Rere (arginine-glutamic acid dipeptide repeats) - Rat Genome Database

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Gene: Rere (arginine-glutamic acid dipeptide repeats) Rattus norvegicus
Analyze
Symbol: Rere
Name: arginine-glutamic acid dipeptide repeats
RGD ID: 629475
Description: Predicted to enable transcription coactivator activity and transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin remodeling and nervous system development. Predicted to be located in PML body. Predicted to be part of histone deacetylase complex. Predicted to be active in nucleus. Orthologous to human RERE (arginine-glutamic acid dipeptide repeats); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: arginine-glutamic acid dipeptide (RE) repeats; arginine-glutamic acid dipeptide repeats protein; Arp; atrophin-1 related protein; atrophin-1-related protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25160,765,855 - 161,097,678 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5160,765,934 - 161,097,677 (+)Ensembl
Rnor_6.05167,330,966 - 167,664,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5167,331,035 - 167,664,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,960,573 - 171,292,513 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45167,440,122 - 167,777,271 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15167,450,315 - 167,785,644 (+)NCBI
Celera5159,022,463 - 159,353,516 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:14645126   PMID:15057822   PMID:17150957   PMID:24466353  


Genomics

Comparative Map Data
Rere
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25160,765,855 - 161,097,678 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5160,765,934 - 161,097,677 (+)Ensembl
Rnor_6.05167,330,966 - 167,664,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5167,331,035 - 167,664,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,960,573 - 171,292,513 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45167,440,122 - 167,777,271 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15167,450,315 - 167,785,644 (+)NCBI
Celera5159,022,463 - 159,353,516 (+)NCBICelera
Cytogenetic Map5q36NCBI
RERE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3818,352,404 - 8,817,640 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl18,352,397 - 8,848,921 (-)EnsemblGRCh38hg38GRCh38
GRCh3718,412,464 - 8,877,699 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3618,335,051 - 8,800,286 (-)NCBINCBI36hg18NCBI36
Build 3418,346,722 - 8,811,790NCBI
Celera17,520,570 - 7,986,441 (-)NCBI
Cytogenetic Map1p36.23NCBI
HuRef17,561,179 - 8,026,761 (-)NCBIHuRef
CHM1_118,401,786 - 8,867,545 (-)NCBICHM1_1
T2T-CHM13v2.017,885,246 - 8,351,098 (-)NCBI
Rere
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394150,365,372 - 150,706,423 (+)NCBIGRCm39mm39
GRCm39 Ensembl4150,366,103 - 150,706,423 (+)Ensembl
GRCm384150,281,511 - 150,621,966 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4150,281,646 - 150,621,966 (+)EnsemblGRCm38mm10GRCm38
MGSCv374149,656,025 - 149,996,075 (+)NCBIGRCm37mm9NCBIm37
MGSCv364149,250,140 - 149,465,771 (+)NCBImm8
Celera4152,556,963 - 152,899,017 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map481.34NCBI
Rere
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554864,443,723 - 4,695,800 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554864,303,573 - 4,695,800 (+)NCBIChiLan1.0ChiLan1.0
RERE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.118,348,687 - 8,747,495 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl18,351,367 - 8,648,973 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v017,111,594 - 7,576,667 (-)NCBIMhudiblu_PPA_v0panPan3
RERE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1561,868,288 - 62,249,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl561,868,685 - 62,215,973 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha561,877,331 - 62,286,365 (-)NCBI
ROS_Cfam_1.0562,085,105 - 62,495,227 (-)NCBI
ROS_Cfam_1.0 Ensembl562,087,296 - 62,495,288 (-)Ensembl
UMICH_Zoey_3.1562,084,029 - 62,493,986 (-)NCBI
UNSW_CanFamBas_1.0561,948,407 - 62,357,291 (-)NCBI
UU_Cfam_GSD_1.0562,352,661 - 62,762,441 (-)NCBI
Rere
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505832,193,393 - 32,496,551 (-)NCBI
SpeTri2.0NW_0049366232,678,627 - 2,942,387 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RERE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1668,954,766 - 69,258,855 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2663,443,116 - 63,522,403 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RERE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120122,946,759 - 123,408,428 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20123,109,364 - 123,408,631 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605426,963,344 - 27,436,567 (+)NCBIVero_WHO_p1.0
Rere
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248183,388,149 - 3,648,634 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248183,255,835 - 3,648,634 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
SHGC-74183  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25161,095,599 - 161,095,773 (+)MAPPERmRatBN7.2
Rnor_6.05167,662,428 - 167,662,601NCBIRnor6.0
Rnor_5.05171,290,435 - 171,290,608UniSTSRnor5.0
RGSC_v3.45167,775,193 - 167,775,366UniSTSRGSC3.4
Celera5159,351,438 - 159,351,611UniSTS
Cytogenetic Map5q36UniSTS
BI276205  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25161,095,586 - 161,095,767 (+)MAPPERmRatBN7.2
Rnor_6.05167,662,415 - 167,662,595NCBIRnor6.0
Rnor_5.05171,290,422 - 171,290,602UniSTSRnor5.0
RGSC_v3.45167,775,180 - 167,775,360UniSTSRGSC3.4
Celera5159,351,425 - 159,351,605UniSTS
RH 3.4 Map51122.6UniSTS
Cytogenetic Map5q36UniSTS
RH127536  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25161,097,307 - 161,097,511 (+)MAPPERmRatBN7.2
Rnor_6.05167,664,136 - 167,664,339NCBIRnor6.0
Rnor_5.05171,292,143 - 171,292,346UniSTSRnor5.0
RGSC_v3.45167,776,901 - 167,777,104UniSTSRGSC3.4
Celera5159,353,146 - 159,353,349UniSTS
Cytogenetic Map5q36UniSTS
RH143046  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25160,791,029 - 160,791,236 (+)MAPPERmRatBN7.2
Rnor_6.05167,356,697 - 167,356,903NCBIRnor6.0
Rnor_5.05170,986,235 - 170,986,441UniSTSRnor5.0
RGSC_v3.45167,465,162 - 167,465,368UniSTSRGSC3.4
Celera5159,047,517 - 159,047,723UniSTS
RH 3.4 Map51122.1UniSTS
Cytogenetic Map5q36UniSTS
AI548909  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25161,097,434 - 161,097,524 (+)MAPPERmRatBN7.2
Rnor_6.05167,664,263 - 167,664,352NCBIRnor6.0
Rnor_5.05171,292,270 - 171,292,359UniSTSRnor5.0
RGSC_v3.45167,777,028 - 167,777,117UniSTSRGSC3.4
Celera5159,353,273 - 159,353,362UniSTS
RH 3.4 Map51121.7UniSTS
Cytogenetic Map5q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:362
Count of miRNA genes:202
Interacting mature miRNAs:265
Transcripts:ENSRNOT00000024443
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 28 12 19 12 4 7 74 35 41 11 4
Low 9 29 29 29 4 4 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006239441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI113241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW920332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA511326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB328253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB728130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK470955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U44091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000024443   ⟹   ENSRNOP00000024443
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,765,934 - 161,097,677 (+)Ensembl
Rnor_6.0 Ensembl5167,331,035 - 167,664,505 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095232   ⟹   ENSRNOP00000085727
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,765,934 - 161,097,677 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103362   ⟹   ENSRNOP00000089254
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5160,969,273 - 161,097,677 (+)Ensembl
RefSeq Acc Id: NM_053885   ⟹   NP_446337
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25160,765,934 - 161,097,678 (+)NCBI
Rnor_6.05167,331,035 - 167,664,506 (+)NCBI
Rnor_5.05170,960,573 - 171,292,513 (+)NCBI
RGSC_v3.45167,440,122 - 167,777,271 (+)RGD
Celera5159,022,463 - 159,353,516 (+)RGD
Sequence:
RefSeq Acc Id: XM_006239438   ⟹   XP_006239500
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25160,765,857 - 161,097,678 (+)NCBI
Rnor_6.05167,330,966 - 167,664,506 (+)NCBI
Rnor_5.05170,960,573 - 171,292,513 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006239441   ⟹   XP_006239503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25160,966,551 - 161,097,678 (+)NCBI
Rnor_6.05167,533,306 - 167,664,506 (+)NCBI
Rnor_5.05170,960,573 - 171,292,513 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764198   ⟹   XP_008762420
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25160,765,855 - 161,097,678 (+)NCBI
Rnor_6.05167,330,966 - 167,664,506 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764199   ⟹   XP_008762421
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25160,853,228 - 161,097,678 (+)NCBI
Rnor_6.05167,419,646 - 167,664,506 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764200   ⟹   XP_008762422
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25160,765,858 - 161,097,678 (+)NCBI
Rnor_6.05167,330,967 - 167,664,506 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764201   ⟹   XP_008762423
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25160,765,855 - 161,097,678 (+)NCBI
Rnor_6.05167,330,966 - 167,664,506 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039109152   ⟹   XP_038965080
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,047,809 - 161,097,678 (+)NCBI
RefSeq Acc Id: XM_039109153   ⟹   XP_038965081
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.25161,047,483 - 161,097,678 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_446337   ⟸   NM_053885
- UniProtKB: Q62901 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006239500   ⟸   XM_006239438
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006239503   ⟸   XM_006239441
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008762423   ⟸   XM_008764201
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008762420   ⟸   XM_008764198
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008762422   ⟸   XM_008764200
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008762421   ⟸   XM_008764199
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000024443   ⟸   ENSRNOT00000024443
RefSeq Acc Id: XP_038965081   ⟸   XM_039109153
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038965080   ⟸   XM_039109152
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000089254   ⟸   ENSRNOT00000103362
RefSeq Acc Id: ENSRNOP00000085727   ⟸   ENSRNOT00000095232
Protein Domains
BAH   ELM2   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62901-F1-model_v2 AlphaFold Q62901 1-1559 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694281
Promoter ID:EPDNEW_R4806
Type:initiation region
Name:Rere_1
Description:arginine-glutamic acid dipeptide repeats
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4807  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05167,331,023 - 167,331,083EPDNEW
RGD ID:13694282
Promoter ID:EPDNEW_R4807
Type:single initiation site
Name:Rere_2
Description:arginine-glutamic acid dipeptide repeats
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4806  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05167,331,190 - 167,331,250EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:629475 AgrOrtholog
BioCyc Gene G2FUF-39072 BioCyc
Ensembl Genes ENSRNOG00000017940 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000024443 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000085727 ENTREZGENE
  ENSRNOP00000089254 ENTREZGENE
Ensembl Transcript ENSRNOT00000024443 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000095232 ENTREZGENE
  ENSRNOT00000103362 ENTREZGENE
Gene3D-CATH 2.30.30.490 UniProtKB/Swiss-Prot
InterPro Atrophin-like UniProtKB/Swiss-Prot
  BAH_dom UniProtKB/Swiss-Prot
  BAH_sf UniProtKB/Swiss-Prot
  ELM2_dom UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/Swiss-Prot
  SANT/Myb UniProtKB/Swiss-Prot
  SANT_dom UniProtKB/Swiss-Prot
  Znf_GATA UniProtKB/Swiss-Prot
KEGG Report rno:116665 UniProtKB/Swiss-Prot
NCBI Gene 116665 ENTREZGENE
Pfam Atrophin-1 UniProtKB/Swiss-Prot
  BAH UniProtKB/Swiss-Prot
  ELM2 UniProtKB/Swiss-Prot
  GATA UniProtKB/Swiss-Prot
PhenoGen Rere PhenoGen
PROSITE BAH UniProtKB/Swiss-Prot
  ELM2 UniProtKB/Swiss-Prot
  SANT UniProtKB/Swiss-Prot
SMART BAH UniProtKB/Swiss-Prot
  ELM2 UniProtKB/Swiss-Prot
  SANT UniProtKB/Swiss-Prot
  ZnF_GATA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
UniProt Q62901 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-13 Rere  arginine-glutamic acid dipeptide repeats  Rere  arginine-glutamic acid dipeptide (RE) repeats  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Rere  arginine-glutamic acid dipeptide (RE) repeats      Symbol and Name status set to approved 1299863 APPROVED
2003-04-06 Rere  arginine-glutamic acid dipeptide (RE) repeats      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contain two regions of alternating acidic and basic amino residues similar to those found in atrophin-1  
gene_domains does not contain a glutamine repeat found in atrophin-1 631911
gene_product member of the atrophin-1 gene family