Pdss2 (prenyl (solanesyl) diphosphate synthase, subunit 2) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Pdss2 (prenyl (solanesyl) diphosphate synthase, subunit 2) Mus musculus
Analyze
Symbol: Pdss2
Name: prenyl (solanesyl) diphosphate synthase, subunit 2
RGD ID: 1615065
MGI Page MGI
Description: Enables protein heterodimerization activity. Contributes to all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity. Involved in cerebellum development; isoprenoid biosynthetic process; and ubiquinone biosynthetic process. Acts upstream of or within regulation of body fluid levels. Located in mitochondrion. Part of heterotetrameric polyprenyl diphosphate synthase complex. Is expressed in several structures, including endocrine gland; genitourinary system; heart; nervous system; and stomach. Used to study coenzyme Q10 deficiency disease. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 3. Orthologous to human PDSS2 (decaprenyl diphosphate synthase subunit 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5430420P03Rik; all trans-polyprenyl-diphosphate synthase PDSS2; all-trans-decaprenyl-diphosphate synthase subunit 2; decaprenyl pyrophosphate synthase subunit 2; decaprenyl pyrophosphate synthetase subunit 2; decaprenyl-diphosphate synthase subunit 2; Gm60; kd; mDL; mDLP1; P; Plmp; prenyltransferase-like mitochondrial protein; solanesyl-diphosphate synthase subunit 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,095,396 - 43,340,878 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1043,097,482 - 43,340,878 (+)EnsemblGRCm39 Ensembl
GRCm381043,218,248 - 43,464,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,221,486 - 43,464,882 (+)EnsemblGRCm38mm10GRCm38
MGSCv371042,941,292 - 43,184,688 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361042,909,901 - 43,153,297 (+)NCBIMGSCv36mm8
Celera1044,087,907 - 44,331,621 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal aerobic respiration  (IAGP)
abnormal cell morphology  (IAGP)
abnormal cellular respiration  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellum development  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal circulating cholesterol level  (IAGP)
abnormal embryonic/fetal subventricular zone morphology  (IAGP)
abnormal energy homeostasis  (IAGP)
abnormal enzyme/coenzyme level  (IAGP)
abnormal gait  (IAGP)
abnormal glomerular capsule parietal layer morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal mitochondrial ATP synthesis coupled electron transport  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal mitophagy  (IAGP)
abnormal motor coordination/balance  (IAGP)
abnormal palatine bone horizontal plate morphology  (IAGP)
abnormal podocyte morphology  (IAGP)
abnormal Purkinje cell migration  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal renal glomerulus basement membrane morphology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal renal tubule morphology  (IAGP)
abnormal respiratory electron transport chain  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal tooth morphology  (IEA)
absent gastric milk in neonates  (IAGP)
absent Purkinje cell layer  (IAGP)
albuminuria  (IAGP)
ataxia  (IAGP)
cataract  (IEA)
cerebellum hypoplasia  (IAGP)
cerebellum vermis hypoplasia  (IAGP)
cleft palate  (IAGP)
colorless urine  (IAGP)
decreased anxiety-related response  (IEA)
decreased hepatocyte mitochondrial DNA content  (IAGP)
decreased midbrain size  (IAGP)
decreased mitochondrial DNA content  (IAGP)
decreased Purkinje cell number  (IAGP)
decreased radial glial cell number  (IAGP)
decreased thigmotaxis  (IEA)
dilated renal tubule  (IAGP)
dysphagia  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality prior to organogenesis  (IEA)
embryonic lethality prior to tooth bud stage  (IEA)
glomerulosclerosis  (IAGP)
granular kidney  (IAGP)
hunched posture  (IAGP)
impaired balance  (IAGP)
increased circulating bilirubin level  (IEA)
increased circulating cholesterol level  (IAGP)
increased mitochondrial DNA content  (IAGP)
increased neuron apoptosis  (IAGP)
increased total body fat amount  (IEA)
kidney atrophy  (IAGP)
kidney cyst  (IAGP)
micrognathia  (IAGP)
midbrain hypoplasia  (IAGP)
myopathy  (IAGP)
oxidative stress  (IAGP)
pale kidney  (IAGP)
podocyte foot process effacement  (IAGP)
