in hindbrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1347476|MGI:2176222|MGI:2177337 (PMID:17922007) RGD PMID:17922007 NCBI chr 3:155,923,305...155,927,508
Ensembl chr 3:135,470,131...135,474,326
JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:1857743 (PMID:10357893) RGD PMID:10357893 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Nog noggin involved_in ISO
IEA
(PMID:8582276)
GO_REF:0000107
RGD
Ensembl
PMID:8582276 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Phox2b paired-like homeobox 2b acts_upstream_of_or_within ISO MGI:1926861 (PMID:17922007) RGD PMID:17922007 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,066,264...41,068,978
JBrowse link
cell migration in hindbrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nhlh2 nescient helix loop helix 2 acts_upstream_of_or_within ISO UniProtKB:Q02576 (PMID:17573818) RGD PMID:17573818 NCBI chr 2:189,444,287...189,449,625
Ensembl chr 2:189,442,711...189,449,625
JBrowse link
G Pou4f1 POU class 4 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3512302 (PMID:8955272)
Ensembl
RGD
PMID:8955272 GO_REF:0000107 NCBI chr15:87,668,328...87,674,643
Ensembl chr15:81,257,781...81,259,728
JBrowse link
G Sema4c semaphorin 4C involved_in ISO (PMID:21122816) RGD PMID:21122816 NCBI chr 9:46,287,540...46,298,041
Ensembl chr 9:38,791,670...38,802,128
JBrowse link
cell proliferation in external granule layer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10970885) RGD PMID:10970885 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
cell proliferation in hindbrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C5ar1 complement C5a receptor 1 IMP RGD PMID:18635264 RGD:5129699 NCBI chr 1:86,077,309...86,088,001 JBrowse link
cerebellar cortex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtr2 angiotensin II receptor, type 2 IMP RGD PMID:19682991 RGD:6903898 NCBI chr  X:116,914,320...116,918,504
Ensembl chr  X:112,120,228...112,124,057
JBrowse link
G Cdk5 cyclin-dependent kinase 5 acts_upstream_of_or_within ISO MGI:1861809 (PMID:8855328) RGD PMID:8855328 NCBI chr 4:11,647,098...11,651,606
Ensembl chr 4:10,754,687...10,760,112
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 involved_in ISO
ISS
(PMID:24766809), (PMID:24766810)
GO_REF:0000024
RGD
UniProt
PMID:24766809 PMID:24766810 GO_REF:0000024 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Dixdc1 DIX domain containing 1 IMP RGD PMID:19339625 RGD:2308917 NCBI chr 8:59,904,218...59,977,595
Ensembl chr 8:51,007,838...51,081,090
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:2661097 (PMID:20798045) RGD PMID:20798045 NCBI chr 4:77,624,223...77,698,598
Ensembl chr 4:76,624,399...76,687,362
JBrowse link
G Fktn fukutin acts_upstream_of_or_within ISO (PMID:29360985) RGD PMID:29360985 NCBI chr 5:73,134,746...73,191,772
Ensembl chr 5:68,340,028...68,396,409
JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (PMID:23308235) RGD PMID:23308235 NCBI chr13:50,478,646...50,542,256
Ensembl chr13:47,927,044...47,989,164
JBrowse link
G Neurod2 neuronal differentiation 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:16504944)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:16504944 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,323,801...83,327,986
Ensembl chr10:83,324,442...83,327,986
JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in IEA
ISO
GO_REF:0000107
(PMID:16901643)
Ensembl
RGD
PMID:16901643 GO_REF:0000107 NCBI chr14:85,363,949...85,431,405
Ensembl chr14:81,150,091...81,217,479
JBrowse link
cerebellar cortex formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin-dependent kinase 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861809 (PMID:10407039)
Ensembl
RGD
PMID:10407039 GO_REF:0000107 NCBI chr 4:11,647,098...11,651,606
Ensembl chr 4:10,754,687...10,760,112
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99511 (PMID:24431450)
Ensembl
RGD
PMID:24431450 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346866|MGI:4868451 (PMID:24431450)
Ensembl
RGD
PMID:24431450 GO_REF:0000107 NCBI chr12:41,026,079...41,085,577
Ensembl chr12:35,383,144...35,424,925
JBrowse link
cerebellar cortex morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase acts_upstream_of_or_within ISO MGI:2178542 (PMID:28556830) RGD PMID:28556830 NCBI chr11:96,072,371...96,091,956
Ensembl chr11:82,568,025...82,587,642
JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO MGI:95728 (PMID:16571625) RGD PMID:16571625 NCBI chr 7:65,042,237...65,054,888
Ensembl chr 7:63,156,926...63,169,251
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:2446434|MGI:3664541|MGI:95727 (PMID:16571625) RGD PMID:16571625 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802571 (PMID:30503862) RGD PMID:30503862 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO MGI:3799303 (PMID:20096683) RGD PMID:20096683 NCBI chr20:12,189,767...12,278,179
Ensembl chr20:12,191,648...12,278,710
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176173|MGI:2176256 (PMID:16571625)
Ensembl
RGD
PMID:16571625 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Trnp1 TMF1-regulated nuclear protein 1 involved_in ISO (PMID:23622239) RGD PMID:23622239 NCBI chr 5:150,990,312...150,997,148
Ensembl chr 5:145,706,094...145,713,272
JBrowse link
G Tuba1a tubulin, alpha 1A involved_in ISO MGI:3617352 (PMID:17218254) RGD PMID:17218254 NCBI chr 7:131,992,151...131,996,850
Ensembl chr 7:130,081,032...130,196,186
JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp9x ubiquitin specific peptidase 9, X-linked acts_upstream_of_or_within ISO MGI:5438072 (PMID:23861879) RGD PMID:23861879 NCBI chr  X:12,261,633...12,399,780
Ensembl chr  X:9,588,825...9,696,711
JBrowse link
cerebellar granular layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21957071)
UniProt
Ensembl
RGD
PMID:21957071 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:132,512,095...132,539,192
Ensembl chr 7:130,633,348...130,659,168
JBrowse link
G Mdk midkine involved_in IEA
ISO
GO_REF:0000107
(PMID:10096022)
Ensembl
RGD
PMID:10096022 GO_REF:0000107 NCBI chr 3:98,356,789...98,358,960
Ensembl chr 3:77,901,158...77,903,130
JBrowse link
G Ttbk2 tau tubulin kinase 2 involved_in ISO (PMID:26323690) RGD PMID:26323690 NCBI chr 3:128,144,851...128,256,630
Ensembl chr 3:107,697,340...107,803,223
JBrowse link
cerebellar granular layer maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cend1 cell cycle exit and neuronal differentiation 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:4831137 (PMID:20153830)
GO_Central
RGD
PMID:20153830 GO_REF:0000033 NCBI chr 1:196,525,153...196,528,152
