Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pdss2 | Rat | coenzyme Q10 deficiency disease | | ISS | Pdss2 (Mus musculus) | 13592920 | OMIM:607426 more ... | MouseDO | | |
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Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pdss2 | Rat | coenzyme Q10 deficiency disease | | ISS | Pdss2 (Mus musculus) | 13592920 | OMIM:607426 more ... | MouseDO | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
3. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
4. | GOA pipeline | RGD automated data pipeline |
5. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
7. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
PMID:5098070 | PMID:15489334 | PMID:16262699 | PMID:18614015 | PMID:34800366 |
Pdss2 (Rattus norvegicus - Norway rat) |
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PDSS2 (Homo sapiens - human) |
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Pdss2 (Mus musculus - house mouse) |
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Pdss2 (Chinchilla lanigera - long-tailed chinchilla) |
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PDSS2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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PDSS2 (Canis lupus familiaris - dog) |
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Pdss2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PDSS2 (Sus scrofa - pig) |
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PDSS2 (Chlorocebus sabaeus - green monkey) |
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Pdss2 (Heterocephalus glaber - naked mole-rat) |
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Variants in Pdss2
1839 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH131620 |
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RH138146 |
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BE117161 |
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RH69187 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001014249 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008773004 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039098909 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279331 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279332 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279333 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC085898 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
FQ226070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ227135 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ227631 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ233036 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ234130 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000067169 ⟹ ENSRNOP00000059060 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000107145 ⟹ ENSRNOP00000083573 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001014249 ⟹ NP_001014271 | ||||||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039098909 ⟹ XP_038954837 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063279331 ⟹ XP_063135401 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063279332 ⟹ XP_063135402 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063279333 ⟹ XP_063135403 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001014271 | (Get FASTA) | NCBI Sequence Viewer |
XP_038954837 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135401 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135402 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135403 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH85898 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000059060.2 | ||
ENSRNOP00000083573.1 | |||
ENSRNOP00055000912 | |||
ENSRNOP00060008308 | |||
ENSRNOP00065009844 | |||
GenBank Protein | Q5U2R1 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001014271 ⟸ NM_001014249 |
- UniProtKB: | Q5U2R1 (UniProtKB/Swiss-Prot), A6K6X3 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000059060 ⟸ ENSRNOT00000067169 |
RefSeq Acc Id: | XP_038954837 ⟸ XM_039098909 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A0A8I5ZZL8 (UniProtKB/TrEMBL) |
Ensembl Acc Id: | ENSRNOP00000083573 ⟸ ENSRNOT00000107145 |
RefSeq Acc Id: | XP_063135403 ⟸ XM_063279333 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_063135401 ⟸ XM_063279331 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_063135402 ⟸ XM_063279332 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5U2R1-F1-model_v2 | AlphaFold | Q5U2R1 | 1-401 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701673 | ||||||||
Promoter ID: | EPDNEW_R12197 | ||||||||
Type: | initiation region | ||||||||
Name: | Pdss2_1 | ||||||||
Description: | decaprenyl diphosphate synthase subunit 2 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1359372 | AgrOrtholog |
BioCyc Gene | G2FUF-3348 | BioCyc |
Ensembl Genes | ENSRNOG00000042962 | Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ENSRNOG00055000678 | UniProtKB/Swiss-Prot | |
ENSRNOG00060006783 | UniProtKB/Swiss-Prot | |
ENSRNOG00065008387 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000067169.3 | UniProtKB/Swiss-Prot |
ENSRNOT00000107145.1 | UniProtKB/TrEMBL | |
ENSRNOT00055001157 | UniProtKB/Swiss-Prot | |
ENSRNOT00060011121 | UniProtKB/Swiss-Prot | |
ENSRNOT00065013302 | UniProtKB/Swiss-Prot | |
Gene3D-CATH | 1.10.600.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7193369 | IMAGE-MGC_LOAD |
InterPro | Isoprenoid_synthase_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Polyprenyl_synt | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:365592 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:94721 | IMAGE-MGC_LOAD |
NCBI Gene | 365592 | ENTREZGENE |
PANTHER | ALL TRANS-POLYPRENYL-DIPHOSPHATE SYNTHASE PDSS2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GERANYLGERANYL PYROPHOSPHATE SYNTHASE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | polyprenyl_synt | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Pdss2 | PhenoGen |
RatGTEx | ENSRNOG00000042962 | RatGTEx |
ENSRNOG00055000678 | RatGTEx | |
ENSRNOG00060006783 | RatGTEx | |
ENSRNOG00065008387 | RatGTEx | |
Superfamily-SCOP | SSF48576 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A8I5ZZL8 | ENTREZGENE, UniProtKB/TrEMBL |
A6K6X3 | ENTREZGENE, UniProtKB/TrEMBL | |
DLP1_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2017-01-03 | Pdss2 | decaprenyl diphosphate synthase subunit 2 | Pdss2 | prenyl (decaprenyl) diphosphate synthase, subunit 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-11-06 | Pdss2 | prenyl (decaprenyl) diphosphate synthase, subunit 2 | Pdss2 | prenyl (solanesyl) diphosphate synthase, subunit 2 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-05 | Pdss2 | prenyl (solanesyl) diphosphate synthase, subunit 2 | LOC365592 | similar to CG10585-PA | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |