Pdss2 (decaprenyl diphosphate synthase subunit 2) - Rat Genome Database

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Gene: Pdss2 (decaprenyl diphosphate synthase subunit 2) Rattus norvegicus
Analyze
Symbol: Pdss2
Name: decaprenyl diphosphate synthase subunit 2
RGD ID: 1359372
Description: Predicted to enable prenyltransferase activity and protein heterodimerization activity. Predicted to contribute to all-trans-decaprenyl-diphosphate synthase activity and all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity. Predicted to be involved in cerebellum development; isoprenoid biosynthetic process; and ubiquinone biosynthetic process. Predicted to act upstream of or within regulation of body fluid levels. Predicted to be located in cytosol. Predicted to be part of heterotetrameric polyprenyl diphosphate synthase complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 3. Orthologous to human PDSS2 (decaprenyl diphosphate synthase subunit 2); PARTICIPATES IN terpenoid biosynthetic pathway; INTERACTS WITH acetamide; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: all trans-polyprenyl-diphosphate synthase PDSS2; all-trans-decaprenyl-diphosphate synthase subunit 2; decaprenyl pyrophosphate synthase subunit 2; decaprenyl pyrophosphate synthetase subunit 2; decaprenyl-diphosphate synthase subunit 2; LOC365592; prenyl (decaprenyl) diphosphate synthase, subunit 2; prenyl (solanesyl) diphosphate synthase, subunit 2; similar to CG10585-PA; solanesyl-diphosphate synthase subunit 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,291,788 - 48,520,846 (+)NCBIGRCr8
mRatBN7.22046,709,631 - 46,938,704 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,709,649 - 46,938,708 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2048,427,244 - 48,652,775 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,077,260 - 48,302,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02048,762,116 - 48,986,591 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02047,966,513 - 48,192,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,966,583 - 48,192,743 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,627,299 - 49,699,472 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02049,750,928 - 49,851,503 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,128,350 - 47,359,830 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12047,157,046 - 47,388,523 (+)NCBI
Celera2053,049,724 - 53,270,077 (-)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pdss2RatCharcot-Marie-Tooth disease type 4  ISOPDSS2 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 4ClinVarPMID:23623387 and PMID:28492532
Pdss2Ratcoenzyme Q10 deficiency disease  ISOPDSS2 (Homo sapiens)8554872ClinVar Annotator: match by term: Coenzyme Q10 deficiency and primaryClinVar 
Pdss2Ratfocal segmental glomerulosclerosis  ISOPDSS2 (Homo sapiens)8554872ClinVar Annotator: match by term: Focal segmental glomerulosclerosisClinVarPMID:25741868 and PMID:28492532
Pdss2Ratgenetic disease  ISOPDSS2 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Pdss2Ratkidney disease  ISOPDSS2 (Homo sapiens)8554872ClinVar Annotator: match by term: renal diseaseClinVarPMID:25741868 and PMID:28492532
Pdss2Ratnephrotic syndrome  ISOPDSS2 (Homo sapiens)8554872ClinVar Annotator: match by term: Nephrotic syndromeClinVarPMID:17186472 more ...
Pdss2Ratprimary coenzyme Q10 deficiency 3  ISOPDSS2 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17186472 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pdss2Ratcoenzyme Q10 deficiency disease  ISSPdss2 (Mus musculus)13592920OMIM:607426 more ...MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pdss2Ratprimary coenzyme Q10 deficiency 3  ISOPDSS2 (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pdss2Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of PDSS2 mRNACTDPMID:31881176
Pdss2Rataflatoxin B1 affects expressionISOPDSS2 (Homo sapiens)6480464Aflatoxin B1 affects the expression of PDSS2 proteinCTDPMID:20106945
Pdss2Rataflatoxin B1 decreases expressionISOPDSS2 (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of PDSS2 mRNACTDPMID:22100608 and PMID:27153756
Pdss2Ratamiodarone increases expressionISOPdss2 (Mus musculus)6480464Amiodarone results in increased expression of PDSS2 mRNACTDPMID:24489787
Pdss2Ratantirheumatic drug increases expressionISOPDSS2 (Homo sapiens)6480464Antirheumatic Agents results in increased expression of PDSS2 mRNACTDPMID:24449571
Pdss2Ratarachidonic acid decreases expressionISOPDSS2 (Homo sapiens)6480464Arachidonic Acid results in decreased expression of PDSS2 mRNACTDPMID:16704987
Pdss2Rataristolochic acid A decreases expressionISOPDSS2 (Homo sapiens)6480464aristolochic acid I results in decreased expression of PDSS2 mRNACTDPMID:33212167
Pdss2Ratarsenite(3-) multiple interactionsISOPDSS2 (Homo sapiens)6480464arsenite promotes the reaction [G3BP1 protein binds to PDSS2 mRNA]CTDPMID:32406909
Pdss2Ratatrazine decreases expressionISOPDSS2 (Homo sapiens)6480464Atrazine results in decreased expression of PDSS2 mRNACTDPMID:22378314
Pdss2Ratatrazine affects methylationEXP 6480464Atrazine affects the methylation of PDSS2 geneCTDPMID:35440735
Pdss2Ratbenzo[a]pyrene decreases expressionISOPdss2 (Mus musculus)6480464Benzo(a)pyrene results in decreased expression of PDSS2 mRNACTDPMID:21715664
Pdss2Ratbenzo[a]pyrene increases methylationISOPDSS2 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of PDSS2 promoterCTDPMID:27901495
Pdss2Ratbenzo[a]pyrene decreases expressionISOPDSS2 (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of PDSS2 mRNACTDPMID:20064835 more ...
Pdss2Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of PDSS2 mRNACTDPMID:25181051
Pdss2Ratbisphenol A multiple interactionsISOPDSS2 (Homo sapiens)6480464[bisphenol A co-treated with Fulvestrant] results in increased methylation of PDSS2 geneCTDPMID:31601247
Pdss2Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of PDSS2 mRNACTDPMID:30816183 more ...
Pdss2Ratbisphenol F increases expressionISOPdss2 (Mus musculus)6480464bisphenol F results in increased expression of PDSS2 mRNACTDPMID:38685157
Pdss2Ratcadmium dichloride decreases expressionISOPDSS2 (Homo sapiens)6480464Cadmium Chloride results in decreased expression of PDSS2 mRNACTDPMID:38568856
Pdss2Ratcarbonyl cyanide p-trifluoromethoxyphenylhydrazone increases expressionISOPDSS2 (Homo sapiens)6480464Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone results in increased expression of PDSS2 mRNACTDPMID:21308897
Pdss2RatCGP 52608 multiple interactionsISOPDSS2 (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to PDSS2 gene]CTDPMID:28238834