Ensembl chr 1:196,523,920...196,528,302
JBrowse link
cerebellar granular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpine2 serpin family E member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2387774 (PMID:17409116)
Ensembl
RGD
PMID:17409116 GO_REF:0000107 NCBI chr 9:88,573,138...88,637,252
Ensembl chr 9:81,124,804...81,188,826
JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 involved_in ISO (PMID:23308235) RGD PMID:23308235 NCBI chr13:50,478,646...50,542,256
Ensembl chr13:47,927,044...47,989,164
JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Cbln1 cerebellin 1 precursor involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61625 (PMID:20537373)
BHF-UCL
RGD
PMID:20537373 GO_REF:0000024 NCBI chr19:35,782,151...35,785,960
Ensembl chr19:19,608,716...19,612,572
JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q9R171 (PMID:20537373)
BHF-UCL
RGD
PMID:20537373 GO_REF:0000024 NCBI chr 4:93,745,165...95,222,354
Ensembl chr 4:92,415,230...93,889,355
JBrowse link
G Kndc1 kinase non-catalytic C-lobe domain containing 1 acts_upstream_of_or_within ISO (PMID:17984326) RGD PMID:17984326 NCBI chr 1:194,689,962...194,738,353
Ensembl chr 1:194,690,135...194,738,362
JBrowse link
G Mtpn myotrophin IEP RGD PMID:8144589 RGD:632797 NCBI chr 4:64,159,273...64,186,686
Ensembl chr 4:64,157,641...64,186,724
JBrowse link
G Nfix nuclear factor I X involved_in
acts_upstream_of_or_within
ISO MGI:3802571 (PMID:23042739)
MGI:3802571 (PMID:21800304)
RGD PMID:21800304 PMID:23042739 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61625|UniProtKB:Q9R171 (PMID:20537373)
BHF-UCL
RGD
PMID:20537373 GO_REF:0000024 NCBI chr 6:8,931,360...10,077,381
Ensembl chr 6:3,177,897...4,322,710
JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:27160703) RGD PMID:27160703 NCBI chr  X:67,639,956...68,018,217
Ensembl chr  X:63,603,042...63,976,633
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:20808958) RGD PMID:20808958 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Top2a DNA topoisomerase II alpha IEP RGD PMID:11170002 RGD:8693630 NCBI chr10:84,441,954...84,473,093
Ensembl chr10:83,945,735...83,976,874
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (PMID:10624947) RGD PMID:10624947 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO (PMID:9405095) RGD PMID:9405095 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
cerebellar granule cell precursor proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:22095825)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22095825 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:104,432,094...104,437,611
Ensembl chr 1:95,295,610...95,299,707
JBrowse link
G Egf epidermal growth factor acts_upstream_of ISO (PMID:10027293) RGD PMID:10027293 NCBI chr 2:220,893,660...220,976,331
Ensembl chr 2:218,219,415...218,302,064
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of ISO (PMID:10027293) RGD PMID:10027293 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (PMID:16651541) RGD PMID:16651541 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212
JBrowse link
G Igf1 insulin-like growth factor 1 acts_upstream_of ISO (PMID:10027293) RGD PMID:10027293 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Psmg1 proteasome assembly chaperone 1 acts_upstream_of_or_within ISO MGI:4820730 (PMID:20498273) RGD PMID:20498273 NCBI chr11:48,745,581...48,755,040
Ensembl chr11:35,276,011...35,285,622
JBrowse link
G Rere arginine-glutamic acid dipeptide repeats acts_upstream_of_or_within ISO MGI:3577419 (PMID:24466353) RGD PMID:24466353 NCBI chr 5:166,048,770...166,380,559
Ensembl chr 5:160,765,934...161,097,677
JBrowse link
G Rora RAR-related orphan receptor A involved_in ISO UniProtKB:Q62226 (PMID:14687547) RGD PMID:14687547 NCBI chr 8:78,182,710...78,915,730
Ensembl chr 8:69,301,733...70,025,931
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of
ISS
ISO
IEA
GO_REF:0000024
UniProtKB:P51448 (PMID:14687547), (PMID:22095825)
(PMID:10027293)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:10027293 PMID:14687547 PMID:22095825 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Zfp423 zinc finger protein 423 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:27727273)
Ensembl
RGD
PMID:27727273 GO_REF:0000107 NCBI chr19:35,282,149...35,580,775
Ensembl chr19:19,110,238...19,407,373
JBrowse link
cerebellar granule cell precursor tangential migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plxna2 plexin A2 acts_upstream_of_or_within ISO MGI:3793763|MGI:3793765 (PMID:18327254) RGD PMID:18327254 NCBI chr13:108,683,155...108,888,336
Ensembl chr13:106,163,103...106,358,979
JBrowse link
G Ttbk2 tau tubulin kinase 2 involved_in ISO (PMID:26323690) RGD PMID:26323690 NCBI chr 3:128,144,851...128,256,630
Ensembl chr 3:107,697,340...107,803,223
JBrowse link
cerebellar molecular layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856209|MGI:1856210 (PMID:7697385) RGD PMID:7697385 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225
JBrowse link
cerebellar molecular layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:23688253)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23688253 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
cerebellar molecular layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp365 zinc finger protein 365 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23912123)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23912123 GO_REF:0000024 GO_REF:0000107 NCBI chr20:20,665,122...20,688,607
Ensembl chr20:20,666,240...20,691,238
JBrowse link
cerebellar neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crk CRK proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:104686 (PMID:19074029) RGD PMID:19074029 NCBI chr10:61,028,736...61,054,971
Ensembl chr10:60,530,464...60,553,406
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:88508 (PMID:19074029) RGD PMID:19074029 NCBI chr11:97,033,033...97,067,457
Ensembl chr11:83,526,530...83,563,238
JBrowse link
G L1cam L1 cell adhesion molecule IMP RGD PMID:27027721 RGD:401959323 NCBI chr  X:156,748,597...156,775,116
Ensembl chr  X:151,597,277...151,623,857
JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 acts_upstream_of_or_within ISO (PMID:26609159) RGD PMID:26609159 NCBI chr 1:259,897,663...259,901,561
Ensembl chr 1:259,897,939...259,898,730
JBrowse link
G Samd4b sterile alpha motif domain containing 4B acts_upstream_of_or_within ISO (PMID:26609159) RGD PMID:26609159 NCBI chr 1:83,689,413...83,728,652
Ensembl chr 1:83,689,413...83,713,853
JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within
involved_in
ISO MGI:1856535|MGI:1857523|MGI:2443047|MGI:6270378 (PMID:10630211), (PMID:30420556)
(PMID:11884758), (PMID:16465590), (PMID:21074048)
RGD PMID:10630211 PMID:11884758 PMID:16465590 PMID:21074048 PMID:30420556 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856466 (PMID:2473662) RGD PMID:2473662 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Atxn2 ataxin 2 acts_upstream_of_or_within ISO MGI:3505741 (PMID:10973246) RGD PMID:10973246 NCBI chr12:34,754,132...34,851,175
Ensembl chr12:34,754,137...34,851,479
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856209|MGI:1856210 (PMID:10630211), (PMID:1306163), (PMID:7834360) RGD PMID:1306163 PMID:7834360 PMID:10630211 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225
JBrowse link
G Cend1 cell cycle exit and neuronal differentiation 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:4831137 (PMID:20153830)
GO_Central
RGD
PMID:20153830 GO_REF:0000033 NCBI chr 1:196,525,153...196,528,152
Ensembl chr 1:196,523,920...196,528,302
JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21957071)
UniProt
Ensembl
RGD
PMID:21957071 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:132,512,095...132,539,192
Ensembl chr 7:130,633,348...130,659,168
JBrowse link
G Foxp2 forkhead box P2 involved_in ISO MGI:3778383 (PMID:22133810) RGD PMID:22133810 NCBI chr 4:44,099,848...44,677,700
Ensembl chr 4:43,133,912...43,711,683
JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within ISO MGI:3613033 (PMID:20041218) RGD PMID:20041218 NCBI chr 8:75,796,347...75,965,347
Ensembl chr 8:66,856,935...67,070,312
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO MGI:3719683 (PMID:17664423) RGD PMID:17664423 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:107792 (PMID:17664423)
UniProt
RGD
PMID:17664423 GO_REF:0000024 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lhx5 LIM homeobox 5 acts_upstream_of_or_within ISO MGI:99783 (PMID:17664423) RGD PMID:17664423 NCBI chr12:41,786,746...41,795,183
Ensembl chr12:36,126,186...36,134,625
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO MGI:3521746 (PMID:15345707) RGD PMID:15345707 NCBI chr20:28,756,951...28,783,422
Ensembl chr20:28,214,271...28,240,498
JBrowse link
G Rora RAR-related orphan receptor A acts_upstream_of_or_within ISO MGI:1857035 (PMID:8996814) RGD PMID:8996814 NCBI chr 8:78,182,710...78,915,730
Ensembl chr 8:69,301,733...70,025,931
JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO MGI:5300464 (PMID:21937600), (PMID:24491816) RGD PMID:21937600 PMID:24491816 NCBI chr18:70,404,431...70,446,330
Ensembl chr18:70,404,489...70,440,342
JBrowse link
G Slc25a46 solute carrier family 25, member 46 acts_upstream_of_or_within ISO MGI:6358090 (PMID:28934388) RGD PMID:28934388 NCBI chr18:23,215,954...23,244,917
Ensembl chr18:23,215,962...23,244,314
JBrowse link
G Top2a DNA topoisomerase II alpha IEP RGD PMID:11170002 RGD:8693630 NCBI chr10:84,441,954...84,473,093
Ensembl chr10:83,945,735...83,976,874
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2137515|MGI:2152544|MGI:2179048|MGI:5587034 (PMID:29615573) RGD PMID:29615573 NCBI chr 3:71,269,425...71,343,936
Ensembl chr 3:50,861,367...50,935,903
JBrowse link
G Ttll1 TTL family tubulin polyglutamylase complex subunit L1 acts_upstream_of_or_within ISO MGI:1918244 (PMID:30420556) RGD PMID:30420556 NCBI chr 7:116,499,536...116,528,833
Ensembl chr 7:114,619,508...114,648,761
JBrowse link
cerebellar Purkinje cell layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars1 alanyl-tRNA synthetase 1 acts_upstream_of_or_within ISO MGI:3618596 (PMID:16906134) RGD PMID:16906134 NCBI chr19:55,906,694...55,930,499
Ensembl chr19:38,999,163...39,021,147
JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO MGI:2386545|MGI:3587769 (PMID:16625205), (PMID:20577052) RGD PMID:16625205 PMID:20577052 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593
JBrowse link
G B4galt2 beta-1,4-galactosyltransferase 2 acts_upstream_of_or_within ISO MGI:3849305 (PMID:19265195) RGD PMID:19265195 NCBI chr 5:136,697,981...136,707,783
Ensembl chr 5:131,412,541...131,421,013
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856209|MGI:1856210 (PMID:1306163) RGD PMID:1306163 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225
JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:21957071)
UniProt
RGD
PMID:21957071 GO_REF:0000024 NCBI chr 7:132,512,095...132,539,192
Ensembl chr 7:130,633,348...130,659,168
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:19816510)
Ensembl
RGD
PMID:19816510 GO_REF:0000107 NCBI chr 3:38,453,016...38,457,475
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
G Klhl1 kelch-like family member 1 acts_upstream_of_or_within ISO MGI:3664534|MGI:3664543 (PMID:17005861) RGD PMID:17005861 NCBI chr15:72,698,191...73,142,726
Ensembl chr15:72,699,094...73,142,594
JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:3664765 (PMID:16481398) RGD PMID:16481398 NCBI chr10:53,891,955...54,024,032
Ensembl chr10:53,394,389...53,525,165
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:17712420) RGD PMID:17712420 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972
JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802571 (PMID:21800304) RGD PMID:21800304 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Sez6 seizure related 6 homolog acts_upstream_of_or_within ISO MGI:1935121|MGI:2385295 (PMID:16814779) RGD PMID:16814779 NCBI chr10:62,818,931...62,868,686
Ensembl chr10:62,819,069...62,868,671
JBrowse link
G Sez6l seizure related 6 homolog like acts_upstream_of_or_within ISO MGI:104745|MGI:2385295 (PMID:16814779) RGD PMID:16814779 NCBI chr12:44,064,901...44,221,814
Ensembl chr12:44,064,935...44,219,663
JBrowse link
G Sez6l2 seizure related 6 homolog like 2 acts_upstream_of_or_within ISO MGI:104745|MGI:1935121 (PMID:16814779) RGD PMID:16814779 NCBI chr 1:181,557,109...181,577,456
Ensembl chr 1:181,557,109...181,577,456
JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII involved_in ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,086,691...38,093,871
Ensembl chr10:37,586,888...37,589,169
JBrowse link
cerebellar Purkinje cell layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:17954912) RGD PMID:17954912 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263
JBrowse link
G Whrn whirlin involved_in IEA
ISO
GO_REF:0000107
(PMID:24011083)
Ensembl
RGD
PMID:24011083 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