polydipsia  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IEA)
Purkinje cell degeneration  (IAGP)
renal cast  (IAGP)
renal interstitial fibrosis  (IAGP)
renal tubule atrophy  (IAGP)
respiratory distress  (IAGP)
short mandible  (IAGP)
short stride length  (IAGP)
small cerebellum  (IAGP)
thrombocytopenia  (IEA)
tubulointerstitial nephritis  (IAGP)
vertebral fusion  (IEA)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:275859   PMID:2416810   PMID:5098070   PMID:6384368   PMID:7930848   PMID:9342617   PMID:10349636   PMID:11042159   PMID:11063251   PMID:11076861   PMID:11217851   PMID:12466851  
PMID:12477932   PMID:12960297   PMID:14600027   PMID:14610273   PMID:15200409   PMID:16120817   PMID:16141072   PMID:16141073   PMID:16262699   PMID:16282678   PMID:16337774   PMID:18437205  
PMID:18614015   PMID:18784258   PMID:21221075   PMID:21447381   PMID:21567994   PMID:21871565   PMID:21873635   PMID:21983691   PMID:23150520   PMID:24194600   PMID:26041819   PMID:26111777  
PMID:30251690   PMID:33913477   PMID:33929387   PMID:38355793  


Genomics

Comparative Map Data
Pdss2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391043,095,396 - 43,340,878 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1043,097,482 - 43,340,878 (+)EnsemblGRCm39 Ensembl
GRCm381043,218,248 - 43,464,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,221,486 - 43,464,882 (+)EnsemblGRCm38mm10GRCm38
MGSCv371042,941,292 - 43,184,688 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361042,909,901 - 43,153,297 (+)NCBIMGSCv36mm8
Celera1044,087,907 - 44,331,621 (+)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.91NCBI
PDSS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386107,152,562 - 107,459,564 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6107,152,562 - 107,459,564 (-)EnsemblGRCh38hg38GRCh38
GRCh376107,473,766 - 107,780,768 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366107,580,456 - 107,887,448 (-)NCBINCBI36Build 36hg18NCBI36
Build 346107,580,455 - 107,887,448NCBI
Celera6108,222,204 - 108,529,221 (-)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6105,044,813 - 105,351,570 (-)NCBIHuRef
CHM1_16107,736,502 - 108,043,494 (-)NCBICHM1_1
T2T-CHM13v2.06108,331,503 - 108,638,499 (-)NCBIT2T-CHM13v2.0
Pdss2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,291,788 - 48,520,846 (+)NCBIGRCr8
mRatBN7.22046,709,631 - 46,938,704 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,709,649 - 46,938,708 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2048,427,244 - 48,652,775 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02048,077,260 - 48,302,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02048,762,116 - 48,986,591 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02047,966,513 - 48,192,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,966,583 - 48,192,743 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02049,627,299 - 49,699,472 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02049,750,928 - 49,851,503 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42047,128,350 - 47,359,830 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12047,157,046 - 47,388,523 (+)NCBI
Celera2053,049,724 - 53,270,077 (-)NCBICelera
Cytogenetic Map20q13NCBI
Pdss2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,422,513 - 32,714,062 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541132,426,604 - 32,714,337 (-)NCBIChiLan1.0ChiLan1.0
PDSS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25127,169,566 - 127,480,308 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16125,059,474 - 125,370,427 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06104,963,942 - 105,272,807 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16108,831,154 - 109,137,354 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6108,833,223 - 109,137,055 (-)Ensemblpanpan1.1panPan2
PDSS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,371,548 - 64,620,652 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1264,338,950 - 64,620,367 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1264,157,690 - 64,407,542 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01265,214,682 - 65,465,310 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1265,182,538 - 65,465,358 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11264,574,421 - 64,823,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01264,417,912 - 64,668,719 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01264,692,925 - 64,942,617 (-)NCBIUU_Cfam_GSD_1.0
Pdss2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494699,254,277 - 99,538,434 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365643,583,396 - 3,813,155 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365643,529,140 - 3,813,449 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDSS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl173,235,100 - 73,510,535 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1173,234,950 - 73,510,533 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,739,757 - 82,746,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDSS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,405,014 - 66,704,559 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1366,405,521 - 66,704,696 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604038,729,663 - 39,030,971 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdss2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478014,804,030 - 15,129,497 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478014,803,750 - 15,130,156 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pdss2
7091 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1457
Count of miRNA genes:700
Interacting mature miRNAs:892
Transcripts:ENSMUST00000095725, ENSMUST00000159139, ENSMUST00000160108, ENSMUST00000160823, ENSMUST00000162008, ENSMUST00000162758
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102028318556031223Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
21079434Bdym5_mbody mass QTL 5 (mouse)104054599654836096Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103097449964974630Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
10755518Chol16_mcholesterol 16 (mouse)101891504352915043Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103157713665577284Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103377599670835830Mouse
26884394Humsd3_mhumerus midshaft diameter 3, 10 week (mouse)102237589951076096Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102972040363720483Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4123732675237326Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
4142209Psrs1_mpsoriasis susceptibility 1 (mouse)Not determined102689026446720483Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse

Markers in Region
G64322  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381043,334,791 - 43,334,977UniSTSGRCm38
MGSCv371043,054,597 - 43,054,783UniSTSGRCm37
Celera1044,201,240 - 44,201,426UniSTS
Cytogenetic Map10B2UniSTS
cM Map1030.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_871439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB210840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC152922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC172142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY733519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000095725   ⟹   ENSMUSP00000093393
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,097,482 - 43,316,598 (+)Ensembl
GRCm38.p6 Ensembl1043,221,486 - 43,440,602 (+)Ensembl
Ensembl Acc Id: ENSMUST00000159139   ⟹   ENSMUSP00000124864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,097,596 - 43,340,878 (+)Ensembl
GRCm38.p6 Ensembl1043,221,600 - 43,464,882 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,097,513 - 43,222,515 (+)Ensembl
GRCm38.p6 Ensembl1043,221,517 - 43,346,519 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160823   ⟹   ENSMUSP00000124046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,097,482 - 43,281,391 (+)Ensembl
GRCm38.p6 Ensembl1043,221,486 - 43,405,395 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162008   ⟹   ENSMUSP00000124440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,269,917 - 43,316,244 (+)Ensembl
GRCm38.p6 Ensembl1043,393,921 - 43,440,248 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1043,097,732 - 43,222,112 (+)Ensembl
GRCm38.p6 Ensembl1043,221,736 - 43,346,116 (+)Ensembl
RefSeq Acc Id: NM_001168289   ⟹   NP_001161761
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,097,482 - 43,340,878 (+)NCBI
GRCm381043,221,486 - 43,464,882 (+)NCBI
