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ONTOLOGY REPORT - ANNOTATIONS

Term:rhombomere development
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Accession:GO:0021546 term browser browse the term
Definition:The process whose specific outcome is the progression of the rhombomere over time, from its formation to the mature structure. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates.


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rhombomere development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO (MGI:4949985|PMID:21320481) RGD PMID:21320481 MGI:4949985 NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836 		JBrowse link
G Hoxb3 homeo box B3 acts_upstream_of_or_within ISO (MGI:4949985|PMID:21320481) RGD PMID:21320481 MGI:4949985 NCBI chr10:81,258,739...81,314,134
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
rhombomere 2 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (MGI:3624192|PMID:16651541) RGD PMID:16651541 MGI:3624192 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857626 (MGI:1341029|PMID:7508007)
GO_REF:0000107		 RGD
Ensembl		 PMID:7508007 GO_REF:0000107 MGI:1341029 Ensembl chr 4:81,262,768...81,265,044 JBrowse link
rhombomere 3 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO MGI:96170 (MGI:1306866|PMID:9806922) RGD PMID:9806922 MGI:1306866 NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504|MGI:95296 (MGI:1306866|PMID:9806922) RGD PMID:9806922 MGI:1306866 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO MGI:96183 (MGI:1341029|PMID:7508007) RGD PMID:7508007 MGI:1341029 Ensembl chr 4:81,262,768...81,265,044 JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:96174 (MGI:1335668|PMID:10230789) RGD PMID:10230789 MGI:1335668 NCBI chr10:81,317,927...81,320,223
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
rhombomere 3 formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO MGI:1857507 (MGI:64171|PMID:7903221) RGD PMID:7903221 MGI:64171 NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562 		JBrowse link
rhombomere 3 morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857626 (MGI:1335668|PMID:10230789)
GO_REF:0000107		 RGD
Ensembl		 PMID:10230789 GO_REF:0000107 MGI:1335668 Ensembl chr 4:81,262,768...81,265,044 JBrowse link
rhombomere 3 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:52248|PMID:8093858)		 UniProt
RGD		 PMID:8093858 GO_REF:0000024 MGI:52248 NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562 		JBrowse link
rhombomere 4 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504|MGI:96182 (MGI:1306866|PMID:9806922), (MGI:1346308|PMID:10529420), (MGI:62658|PMID:8102800) RGD PMID:8102800 PMID:9806922 PMID:10529420 MGI:1306866 MGI:1346308 MGI:62658 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:96170 (MGI:1346308|PMID:10529420) RGD PMID:10529420 MGI:1346308 NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:96174 (MGI:1335668|PMID:10230789) RGD PMID:10230789 MGI:1335668 NCBI chr10:81,317,927...81,320,223
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
rhombomere 5 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504|MGI:96182 (MGI:1306866|PMID:9806922), (MGI:1346308|PMID:10529420), (MGI:62658|PMID:8102800) RGD PMID:8102800 PMID:9806922 PMID:10529420 MGI:1306866 MGI:1346308 MGI:62658 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:96170 (MGI:1346308|PMID:10529420) RGD PMID:10529420 MGI:1346308 NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:1856419 (MGI:67780|PMID:7925021) RGD PMID:7925021 MGI:67780 NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
rhombomere 5 formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO MGI:1857507 (MGI:64171|PMID:7903221) RGD PMID:7903221 MGI:64171 NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562 		JBrowse link
rhombomere 5 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:52248|PMID:8093858), (MGI:6393337|PMID:11823429)		 UniProt
RGD		 PMID:8093858 PMID:11823429 GO_REF:0000024 MGI:52248 MGI:6393337 NCBI chr20:21,051,270...21,056,322
Ensembl chr20:21,051,277...21,055,562 		JBrowse link
rhombomere 6 development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:1856419 (MGI:67780|PMID:7925021) RGD PMID:7925021 MGI:67780 NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
rhombomere morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 IMP RGD PMID:21501682 RGD:8552349 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19738
    developmental process 6867
      anatomical structure development 6387
        rhombomere development 9
          rhombomere 1 development + 0
          rhombomere 2 development + 2
          rhombomere 3 development + 4
          rhombomere 4 development + 3
          rhombomere 5 development + 4
          rhombomere 6 development + 1
          rhombomere 7 development + 0
          rhombomere 8 development + 0
          rhombomere cell differentiation 0
          rhombomere cell migration 0
          rhombomere cell proliferation 0
          rhombomere morphogenesis + 3
Path 2
Term Annotations click to browse term
  biological_process 19738
    developmental process 6867
      anatomical structure development 6387
        multicellular organism development 5151
          system development 4434
            nervous system development 2716
              central nervous system development 1193
                brain development 892
                  hindbrain development 227
                    rhombomere development 9
                      rhombomere 1 development + 0
                      rhombomere 2 development + 2
                      rhombomere 3 development + 4
                      rhombomere 4 development + 3
                      rhombomere 5 development + 4
                      rhombomere 6 development + 1
                      rhombomere 7 development + 0
                      rhombomere 8 development + 0
                      rhombomere cell differentiation 0
                      rhombomere cell migration 0
                      rhombomere cell proliferation 0
                      rhombomere morphogenesis + 3
paths to the root