cerebellar Purkinje cell layer maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arcn1 archain 1 acts_upstream_of_or_within ISO MGI:2671790 (PMID:20502676) RGD PMID:20502676 NCBI chr 8:53,954,401...53,979,005
Ensembl chr 8:45,057,619...45,082,247
JBrowse link
G Rere arginine-glutamic acid dipeptide repeats acts_upstream_of_or_within ISO MGI:3577419 (PMID:24466353) RGD PMID:24466353 NCBI chr 5:166,048,770...166,380,559
Ensembl chr 5:160,765,934...161,097,677
JBrowse link
cerebellar Purkinje cell layer morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:17409239) RGD PMID:17409239 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:32675284) RGD PMID:32675284 NCBI chr 4:75,109,358...77,366,258
Ensembl chr 4:74,109,472...76,362,027
JBrowse link
G Coq8b coenzyme Q8B involved_in ISS
ISO
GO_REF:0000024
(PMID:27499294)
UniProt
RGD
PMID:27499294 GO_REF:0000024 NCBI chr 1:82,525,578...82,549,182
Ensembl chr 1:82,526,568...82,549,180
JBrowse link
G Sptbn2 spectrin, beta, non-erythrocytic 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4127354 (PMID:20231455)
Ensembl
RGD
PMID:20231455 GO_REF:0000107 NCBI chr 1:211,432,373...211,473,016
Ensembl chr 1:202,002,970...202,044,283
JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:23688253)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23688253 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (PMID:23308235) RGD PMID:23308235 NCBI chr13:50,478,646...50,542,256
Ensembl chr13:47,927,044...47,989,164
JBrowse link
cerebellum development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase IEP RGD PMID:7182074 RGD:10047093 NCBI chr10:7,503,351...7,599,474
Ensembl chr10:6,999,819...7,092,835
JBrowse link
G Acvr1c activin A receptor type 1C IEP RGD PMID:8940033 RGD:631880 NCBI chr 3:63,224,322...63,301,252
Ensembl chr 3:42,822,610...42,892,327
JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within ISO MGI:1856535 (PMID:7891151) RGD PMID:7891151 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
JBrowse link
G Aif1 allograft inflammatory factor 1 IEP RGD PMID:9698327 RGD:704401 NCBI chr20:3,651,435...3,657,341
Ensembl chr20:3,646,777...3,652,668
JBrowse link
G Ak1 adenylate kinase 1 IEP RGD PMID:9920788 RGD:632499 NCBI chr 3:36,310,113...36,320,760
Ensembl chr 3:15,912,485...15,923,041
JBrowse link
G Ak3 adenylate kinase 3 IEP RGD PMID:9920788 RGD:632499 NCBI chr 1:236,151,012...236,178,689
Ensembl chr 1:226,739,318...226,764,625
JBrowse link
G Amigo2 adhesion molecule with Ig like domain 2 IEP RGD PMID:12843293 RGD:1299593 NCBI chr 7:128,391,493...128,394,589
Ensembl chr 7:128,390,412...128,394,695
JBrowse link
G Arhgap32 Rho GTPase activating protein 32 IEP RGD PMID:23226367 RGD:151665335 NCBI chr 8:38,679,368...38,939,960
Ensembl chr 8:30,421,515...30,678,454
JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase IEP RGD PMID:7057182 RGD:2301991 NCBI chr 9:80,614,311...80,634,360
Ensembl chr 9:73,164,846...73,184,889
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:3664103 (PMID:16880690) RGD PMID:16880690 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Atrn attractin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856082 (PMID:18064672)
Ensembl
RGD
PMID:18064672 GO_REF:0000107 NCBI chr 3:138,563,271...138,697,360
Ensembl chr 3:118,110,229...118,244,322
JBrowse link
G Ccr1 C-C motif chemokine receptor 1 IEP RGD PMID:12541321 RGD:5688179 NCBI chr 8:132,433,711...132,439,266 JBrowse link
G Cd3e CD3 epsilon subunit of T-cell receptor complex involved_in ISO (PMID:17502348) RGD PMID:17502348 NCBI chr 8:54,200,617...54,211,770
Ensembl chr 8:45,303,852...45,315,022
JBrowse link
G Cdk5 cyclin-dependent kinase 5 acts_upstream_of_or_within ISO MGI:1861809 (PMID:11226314) RGD PMID:11226314 NCBI chr 4:11,647,098...11,651,606
Ensembl chr 4:10,754,687...10,760,112
JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1330828|MGI:2680652 (PMID:11226314), (PMID:11517264) RGD PMID:11226314 PMID:11517264 NCBI chr10:65,981,692...65,985,831
Ensembl chr10:65,483,941...65,488,456
JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO MGI:101764 (PMID:11517264) RGD PMID:11517264 NCBI chr 9:83,864,922...83,866,390
Ensembl chr 9:76,416,062...76,418,344
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A IEP RGD PMID:9693786 RGD:8552681 NCBI chr 5:109,100,763...109,114,448
Ensembl chr 5:103,984,949...104,003,149
JBrowse link
G Ckb creatine kinase B IEP RGD PMID:12093362 RGD:625711 NCBI chr 6:136,550,583...136,553,464
Ensembl chr 6:130,729,423...130,732,315
JBrowse link
G Ckmt1 creatine kinase, mitochondrial 1 IEP RGD PMID:12093362 RGD:625711 NCBI chr 3:128,783,408...128,789,485
Ensembl chr 3:108,330,705...108,335,758
JBrowse link
G Cntn1 contactin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3043422 (PMID:18354028)
Ensembl
RGD
PMID:18354028 GO_REF:0000107 NCBI chr 7:125,142,638...125,440,397
Ensembl chr 7:123,372,792...123,558,541
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:32675284) RGD PMID:32675284 NCBI chr 4:75,109,358...77,366,258
Ensembl chr 4:74,109,472...76,362,027
JBrowse link
G Cplane1 ciliogenesis and planar polarity effector complex subunit 1 acts_upstream_of_or_within ISO MGI:5297398 (PMID:25877302) RGD PMID:25877302 NCBI chr 2:58,996,119...59,096,817
Ensembl chr 2:57,268,884...57,369,500
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IEP RGD PMID:16820012 RGD:5131267 NCBI chr 4:85,553,163...85,596,203
Ensembl chr 4:84,224,002...84,265,904
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP RGD PMID:16329132 RGD:1599699 NCBI chr 8:67,318,665...67,330,196
Ensembl chr 8:58,404,669...58,434,338
JBrowse link
G En1 engrailed homeobox 1 involved_in ISO UniProtKB:P04426 (PMID:8848044) RGD PMID:8848044 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEP RGD PMID:18565716 RGD:13204724 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Esr2 estrogen receptor 2 IEP RGD PMID:16542644 RGD:1601098 NCBI chr 6:100,589,553...100,645,240
Ensembl chr 6:94,809,547...94,908,919
JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:21957071)
UniProt
RGD
PMID:21957071 GO_REF:0000024 NCBI chr 7:132,512,095...132,539,192
Ensembl chr 7:130,633,348...130,659,168
JBrowse link
G Fcgr2b Fc gamma receptor 2B involved_in ISO (PMID:17502348) RGD PMID:17502348 NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778
JBrowse link
G Foxc1 forkhead box C1 involved_in ISO (PMID:19668217) RGD PMID:19668217 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within ISO MGI:3584266|MGI:3723630 (PMID:15983371), (PMID:17619227) RGD PMID:15983371 PMID:17619227 NCBI chr 4:44,099,848...44,677,700
Ensembl chr 4:43,133,912...43,711,683
JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 acts_upstream_of_or_within ISO (PMID:17983671) RGD PMID:17983671 NCBI chr 1:117,602,772...117,838,230
Ensembl chr 1:108,296,124...108,698,961
JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase IEP RGD PMID:7057182 RGD:2301991 NCBI chr11:44,351,841...44,377,086
Ensembl chr11:30,865,889...30,891,125
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (PMID:16651541) RGD PMID:16651541 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212
JBrowse link
G Gdf10 growth differentiation factor 10 IEP RGD PMID:8605043 RGD:631791 NCBI chr16:9,243,434...9,256,788
Ensembl chr16:9,237,261...9,249,343
JBrowse link
G Glud1 glutamate dehydrogenase 1 IEP RGD PMID:7182074 RGD:10047093 NCBI chr16:9,646,569...9,680,215
Ensembl chr16:9,640,312...9,673,957
JBrowse link
G Gpx4 glutathione peroxidase 4 acts_upstream_of_or_within ISO (PMID:24599700) RGD PMID:24599700 NCBI chr 7:10,300,833...10,303,629
Ensembl chr 7:9,650,185...9,652,982
JBrowse link
G Hap1 huntingtin-associated protein 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:18636121)
Ensembl
RGD
PMID:18636121 GO_REF:0000107 NCBI chr10:85,778,267...85,786,553
Ensembl chr10:85,277,890...85,286,126
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IEP RGD PMID:19115409 RGD:10041070 NCBI chr14:9,918,630...9,938,072
Ensembl chr14:9,615,479...9,633,786
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:22102872 RGD:10002783 NCBI chr17:6,269,302...6,280,429
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IEP RGD PMID:9764759 RGD:10059383 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:41,183,264...41,187,259
JBrowse link
G Igf1r insulin-like growth factor 1 receptor IEP
IMP
RGD PMID:23397157 PMID:21443795 RGD:10403039, RGD:12904969 NCBI chr 1:130,959,787...131,248,664
Ensembl chr 1:121,550,743...121,831,777
JBrowse link
G Insr insulin receptor IEP RGD PMID:23397157 RGD:10403039 NCBI chr12:5,991,135...6,129,275
Ensembl chr12:1,197,100...1,330,883
JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 IEP RGD PMID:9526005 RGD:9685724 NCBI chr 1:96,902,953...96,944,744
Ensembl chr 1:96,902,953...96,944,744
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO MGI:3719683 (PMID:17664423) RGD PMID:17664423 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:107792 (PMID:17664423)
UniProt
RGD
PMID:17664423 GO_REF:0000024 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lhx5 LIM homeobox 5 acts_upstream_of_or_within ISO MGI:99783 (PMID:17664423) RGD PMID:17664423 NCBI chr12:41,786,746...41,795,183
Ensembl chr12:36,126,186...36,134,625
JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha acts_upstream_of_or_within ISO MGI:1888413 (PMID:1638738) RGD PMID:1638738 NCBI chr13:82,367,493...82,511,157
Ensembl chr13:79,835,019...79,978,253
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 IEP RGD PMID:9753172 RGD:2317716 NCBI chr 5:78,024,139...78,147,071
Ensembl chr 5:73,229,625...73,369,895
JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within IEP
ISO
MGI:2158354 (PMID:18571096) RGD PMID:18571096 PMID:14751287 RGD:12743658 NCBI chr  X:156,932,481...156,995,981
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Mt-co1 mitochondrially encoded cytochrome c oxidase I IEP RGD PMID:2465379 RGD:2302317 NCBI chr MT:5,323...6,867
Ensembl chr MT:5,323...6,867
JBrowse link
G Mt-nd4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 IEP RGD PMID:2465379 RGD:2302317 NCBI chr MT:10,160...11,537
Ensembl chr MT:10,160...11,537
JBrowse link
G Myo16 myosin XVI involved_in IEP PMID:11588169 HGNC-UCL PMID:11588169 RGD:633234 NCBI chr16:85,586,428...86,066,537
Ensembl chr16:78,884,406...79,248,388
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 IEP RGD PMID:10803578 PMID:15876152 RGD:2293531, RGD:5688232 NCBI chr 6:32,952,090...33,229,829
Ensembl chr 6:27,232,611...27,475,664
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 IEP RGD PMID:10803578 RGD:2293531 NCBI chr 5:10,618,712...10,852,776
Ensembl chr 5:5,835,706...6,067,451
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 IEP RGD PMID:10803578 RGD:2293531 NCBI chr 3:175,157,824...175,237,831
Ensembl chr 3:154,738,581...154,818,594
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 IEP RGD PMID:10803578 RGD:2293531 NCBI chr10:47,498,852...47,641,612
Ensembl chr10:46,999,536...47,141,032
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 IEP RGD PMID:10803578 RGD:2293531 NCBI chr12:37,127,736...37,289,612
Ensembl chr12:31,466,412...31,628,319
JBrowse link
G Ncstn nicastrin IEP RGD PMID:16298244 RGD:13801190 NCBI chr13:84,530,442...84,546,454
Ensembl chr13:84,530,440...84,546,454
JBrowse link
G Neurod1 neuronal differentiation 1 involved_in IEP
ISO
(PMID:10398678) RGD PMID:10398678 PMID:12242038 RGD:1625048 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802571 (PMID:21800304) RGD PMID:21800304 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Nr2c2 nuclear receptor subfamily 2, group C, member 2 involved_in ISO (PMID:20393820) RGD PMID:20393820 NCBI chr 4:126,167,350...126,223,942
Ensembl chr 4:124,608,960...124,661,902
JBrowse link
G Ntm neurotrimin IEP RGD PMID:12373100 RGD:2314481 NCBI chr 8:35,634,929...36,625,081
Ensembl chr 8:27,377,773...28,366,595
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 IEP RGD PMID:20395366 RGD:11533946 NCBI chr 1:161,522,399...161,637,623
Ensembl chr 1:152,111,188...152,226,383
JBrowse link
G Pax6 paired box 6 IEP RGD PMID:11688562 RGD:8552644 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pdss2 decaprenyl diphosphate synthase subunit 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:21871565)
UniProt
RGD
PMID:21871565 GO_REF:0000024 NCBI chr20:48,291,788...48,520,846
Ensembl chr20:46,709,649...46,938,708
JBrowse link
G Pfdn1 prefoldin subunit 1 acts_upstream_of_or_within ISO MGI:3800373 (PMID:18566413) RGD PMID:18566413 NCBI chr18:28,288,210...28,341,198
Ensembl chr18:28,014,145...28,067,064
JBrowse link
G Pianp PILR alpha associated neural protein acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31511635)
GO_REF:0000107
RGD
Ensembl
PMID:31511635 GO_REF:0000107 NCBI chr 4:159,482,678...159,491,085
Ensembl chr 4:157,798,808...157,804,842
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha IEP RGD PMID:17335037 RGD:10059646 NCBI chr14:63,073,505...63,729,215
Ensembl chr14:58,861,144...59,512,656
JBrowse link
G Prkg1 protein kinase cGMP-dependent 1 IEP RGD PMID:15763176 RGD:7777107 NCBI chr 1:237,818,950...239,052,184
Ensembl chr 1:228,408,947...229,639,080
JBrowse link