MGSCv371042,941,292 - 43,184,688 (+)RGD
Celera1044,087,907 - 44,331,621 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_027772   ⟹   NP_082048
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,097,482 - 43,316,244 (+)NCBI
GRCm381043,221,486 - 43,440,248 (+)NCBI
MGSCv371042,941,292 - 43,184,688 (+)RGD
Celera1044,087,907 - 44,331,621 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512852   ⟹   XP_006512915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,095,396 - 43,316,598 (+)NCBI
GRCm381043,218,248 - 43,440,602 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512853   ⟹   XP_006512916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,095,396 - 43,284,262 (+)NCBI
GRCm381043,218,248 - 43,408,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512854   ⟹   XP_006512917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,095,396 - 43,316,598 (+)NCBI
GRCm381043,218,248 - 43,440,602 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156015   ⟹   XP_036011908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,095,396 - 43,316,598 (+)NCBI
Sequence:
RefSeq Acc Id: XR_871439
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391043,095,396 - 43,282,787 (+)NCBI
GRCm381043,218,248 - 43,406,791 (+)NCBI
Sequence:
RefSeq Acc Id: NP_082048   ⟸   NM_027772
- Peptide Label: isoform 1
- UniProtKB: Q3USU6 (UniProtKB/Swiss-Prot),   B2RWF3 (UniProtKB/Swiss-Prot),   B2RWA7 (UniProtKB/Swiss-Prot),   Q9D3K7 (UniProtKB/Swiss-Prot),   Q33DR3 (UniProtKB/Swiss-Prot),   E0CYM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001161761   ⟸   NM_001168289
- Peptide Label: isoform 2
- UniProtKB: E0CYM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512917   ⟸   XM_006512854
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006512915   ⟸   XM_006512852
- Peptide Label: isoform X1
- UniProtKB: E0CYM9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512916   ⟸   XM_006512853
- Peptide Label: isoform X2
- UniProtKB: E0CYM9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000124864   ⟸   ENSMUST00000159139
Ensembl Acc Id: ENSMUSP00000124046   ⟸   ENSMUST00000160823
Ensembl Acc Id: ENSMUSP00000093393   ⟸   ENSMUST00000095725
Ensembl Acc Id: ENSMUSP00000124440   ⟸   ENSMUST00000162008
RefSeq Acc Id: XP_036011908   ⟸   XM_036156015
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q33DR3-F1-model_v2 AlphaFold Q33DR3 1-401 view protein structure

Promoters
RGD ID:6818814
Promoter ID:MM_KWN:4037
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK017348_5430427G11RIK,   ENSMUST00000105493,   NM_001168289,   NM_027772,   UC007EZH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361042,939,851 - 42,941,262 (-)MPROMDB
RGD ID:8671908
Promoter ID:EPDNEW_M13985
Type:initiation region
Name:Pdss2_1
Description:Mus musculus prenyl diphosphate synthase, subunit 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381043,221,486 - 43,221,546EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918615 AgrOrtholog
Ensembl Genes ENSMUSG00000038240 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000095725 ENTREZGENE
  ENSMUST00000095725.11 UniProtKB/Swiss-Prot
  ENSMUST00000159139 ENTREZGENE
  ENSMUST00000159139.8 UniProtKB/Swiss-Prot
  ENSMUST00000160823 ENTREZGENE
  ENSMUST00000160823.8 UniProtKB/TrEMBL
  ENSMUST00000162008.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.600.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Isoprenoid_synthase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Polyprenyl_synt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71365 UniProtKB/Swiss-Prot
MGD MGI:1918615 ENTREZGENE
NCBI Gene 71365 ENTREZGENE
PANTHER ALL TRANS-POLYPRENYL-DIPHOSPHATE SYNTHASE PDSS2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GERANYLGERANYL PYROPHOSPHATE SYNTHASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam polyprenyl_synt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pdss2 PhenoGen
Superfamily-SCOP SSF48576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RWA7 ENTREZGENE
  B2RWF3 ENTREZGENE
  DLP1_MOUSE UniProtKB/Swiss-Prot
  E0CYM9 ENTREZGENE, UniProtKB/TrEMBL
  F6T4Z4_MOUSE UniProtKB/TrEMBL
  Q33DR3 ENTREZGENE
  Q3USU6 ENTREZGENE
  Q9D3K7 ENTREZGENE
UniProt Secondary B2RWA7 UniProtKB/Swiss-Prot
  B2RWF3 UniProtKB/Swiss-Prot
  Q3USU6 UniProtKB/Swiss-Prot
  Q9D3K7 UniProtKB/Swiss-Prot