PDSS2 (decaprenyl diphosphate synthase subunit 2) - Rat Genome Database

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Gene: PDSS2 (decaprenyl diphosphate synthase subunit 2) Pan paniscus
Analyze
Symbol: PDSS2
Name: decaprenyl diphosphate synthase subunit 2
RGD ID: 11989773
Description: ENCODES a protein that exhibits all-trans-decaprenyl-diphosphate synthase activity (ortholog); all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity (ortholog); INVOLVED IN regulation of body fluid levels (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); coenzyme Q10 deficiency disease (ortholog); focal segmental glomerulosclerosis (ortholog); FOUND IN cytosol (inferred); heterotetrameric polyprenyl diphosphate synthase complex (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: all trans-polyprenyl-diphosphate synthase PDSS2; decaprenyl-diphosphate synthase subunit 2; prenyl (decaprenyl) diphosphate synthase, subunit 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25127,169,566 - 127,480,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16125,059,474 - 125,370,427 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06104,963,942 - 105,272,807 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16108,831,154 - 109,137,354 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,833,223 - 109,137,055 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PDSS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25127,169,566 - 127,480,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16125,059,474 - 125,370,427 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06104,963,942 - 105,272,807 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16108,831,154 - 109,137,354 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,833,223 - 109,137,055 (-)Ensemblpanpan1.1panPan2
PDSS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386107,152,562 - 107,459,564 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6107,152,562 - 107,459,564 (-)EnsemblGRCh38hg38GRCh38
GRCh376107,473,766 - 107,780,768 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366107,580,456 - 107,887,448 (-)NCBINCBI36Build 36hg18NCBI36
Build 346107,580,455 - 107,887,448NCBI
Celera6108,222,204 - 108,529,221 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6105,044,813 - 105,351,570 (-)NCBIHuRef
CHM1_16107,736,502 - 108,043,494 (-)NCBICHM1_1
T2T-CHM13v2.06108,331,503 - 108,638,499 (-)NCBIT2T-CHM13v2.0
Pdss2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,095,396 - 43,340,878 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1043,097,482 - 43,340,878 (+)EnsemblGRCm39 Ensembl
GRCm381043,218,248 - 43,464,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,221,486 - 43,464,882 (+)EnsemblGRCm38mm10GRCm38
MGSCv371042,941,292 - 43,184,688 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361042,909,901 - 43,153,297 (+)NCBIMGSCv36mm8
Celera1044,087,907 - 44,331,621 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.91NCBI
Pdss2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,291,788 - 48,520,846 (+)NCBIGRCr8
mRatBN7.22046,709,631 - 46,938,704 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,709,649 - 46,938,708 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2048,427,244 - 48,652,775 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,077,260 - 48,302,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02048,762,116 - 48,986,591 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02047,966,513 - 48,192,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,966,583 - 48,192,743 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,627,299 - 49,699,472 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02049,750,928 - 49,851,503 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,128,350 - 47,359,830 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12047,157,046 - 47,388,523 (+)NCBI
Celera2053,049,724 - 53,270,077 (-)NCBICelera
Cytogenetic Map20q13NCBI
Pdss2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,422,513 - 32,714,062 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,426,604 - 32,714,337 (-)NCBIChiLan1.0ChiLan1.0
PDSS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,371,548 - 64,620,652 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1264,338,950 - 64,620,367 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,157,690 - 64,407,542 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01265,214,682 - 65,465,310 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1265,182,538 - 65,465,358 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11264,574,421 - 64,823,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01264,417,912 - 64,668,719 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01264,692,925 - 64,942,617 (-)NCBIUU_Cfam_GSD_1.0
Pdss2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494699,254,277 - 99,538,434 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365643,583,396 - 3,813,155 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365643,529,140 - 3,813,449 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDSS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl173,235,100 - 73,510,535 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1173,234,950 - 73,510,533 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,739,757 - 82,746,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDSS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,405,014 - 66,704,559 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1366,405,521 - 66,704,696 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604038,729,663 - 39,030,971 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdss2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478014,804,030 - 15,129,497 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478014,803,750 - 15,130,156 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000048470   ⟹   ENSPPAP00000025641
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6108,833,223 - 109,137,055 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000048471   ⟹   ENSPPAP00000025642
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6108,942,690 - 109,137,055 (-)Ensembl
RefSeq Acc Id: XM_003824334   ⟹   XP_003824382
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25127,169,566 - 127,480,299 (-)NCBI
NHGRI_mPanPan16125,059,474 - 125,370,427 (-)NCBI
Mhudiblu_PPA_v06104,963,942 - 105,272,783 (-)NCBI
PanPan1.16108,831,154 - 109,137,354 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034962650   ⟹   XP_034818541
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25127,169,566 - 127,480,303 (-)NCBI
NHGRI_mPanPan16125,059,474 - 125,370,427 (-)NCBI
Mhudiblu_PPA_v06104,965,365 - 105,272,807 (-)NCBI
RefSeq Acc Id: XM_055114001   ⟹   XP_054969976
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25127,192,255 - 127,480,305 (-)NCBI
NHGRI_mPanPan16125,082,164 - 125,370,427 (-)NCBI
RefSeq Acc Id: XM_055114002   ⟹   XP_054969977
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25127,192,249 - 127,480,302 (-)NCBI
NHGRI_mPanPan16125,082,198 - 125,370,427 (-)NCBI
RefSeq Acc Id: XM_055114003   ⟹   XP_054969978
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25127,192,255 - 127,480,308 (-)NCBI
NHGRI_mPanPan16125,082,164 - 125,370,427 (-)NCBI
RefSeq Acc Id: XM_063604968   ⟹   XP_063461038
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25127,200,532 - 127,480,307 (-)NCBI
RefSeq Acc Id: XM_063604969   ⟹   XP_063461039
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v25127,194,391 - 127,480,304 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003824382   ⟸   XM_003824334
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BBJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034818541   ⟸   XM_034962650
- Peptide Label: isoform X5
RefSeq Acc Id: ENSPPAP00000025641   ⟸   ENSPPAT00000048470
RefSeq Acc Id: ENSPPAP00000025642   ⟸   ENSPPAT00000048471
RefSeq Acc Id: XP_054969978   ⟸   XM_055114003
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054969976   ⟸   XM_055114001
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054969977   ⟸   XM_055114002
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063461039   ⟸   XM_063604969
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063461038   ⟸   XM_063604968
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035956 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048470.1 UniProtKB/TrEMBL
  ENSPPAT00000048471.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.600.10 UniProtKB/TrEMBL
InterPro Isoprenoid_synthase_dom_sf UniProtKB/TrEMBL
  Polyprenyl_synt UniProtKB/TrEMBL
KEGG Report pps:100974595 UniProtKB/TrEMBL
NCBI Gene PDSS2 ENTREZGENE
PANTHER ALL TRANS-POLYPRENYL-DIPHOSPHATE SYNTHASE PDSS2 UniProtKB/TrEMBL
  GERANYLGERANYL PYROPHOSPHATE SYNTHASE UniProtKB/TrEMBL
Pfam polyprenyl_synt UniProtKB/TrEMBL
Superfamily-SCOP SSF48576 UniProtKB/TrEMBL
UniProt A0A2R9B974_PANPA UniProtKB/TrEMBL
  A0A2R9BBJ7 ENTREZGENE, UniProtKB/TrEMBL