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Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pdss2Ratcerebellum development involved_inISSUniProtKB:Q33DR31600115GO_REF:0000024UniProtGO_REF:0000024
Pdss2Ratcerebellum development involved_inISOPdss2 (Mus musculus)1624291 PMID:21871565RGDPMID:21871565
Pdss2Ratisoprenoid biosynthetic process involved_inIBAFB:FBgn0051005 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pdss2Ratisoprenoid biosynthetic process involved_inIEAUniProtKB-KW:KW-04141600115GO_REF:0000043UniProtGO_REF:0000043
Pdss2Ratisoprenoid biosynthetic process involved_inISOPdss2 (Mus musculus)1624291 PMID:16262699RGDPMID:16262699
Pdss2Ratisoprenoid biosynthetic process involved_inIEAInterPro:IPR0000921600115GO_REF:0000002InterProGO_REF:0000002
Pdss2Ratisoprenoid biosynthetic process involved_inISOPDSS2 (Homo sapiens)1624291 PMID:16262699RGDPMID:16262699
Pdss2Ratlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
Pdss2Ratregulation of body fluid levels acts_upstream_of_or_withinISOPdss2 (Mus musculus)1624291MGI:1856927 PMID:5098070RGDPMID:5098070
Pdss2Ratubiquinone biosynthetic process involved_inIEAUniPathway:UPA002321600115GO_REF:0000041UniProtGO_REF:0000041
Pdss2Ratubiquinone biosynthetic process involved_inIEAUniProtKB-KW:KW-08311600115GO_REF:0000043UniProtGO_REF:0000043
Pdss2Ratubiquinone biosynthetic process involved_inIBAMGI:1889278 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Pdss2Ratubiquinone biosynthetic process involved_inISOPdss2 (Mus musculus)1624291 PMID:16262699RGDPMID:16262699
Pdss2Ratubiquinone biosynthetic process involved_inISOPDSS2 (Homo sapiens)1624291 PMID:16262699RGDPMID:16262699
1 to 14 of 14 rows

Cellular Component
1 to 9 of 9 rows

  
1 to 9 of 9 rows

Molecular Function
1 to 11 of 11 rows

  
1 to 11 of 11 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Pdss2Ratterpenoid biosynthetic pathway  IEA 6907045 KEGGrno:00900

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:5098070   PMID:15489334   PMID:16262699   PMID:18614015   PMID:34800366  