G Psen1 presenilin 1 IEP RGD PMID:16298244 RGD:13801190 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 IEP RGD PMID:9917071 RGD:10045971 NCBI chr 2:210,497,610...210,558,497
Ensembl chr 2:207,812,920...207,873,506
JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO
GO_REF:0000024
(PMID:15543146)
UniProt
RGD
PMID:15543146 GO_REF:0000024 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:8653419 RGD:10043831 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158734 (PMID:15842738)
Ensembl
RGD
PMID:15842738 GO_REF:0000107 NCBI chr 9:1,332,558...1,394,161
Ensembl chr 9:1,245,410...1,306,947
JBrowse link
G Rere arginine-glutamic acid dipeptide repeats acts_upstream_of_or_within ISO MGI:3577419 (PMID:24466353) RGD PMID:24466353 NCBI chr 5:166,048,770...166,380,559
Ensembl chr 5:160,765,934...161,097,677
JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17558409) RGD PMID:17558409 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083
JBrowse link
G Scn5a sodium voltage-gated channel alpha subunit 5 IEP RGD PMID:22331407 RGD:6484221 NCBI chr 8:128,098,613...128,196,515
Ensembl chr 8:119,220,905...119,318,769
JBrowse link
G Sdf4 stromal cell derived factor 4 involved_in IEP PMID:18355758 BHF-UCL PMID:18355758 RGD:8554427 NCBI chr 5:171,868,591...171,885,827
Ensembl chr 5:166,586,390...166,604,521
JBrowse link
G Sema4c semaphorin 4C involved_in ISO (PMID:21122816) RGD PMID:21122816 NCBI chr 9:46,287,540...46,298,041
Ensembl chr 9:38,791,670...38,802,128
JBrowse link
G Sstr1 somatostatin receptor 1 IEP RGD PMID:9166718 RGD:2325007 NCBI chr 6:81,567,237...81,571,759
Ensembl chr 6:75,832,530...75,836,802
JBrowse link
G Sstr2 somatostatin receptor 2 IEP RGD PMID:9166718 RGD:2325007 NCBI chr10:99,163,353...99,170,519
Ensembl chr10:98,664,216...98,674,351
JBrowse link
G Sstr3 somatostatin receptor 3 IEP RGD PMID:9166718 RGD:2325007 NCBI chr 7:111,973,049...111,980,250
Ensembl chr 7:110,092,575...110,099,769
JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:24013501)
Ensembl
RGD
PMID:24013501 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Ttbk2 tau tubulin kinase 2 involved_in ISO (PMID:26323690) RGD PMID:26323690 NCBI chr 3:128,144,851...128,256,630
Ensembl chr 3:107,697,340...107,803,223
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO MGI:2152544|MGI:2179048|MGI:5587034 (PMID:29615573) RGD PMID:29615573 NCBI chr 3:71,269,425...71,343,936
Ensembl chr 3:50,861,367...50,935,903
JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO (PMID:8848044) RGD PMID:8848044 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
G Zbtb18 zinc finger and BTB domain containing 18 acts_upstream_of_or_within ISO MGI:3851929 (PMID:19409883) RGD PMID:19409883 NCBI chr13:91,971,602...91,980,058
Ensembl chr13:89,439,420...89,448,862
JBrowse link
cerebellum formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 involved_in ISO (PMID:2202907) RGD PMID:2202907 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
cerebellum maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:2180190 (PMID:11344116) RGD PMID:11344116 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225
JBrowse link
cerebellum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87860 (PMID:20980600) RGD PMID:20980600 NCBI chr 3:35,377,587...35,480,843
Ensembl chr 3:14,979,853...15,083,065
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:87859 (PMID:20980600) RGD PMID:20980600 NCBI chr13:71,223,902...71,319,770
Ensembl chr13:68,673,722...68,839,742
JBrowse link
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO MGI:1857139 (PMID:16160063) RGD PMID:16160063 NCBI chr20:9,709,394...9,733,925
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:11456442) RGD PMID:11456442 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gnpat glyceronephosphate O-acyltransferase acts_upstream_of_or_within ISO MGI:2670461 (PMID:19270340) RGD PMID:19270340 NCBI chr19:69,719,707...69,746,244
Ensembl chr19:52,822,319...52,852,361
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463 (PMID:17166916) RGD PMID:17166916 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:11029008) RGD PMID:11029008 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO MGI:5300464 (PMID:21937600) RGD PMID:21937600 NCBI chr18:70,404,431...70,446,330
Ensembl chr18:70,404,489...70,440,342
JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861918 (PMID:9338785)
Ensembl
RGD
PMID:9338785 GO_REF:0000107 NCBI chr 5:123,621,510...124,742,585
Ensembl chr 5:119,140,533...119,510,552
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:19816510)
Ensembl
RGD
PMID:19816510 GO_REF:0000107 NCBI chr 3:38,453,016...38,457,475
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
cerebellum vasculature morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd4 frizzled class receptor 4 involved_in ISO (PMID:15035989) RGD PMID:15035989 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724
JBrowse link
cochlear nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857134 (PMID:11027399)
Ensembl
RGD
PMID:11027399 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781
JBrowse link
facial nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3720850 (PMID:21533046)
Ensembl
RGD
PMID:21533046 GO_REF:0000107 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504 (PMID:8102800) RGD PMID:8102800 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:1857824 (PMID:8898234) RGD PMID:8898234 NCBI chr10:81,827,915...81,830,404
Ensembl chr10:81,331,507...81,332,836
JBrowse link
formation of radial glial scaffolds term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ARF like GTPase 13B involved_in ISO (PMID:23817546) RGD PMID:23817546 NCBI chr11:13,597,538...13,663,681
Ensembl chr11:150,955...217,197
JBrowse link
G Flna filamin A IMP RGD PMID:22076441 RGD:11564351 NCBI chr  X:157,159,051...157,185,559
Ensembl chr  X:152,007,758...152,031,052
JBrowse link
G Itgb1 integrin subunit beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2156945|MGI:2684610 (PMID:21185282)
Ensembl
RGD
PMID:21185282 GO_REF:0000107 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1298218 (PMID:14715945)
Ensembl
RGD
PMID:14715945 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:96770 (PMID:14715945) RGD PMID:14715945 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
fourth ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445|MGI:3664764 (PMID:11283949), (PMID:16481398) RGD PMID:11283949 PMID:16481398 NCBI chr10:53,891,955...54,024,032
Ensembl chr10:53,394,389...53,525,165
JBrowse link
hindbrain morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO MGI:3529997 (PMID:15710412) RGD PMID:15710412 NCBI chr16:61,954,177...62,374,819
Ensembl chr16:55,291,584...55,671,439
JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO MGI:2150162 (PMID:9398437) RGD PMID:9398437 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:104877 (PMID:11500373)
Ensembl
RGD
PMID:11500373 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO MGI:104853 (PMID:11500373) RGD PMID:11500373 NCBI chr 5:162,793,611...162,799,578
Ensembl chr 5:162,794,367...162,796,261
JBrowse link
hindbrain tangential cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ephb1 Eph receptor B1 IMP RGD PMID:28276447 RGD:127285619 NCBI chr 8:111,386,432...111,823,759
Ensembl chr 8:102,507,549...102,944,839
JBrowse link
G Ephb2 Eph receptor B2 IMP RGD PMID:28276447 RGD:127285619 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Phox2b paired-like homeobox 2b acts_upstream_of_or_within ISO MGI:4418265 (PMID:21068058) RGD PMID:21068058 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,066,264...41,068,978
JBrowse link
hypoglossal nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA
ISO
GO_REF:0000107
MGI:3720850 (PMID:21533046)
Ensembl
RGD
PMID:21533046 GO_REF:0000107 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
locus ceruleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180328|MGI:4438118 (PMID:21068058), (PMID:9115735)
Ensembl
RGD
PMID:9115735 PMID:21068058 GO_REF:0000107 NCBI chr 1:165,590,757...165,595,122
Ensembl chr 1:156,178,754...156,183,118
JBrowse link
medullary reticular formation development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2b paired-like homeobox 2b involved_in ISO (PMID:9374403) RGD PMID:9374403 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,066,264...41,068,978
JBrowse link
metencephalon development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO MGI:3711317 (PMID:17325035) RGD PMID:17325035 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Otx1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97451 (PMID:20816794)
Ensembl
RGD
PMID:20816794 GO_REF:0000107 NCBI chr14:96,082,146...96,089,161
Ensembl chr14:96,082,151...96,089,086
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:97450 (PMID:20816794) RGD PMID:20816794 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO MGI:1857490 (PMID:2205396) RGD PMID:2205396 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
negative regulation of cerebellar granule cell precursor proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cend1 cell cycle exit and neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:4831137 (PMID:20153830) RGD PMID:20153830 NCBI chr 1:196,525,153...196,528,152
Ensembl chr 1:196,523,920...196,528,302
JBrowse link
G Slc6a4 solute carrier family 6 member 4 IMP RGD PMID:18573488 RGD:4889489 NCBI chr10:62,322,688...62,357,060
Ensembl chr10:61,826,123...61,858,384
JBrowse link
neuronal-glial interaction involved in hindbrain glial-mediated radial cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:2438288)
Ensembl
RGD
PMID:2438288 GO_REF:0000107 NCBI chr10:54,817,473...54,823,708
Ensembl chr10:54,318,701...54,324,933
JBrowse link
pons development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII involved_in ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,086,691...38,093,871
Ensembl chr10:37,586,888...37,589,169
JBrowse link
pons maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 acts_upstream_of_or_within ISO MGI:1928270 (PMID:8313466) RGD PMID:8313466 NCBI chr 3:28,501,836...28,528,754
Ensembl chr 3:8,103,680...8,130,603
JBrowse link
positive regulation of cerebellar granule cell precursor proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egf epidermal growth factor acts_upstream_of_or_within ISO (PMID:10027293) RGD PMID:10027293 NCBI chr 2:220,893,660...220,976,331
Ensembl chr 2:218,219,415...218,302,064
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:10027293) RGD PMID:10027293 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Gpr37l1 G protein-coupled receptor 37-like 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:5439169 (PMID:24062445)
GO_REF:0000107
RGD
Ensembl
PMID:24062445 GO_REF:0000107 NCBI chr13:49,150,355...49,157,204
Ensembl chr13:46,598,578...46,605,421
JBrowse link
G Igf1 insulin-like growth factor 1 acts_upstream_of_or_within ISO (PMID:10027293) RGD PMID:10027293 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:10027293)
Ensembl
RGD
PMID:10027293 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
radial glia guided migration of cerebellar granule cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cend1 cell cycle exit and neuronal differentiation 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:4831137 (PMID:20153830)
GO_Central
RGD
PMID:20153830 GO_REF:0000033 NCBI chr 1:196,525,153...196,528,152
Ensembl chr 1:196,523,920...196,528,302
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within ISO (PMID:10624947) RGD PMID:10624947 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966
JBrowse link
radial glia guided migration of Purkinje cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnna2 catenin alpha 2 involved_in ISO (PMID:12089526), (PMID:12123610) RGD PMID:12089526 PMID:12123610 NCBI chr 4:109,294,249...110,443,409
Ensembl chr 4:109,293,978...110,443,522
JBrowse link
G Cul5 cullin 5 acts_upstream_of_or_within ISO (PMID:24210661) RGD PMID:24210661 NCBI chr 8:62,909,150...62,974,641
Ensembl chr 8:54,016,006...54,066,666
JBrowse link
G Dab1 DAB adaptor protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:9338784)
MGI:1337096|MGI:1861918 (PMID:24210661), (PMID:9338785)
Ensembl
RGD
PMID:9338784 PMID:9338785 PMID:24210661 GO_REF:0000107 NCBI chr 5:123,621,510...124,742,585
Ensembl chr 5:119,140,533...119,510,552
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4838182 (PMID:22357600)
Ensembl
RGD
PMID:22357600 GO_REF:0000107 NCBI chr 7:110,691,230...110,934,901
Ensembl chr 7:108,810,628...109,054,691
JBrowse link
G Rere arginine-glutamic acid dipeptide repeats acts_upstream_of_or_within ISO MGI:3577419 (PMID:24466353) RGD PMID:24466353 NCBI chr 5:166,048,770...166,380,559
Ensembl chr 5:160,765,934...161,097,677
JBrowse link
G Rnf7 ring finger protein 7 acts_upstream_of_or_within ISO MGI:108554 (PMID:24210661) RGD PMID:24210661 NCBI chr 8:105,918,395...105,927,643
Ensembl chr 8:97,038,840...97,047,824
JBrowse link
G Socs7 suppressor of cytokine signaling 7 acts_upstream_of_or_within ISO (PMID:24210661) RGD PMID:24210661 NCBI chr10:82,848,525...82,885,201
Ensembl chr10:82,351,680...82,388,830
JBrowse link
regulation of cerebellar granule cell precursor proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Skor2 SKI family transcriptional corepressor 2 acts_upstream_of_or_within ISO MGI:5300464 (PMID:21937600) RGD PMID:21937600 NCBI chr18:70,404,431...70,446,330
Ensembl chr18:70,404,489...70,440,342
JBrowse link
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2b paired-like homeobox 2b involved_in ISO (PMID:19940179) RGD PMID:19940179 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,066,264...41,068,978
JBrowse link
rhombomere 2 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (PMID:16651541) RGD PMID:16651541 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212
JBrowse link
G Hoxa2 homeobox A2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857626 (PMID:7508007)
Ensembl
RGD
PMID:7508007 GO_REF:0000107 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:81,262,768...81,265,044
JBrowse link
rhombomere 3 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO MGI:96170 (PMID:9806922) RGD PMID:9806922 NCBI chr20:21,050,149...21,055,201
Ensembl chr20:21,051,277...21,055,562
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504|MGI:95296 (PMID:9806922) RGD PMID:9806922 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO MGI:96183 (PMID:7508007) RGD PMID:7508007 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:81,262,768...81,265,044
JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:96174 (PMID:10230789) RGD PMID:10230789 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192
JBrowse link
rhombomere 3 formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO MGI:1857507 (PMID:7903221) RGD PMID:7903221 NCBI chr20:21,050,149...21,055,201
Ensembl chr20:21,051,277...21,055,562
JBrowse link
rhombomere 3 morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa2 homeobox A2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857626 (PMID:10230789)
Ensembl
RGD
PMID:10230789 GO_REF:0000107 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:81,262,768...81,265,044
JBrowse link
rhombomere 3 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:8093858)
UniProt
RGD
PMID:8093858 GO_REF:0000024 NCBI chr20:21,050,149...21,055,201
Ensembl chr20:21,051,277...21,055,562
JBrowse link
rhombomere 4 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504|MGI:96182 (PMID:10529420), (PMID:8102800), (PMID:9806922) RGD PMID:8102800 PMID:9806922 PMID:10529420 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:96170 (PMID:10529420) RGD PMID:10529420 NCBI chr10:81,827,915...81,830,404
Ensembl chr10:81,331,507...81,332,836
JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:96174 (PMID:10230789) RGD PMID:10230789 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192
JBrowse link
rhombomere 5 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504|MGI:96182 (PMID:10529420), (PMID:8102800), (PMID:9806922) RGD PMID:8102800 PMID:9806922 PMID:10529420 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:96170 (PMID:10529420) RGD PMID:10529420 NCBI chr10:81,827,915...81,830,404
Ensembl chr10:81,331,507...81,332,836
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:1856419 (PMID:7925021) RGD PMID:7925021 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031
JBrowse link
rhombomere 5 formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO MGI:1857507 (PMID:7903221) RGD PMID:7903221 NCBI chr20:21,050,149...21,055,201
Ensembl chr20:21,051,277...21,055,562
JBrowse link
rhombomere 5 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:11823429), (PMID:8093858)
UniProt
RGD
PMID:8093858 PMID:11823429 GO_REF:0000024 NCBI chr20:21,050,149...21,055,201
Ensembl chr20:21,051,277...21,055,562
JBrowse link
rhombomere 6 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:1856419 (PMID:7925021) RGD PMID:7925021 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031
JBrowse link
rhombomere development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO (PMID:21320481) RGD PMID:21320481 NCBI chr10:81,827,915...81,830,404
Ensembl chr10:81,331,507...81,332,836
JBrowse link
G Hoxb3 homeo box B3 acts_upstream_of_or_within ISO (PMID:21320481) RGD PMID:21320481 NCBI chr10:81,786,001...81,810,655
Ensembl chr10:81,299,357...81,313,107
JBrowse link
rhombomere morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 IMP RGD PMID:21501682 RGD:8552349 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1330828 (PMID:11517264) RGD PMID:11517264 NCBI chr10:65,981,692...65,985,831
Ensembl chr10:65,483,941...65,488,456
JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO MGI:101764 (PMID:11517264) RGD PMID:11517264 NCBI chr 9:83,864,922...83,866,390
Ensembl chr 9:76,416,062...76,418,344
JBrowse link
vestibular nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (PMID:12885554) RGD PMID:12885554 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856210 (PMID:8719615) RGD PMID:8719615 NCBI chr19:40,425,560...40,724,810
Ensembl chr19:23,520,741...23,823,225
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO MGI:1857442 (PMID:11223304) RGD PMID:11223304 NCBI chr11:45,066,875...45,080,024
Ensembl chr11:31,580,742...31,593,901
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    developmental process 7140
      anatomical structure development 6638
        hindbrain development 228
          cell differentiation in hindbrain + 33
          cell migration in hindbrain + 23
          cell proliferation in hindbrain + 15
          fourth ventricle development 2
          hindbrain maturation + 7
          hindbrain morphogenesis + 63
          medulla oblongata development + 5
          metencephalon development + 174
          rhombomere development + 9
Path 2
Term Annotations click to browse term
  biological_process 20553
    developmental process 7140
      anatomical structure development 6638
        multicellular organism development 5350
          system development 4630
            nervous system development 2867
              central nervous system development 1227
                brain development 905
                  hindbrain development 228
                    cell differentiation in hindbrain + 33
                    cell migration in hindbrain + 23
                    cell proliferation in hindbrain + 15
                    fourth ventricle development 2
                    hindbrain maturation + 7
                    hindbrain morphogenesis + 63
                    medulla oblongata development + 5
                    metencephalon development + 174
                    rhombomere development + 9
paths to the root