Pdss2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,291,788 - 48,520,846 (+)NCBIGRCr8
mRatBN7.22046,709,631 - 46,938,704 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,709,649 - 46,938,708 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2048,427,244 - 48,652,775 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,077,260 - 48,302,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02048,762,116 - 48,986,591 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02047,966,513 - 48,192,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,966,583 - 48,192,743 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,627,299 - 49,699,472 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02049,750,928 - 49,851,503 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,128,350 - 47,359,830 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12047,157,046 - 47,388,523 (+)NCBI
Celera2053,049,724 - 53,270,077 (-)NCBICelera
Cytogenetic Map20q13NCBI
PDSS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386107,152,562 - 107,459,564 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6107,152,562 - 107,459,564 (-)EnsemblGRCh38hg38GRCh38
GRCh376107,473,766 - 107,780,768 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366107,580,456 - 107,887,448 (-)NCBINCBI36Build 36hg18NCBI36
Build 346107,580,455 - 107,887,448NCBI
Celera6108,222,204 - 108,529,221 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6105,044,813 - 105,351,570 (-)NCBIHuRef
CHM1_16107,736,502 - 108,043,494 (-)NCBICHM1_1
T2T-CHM13v2.06108,331,503 - 108,638,499 (-)NCBIT2T-CHM13v2.0
Pdss2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,095,396 - 43,340,878 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1043,097,482 - 43,340,878 (+)EnsemblGRCm39 Ensembl
GRCm381043,218,248 - 43,464,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,221,486 - 43,464,882 (+)EnsemblGRCm38mm10GRCm38
MGSCv371042,941,292 - 43,184,688 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361042,909,901 - 43,153,297 (+)NCBIMGSCv36mm8
Celera1044,087,907 - 44,331,621 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.91NCBI
Pdss2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,422,513 - 32,714,062 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,426,604 - 32,714,337 (-)NCBIChiLan1.0ChiLan1.0
PDSS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25127,169,566 - 127,480,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16125,059,474 - 125,370,427 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06104,963,942 - 105,272,807 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16108,831,154 - 109,137,354 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,833,223 - 109,137,055 (-)Ensemblpanpan1.1panPan2
PDSS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,371,548 - 64,620,652 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1264,338,950 - 64,620,367 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,157,690 - 64,407,542 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01265,214,682 - 65,465,310 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1265,182,538 - 65,465,358 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11264,574,421 - 64,823,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01264,417,912 - 64,668,719 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01264,692,925 - 64,942,617 (-)NCBIUU_Cfam_GSD_1.0
Pdss2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494699,254,277 - 99,538,434 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365643,583,396 - 3,813,155 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365643,529,140 - 3,813,449 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDSS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl173,235,100 - 73,510,535 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1173,234,950 - 73,510,533 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,739,757 - 82,746,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDSS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,405,014 - 66,704,559 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1366,405,521 - 66,704,696 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604038,729,663 - 39,030,971 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdss2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478014,804,030 - 15,129,497 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478014,803,750 - 15,130,156 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Pdss2
1839 total Variants

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:58
Interacting mature miRNAs:69
Transcripts:ENSRNOT00000067169
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat

1 to 10 of 11 rows
RH131620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22046,938,437 - 46,938,625 (+)MAPPERmRatBN7.2
Rnor_6.02048,192,481 - 48,192,668NCBIRnor6.0
Rnor_5.02049,851,237 - 49,851,424UniSTSRnor5.0
RGSC_v3.42047,359,564 - 47,359,751UniSTSRGSC3.4
Celera2053,049,803 - 53,049,990UniSTS
RH 3.4 Map334.8UniSTS
Cytogenetic Map20q13UniSTS
RH138146  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22046,723,034 - 46,723,235 (+)MAPPERmRatBN7.2
Rnor_6.02047,979,915 - 47,980,115NCBIRnor6.0
Rnor_5.02049,640,631 - 49,640,831UniSTSRnor5.0
RGSC_v3.42047,141,675 - 47,141,875UniSTSRGSC3.4
Celera2053,256,552 - 53,256,752UniSTS
RH 3.4 Map20493.24UniSTS
Cytogenetic Map20q13UniSTS
BE117161  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22046,713,479 - 46,713,681 (+)MAPPERmRatBN7.2
Rnor_6.02047,970,363 - 47,970,564NCBIRnor6.0
Rnor_5.02049,631,079 - 49,631,280UniSTSRnor5.0
RGSC_v3.42047,132,123 - 47,132,324UniSTSRGSC3.4
Celera2053,266,103 - 53,266,304UniSTS
RH 3.4 Map20494.35UniSTS
Cytogenetic Map20q13UniSTS
RH69187  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2053,129,355 - 53,130,333UniSTS
Cytogenetic Map20q13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000067169   ⟹   ENSRNOP00000059060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2046,709,649 - 46,938,708 (+)Ensembl
Rnor_6.0 Ensembl2047,966,583 - 48,192,743 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107145   ⟹   ENSRNOP00000083573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2046,709,649 - 46,914,048 (+)Ensembl
RefSeq Acc Id: NM_001014249   ⟹   NP_001014271
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,291,863 - 48,520,846 (+)NCBI
mRatBN7.22046,709,706 - 46,938,704 (+)NCBI
Rnor_6.02047,966,583 - 48,192,747 (+)NCBI
Rnor_5.02049,627,299 - 49,699,472 (+)NCBI
Rnor_5.02049,750,928 - 49,851,503 (+)NCBI
RGSC_v3.42047,128,350 - 47,359,830 (+)RGD
Celera2053,049,724 - 53,270,077 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098909   ⟹   XP_038954837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,291,795 - 48,518,243 (+)NCBI
mRatBN7.22046,709,639 - 46,937,578 (+)NCBI
RefSeq Acc Id: XM_063279331   ⟹   XP_063135401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,291,791 - 48,518,067 (+)NCBI
RefSeq Acc Id: XM_063279332   ⟹   XP_063135402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,291,792 - 48,498,160 (+)NCBI
RefSeq Acc Id: XM_063279333   ⟹   XP_063135403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,291,788 - 48,518,070 (+)NCBI
1 to 11 of 11 rows
Protein RefSeqs NP_001014271 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954837 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135401 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135402 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135403 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85898 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059060
  ENSRNOP00000059060.2
  ENSRNOP00000083573
  ENSRNOP00000101879
GenBank Protein Q5U2R1 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_001014271   ⟸   NM_001014249
- UniProtKB: Q5U2R1 (UniProtKB/Swiss-Prot),   A6K6X3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059060   ⟸   ENSRNOT00000067169
RefSeq Acc Id: XP_038954837   ⟸   XM_039098909
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZZL8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083573   ⟸   ENSRNOT00000107145
RefSeq Acc Id: XP_063135403   ⟸   XM_063279333
- Peptide Label: isoform X3

Name Modeler Protein Id AA Range Protein Structure
AF-Q5U2R1-F1-model_v2 AlphaFold Q5U2R1 1-401 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701673
Promoter ID:EPDNEW_R12197
Type:initiation region
Name:Pdss2_1
Description:decaprenyl diphosphate synthase subunit 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02047,966,534 - 47,966,594EPDNEW


1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-3348 BioCyc
Ensembl Genes ENSRNOG00000042962 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000067169 ENTREZGENE
  ENSRNOT00000067169.3 UniProtKB/Swiss-Prot
  ENSRNOT00000107145 ENTREZGENE
  ENSRNOT00000125566 ENTREZGENE
Gene3D-CATH 1.10.600.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7193369 IMAGE-MGC_LOAD
InterPro Isoprenoid_synthase_dom_sf UniProtKB/Swiss-Prot
  Polyprenyl_synt UniProtKB/Swiss-Prot
KEGG Report rno:365592 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94721 IMAGE-MGC_LOAD
NCBI Gene 365592 ENTREZGENE
PANTHER ALL TRANS-POLYPRENYL-DIPHOSPHATE SYNTHASE PDSS2 UniProtKB/Swiss-Prot
  GERANYLGERANYL PYROPHOSPHATE SYNTHASE UniProtKB/Swiss-Prot
Pfam polyprenyl_synt UniProtKB/Swiss-Prot
PhenoGen Pdss2 PhenoGen
RatGTEx ENSRNOG00000042962 RatGTEx
Superfamily-SCOP SSF48576 UniProtKB/Swiss-Prot
UniProt A0A8I5ZZL8 ENTREZGENE, UniProtKB/TrEMBL
  A6K6X3 ENTREZGENE, UniProtKB/TrEMBL
  DLP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-03 Pdss2  decaprenyl diphosphate synthase subunit 2  Pdss2  prenyl (decaprenyl) diphosphate synthase, subunit 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-06 Pdss2  prenyl (decaprenyl) diphosphate synthase, subunit 2  Pdss2  prenyl (solanesyl) diphosphate synthase, subunit 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Pdss2  prenyl (solanesyl) diphosphate synthase, subunit 2  LOC365592  similar to CG10585-PA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED