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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:parasitic protozoa infectious disease
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Accession:DOID:2789 term browser browse the term
Definition:A parasitic infectious disease that is caused by parasitic protozoa which are microorganisms classified as unicellular eukaryotes. (DO)
Synonyms:exact_synonym: histomoniases;   histomoniasis;   mastigophora infectious disease;   protozoan infection;   protozoan infections;   sarcomastigophora infectious disease
 xref: ICD10CM:B64;   MESH:D011528;   MONDO:0002428;   NCI:C34953
For additional species annotation, visit the Alliance of Genome Resources.



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Acanthamoeba Keratitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr4 toll-like receptor 4 IEP mRNA,protein:increased expression:cornea RGD PMID:21155840 RGD:7777095 NCBI chr 5:85,161,247...85,174,882 JBrowse link
Amebic Liver Abscess term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il2 interleukin 2 treatment ISO RGD PMID:10862314 RGD:14928216 NCBI chr 2:121,932,968...121,937,672 JBrowse link
G Il23a interleukin 23 subunit alpha ISO mRNA:increased expression:liver (mouse) RGD PMID:26809113 RGD:39458041 NCBI chr 7:1,306,320...1,308,434 JBrowse link
G RT1-Bb RT1 class II, locus Bb susceptibility ISO DNA:polymorphism, haplotype: :HLA-DQB1*04, HLA-DQB1*02 RGD PMID:25938667 RGD:36049810 NCBI chr20:4,598,475...4,604,118 JBrowse link
G RT1-Db1 RT1 class II, locus Db1 susceptibility ISO DNA:polymorphism, haplotype: :HLA-DRB1*08 RGD PMID:25938667 RGD:36049810 NCBI chr20:4,548,664...4,558,237 JBrowse link
G Tnf tumor necrosis factor treatment ISO RGD PMID:10862314 RGD:14928216 NCBI chr20:3,626,685...3,629,303 JBrowse link
Amoebic Dysentery due to Entamoeba Histolytica term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il25 interleukin 25 ISO protein:decreased expression:intestine RGD PMID:28246365 RGD:39128243 NCBI chr15:28,408,766...28,412,157 JBrowse link
Animal Toxoplasmosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl5 C-C motif chemokine ligand 5 IEP mRNA, protein:increased expression:blood vessel endothelial cell RGD PMID:15710456 RGD:2307183 NCBI chr10:68,820,330...68,824,906 JBrowse link
G Ccr2 C-C motif chemokine receptor 2 ISO RGD PMID:19741601 RGD:8661685 NCBI chr 8:132,611,883...132,619,106 JBrowse link
G Cd209d CD209d molecule treatment ISO RGD PMID:32391004 RGD:39939012 NCBI chr12:1,891,109...1,897,559 JBrowse link
G Foxp3 forkhead box P3 ISO mRNA:decreased expression:placenta: RGD PMID:21923716 RGD:38501105 NCBI chr  X:17,580,380...17,601,181 JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 ISO RGD PMID:8881756 RGD:12910478 NCBI chr 9:64,073,610...64,084,332 JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 ISO RGD PMID:31231617 RGD:39939039 NCBI chr16:74,133,259...74,145,328 JBrowse link
G Il17a interleukin 17A ISO mRNA,protein:increased expression:placenta: RGD PMID:21923716 RGD:38501105 NCBI chr 9:30,640,844...30,644,331 JBrowse link
G Il21 interleukin 21 ISO RGD PMID:23667536 RGD:127285360 NCBI chr 2:120,117,105...120,127,012 JBrowse link
G Il23a interleukin 23 subunit alpha ISO RGD PMID:15265921 RGD:39457943 NCBI chr 7:1,306,320...1,308,434 JBrowse link
G Il2rb interleukin 2 receptor subunit beta ameliorates ISO RGD PMID:11286020 RGD:42724468 NCBI chr 7:110,033,341...110,048,054 JBrowse link
G Il6 interleukin 6 ISO mRNA:increased expression:placenta: RGD PMID:21923716 RGD:38501105 NCBI chr 4:5,889,999...5,894,575 JBrowse link
G Ldlr low density lipoprotein receptor ISO RGD PMID:18316222 RGD:5490254 NCBI chr 8:20,270,020...20,292,981 JBrowse link
G Mir146a microRNA 146a ameliorates ISO RGD PMID:24582962 RGD:126925172 NCBI chr10:28,349,996...28,350,090 JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 ISO RGD PMID:25855987 RGD:11057198 NCBI chr 3:41,689,847...41,707,036 JBrowse link
G Rorc RAR-related orphan receptor C ISO mRNA:increased expression:placenta: RGD PMID:21923716 RGD:38501105 NCBI chr 2:184,698,779...184,723,942 JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 severity ISO RGD PMID:31416833 RGD:39128220 NCBI chr18:27,606,196...27,612,544 JBrowse link
babesiosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO protein:decreased expression:serum (human) RGD PMID:25539588 RGD:11541121 NCBI chr10:92,090,263...92,152,002 JBrowse link
boutonneuse fever term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3 complement C3 ISO protein:increased expression:serum RGD PMID:3361150 RGD:11041575 NCBI chr 9:2,174,412...2,201,339 JBrowse link
G Cfb complement factor B ISO protein:increased expression:serum RGD PMID:3361150 RGD:11041575 NCBI chr20:3,970,643...3,976,510 JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 ISO RGD PMID:14507644 RGD:5135450 NCBI chr14:15,989,066...15,991,263 JBrowse link
G Cxcl9 C-X-C motif chemokine ligand 9 ISO RGD PMID:14507644 RGD:5135450 NCBI chr14:16,007,166...16,012,077 JBrowse link
cerebral malaria term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ace2 angiotensin converting enzyme 2 susceptibility ISO DNA:SNP:intron 1: C>T RGD PMID:20117248 RGD:40818420 NCBI chr  X:30,293,597...30,340,961 JBrowse link
G Aqp4 aquaporin 4 disease_progression ISO protein:increased expression:astrocyte: RGD PMID:21904632 RGD:8698661 NCBI chr18:6,782,389...6,799,034 JBrowse link
G Cast calpastatin ISO protein:increased express:brain RGD PMID:16236382 RGD:5509817 NCBI chr 2:5,707,633...5,817,213 JBrowse link
G Cd36 CD36 molecule ISO RGD PMID:17367535 RGD:6893527 NCBI chr 4:18,209,088...18,302,142 JBrowse link
G Clec12a C-type lectin domain family 12, member A ameliorates ISO RGD PMID:31269448 RGD:41412201 NCBI chr 4:162,798,125...162,816,757 JBrowse link
G Il1rl1 interleukin 1 receptor-like 1 treatment ISO RGD PMID:25682948 RGD:40400741 NCBI chr 9:42,661,694...42,727,266 JBrowse link
G Il33 interleukin 33 treatment ISO protein:increased expression:brain RGD PMID:25659095 PMID:25682948 RGD:39938955, RGD:40400741 NCBI chr 1:227,701,964...227,736,374 JBrowse link
G Jak3 Janus kinase 3 ISO RGD PMID:22363534 RGD:11531103 NCBI chr16:18,418,807...18,432,515 JBrowse link
G Lta lymphotoxin alpha ISO RGD PMID:12021316 RGD:10449455 NCBI chr20:3,622,291...3,625,852 JBrowse link
G Nrg1 neuregulin 1 treatment ISO mRNA, protein:increased expression:cerebral cortex (mouse)
human protein in a mouse model
RGD PMID:29636063 PMID:24433482 RGD:39456084, RGD:39456102 NCBI chr16:65,954,084...67,007,484 JBrowse link
G Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma ISO RGD PMID:25775137 RGD:38599200 NCBI chr 6:54,494,247...54,529,563 JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 ISO mRNA:decreased expression:brain (mouse) RGD PMID:29107705 RGD:39456137 NCBI chr 5:125,036,945...125,109,010 JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B ISO RGD PMID:12228317 RGD:5131158 NCBI chr 5:157,070,642...157,104,216 JBrowse link
Cerebral Toxoplasmosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfkb1 nuclear factor kappa B subunit 1 severity ISO RGD PMID:20156658 RGD:40902838 NCBI chr 2:226,689,745...226,805,897 JBrowse link
Chagas Cardiomyopathy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il10 interleukin 10 treatment IDA RGD PMID:24055715 RGD:7364866 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Il23a interleukin 23 subunit alpha ISO RGD PMID:28356392 RGD:39457935 NCBI chr 7:1,306,320...1,308,434 JBrowse link
G Mbl2 mannose binding lectin 2 severity ISO RGD PMID:26745156 RGD:11076757 NCBI chr 1:237,429,873...237,465,567 JBrowse link
G Pcna proliferating cell nuclear antigen IEP protein:increased expression:myocardium: RGD PMID:12435130 RGD:10448990 NCBI chr 3:139,951,948...139,955,820 JBrowse link
G Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma disease_progression ISO mRNA:increased expression:heart (mouse)
mRNA:increased expression:heart (human)
RGD PMID:29666415 PMID:29666415 PMID:29666415 RGD:38599151, RGD:38599151, RGD:38599151 NCBI chr 6:54,494,247...54,529,563 JBrowse link
G RT1-Db1 RT1 class II, locus Db1 susceptibility ISO DNA:polymorphism:exon (human) RGD PMID:19811437 RGD:5147589 NCBI chr20:4,548,664...4,558,237 JBrowse link
Chagas disease term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:16844401 RGD:2307145 NCBI chr10:67,503,077...67,504,875 JBrowse link
G Ccl3 C-C motif chemokine ligand 3 IEP RGD PMID:16844401 RGD:2307145 NCBI chr10:68,948,889...68,950,439 JBrowse link
G Ccl5 C-C motif chemokine ligand 5 IMP RGD PMID:20452453 RGD:4889906 NCBI chr10:68,820,330...68,824,906 JBrowse link
G Chrm2 cholinergic receptor, muscarinic 2 ISO RGD PMID:9148906 RGD:5509585 NCBI chr 4:65,981,136...66,116,128 JBrowse link
G F2 coagulation factor II, thrombin ISO protein:increased expression:blood plasma (human) RGD PMID:20699256 PMID:21866301 RGD:5147778, RGD:40818435 NCBI chr 3:98,051,958...98,065,246 JBrowse link
G Hspa4 heat shock protein family A (Hsp70) member 4 ISO RGD PMID:21801456 RGD:6218957 NCBI chr10:37,908,866...37,951,994 JBrowse link
G Ifng interferon gamma IDA RGD PMID:10684988 RGD:10755744 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Il23a interleukin 23 subunit alpha susceptibility ISO RGD PMID:23182712 RGD:39457956 NCBI chr 7:1,306,320...1,308,434 JBrowse link
G Prg2 proteoglycan 2, pro eosinophil major basic protein ISO mRNA:increased expression:plancenta (human) RGD PMID:29545200 RGD:40902989 NCBI chr 3:70,062,535...70,066,102 JBrowse link
G RT1-Db1 RT1 class II, locus Db1 susceptibility ISO DNA:polymorphisms:exon (human) RGD PMID:19811437 RGD:5147589 NCBI chr20:4,548,664...4,558,237 JBrowse link
G Soat1 sterol O-acyltransferase 1 ameliorates ISO DNA:SNP:exon: rs1044925 (human) RGD PMID:31236660 RGD:126925205 NCBI chr13:68,552,274...68,597,529 JBrowse link
G Vim vimentin severity IEP
ISO
protein:increased expression:plasma RGD PMID:22199233 PMID:22199233 RGD:6480538, RGD:6480538 NCBI chr17:81,577,261...81,585,746 JBrowse link
coccidiosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il2rb interleukin 2 receptor subunit beta exacerbates ISO RGD PMID:20460838 RGD:42724464 NCBI chr 7:110,033,341...110,048,054 JBrowse link
congenital toxoplasmosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-Ba RT1 class II, locus Ba susceptibility ISO DNA:polymorphisms: :HLA-DQA1*01:03, HLA-DQA1*03:02 (human) RGD PMID:26856406 RGD:126928144 NCBI chr20:4,575,134...4,579,727 JBrowse link
Crimean-Congo hemorrhagic fever term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifna1 interferon, alpha 1 susceptibility ISO DNA:SNP:promoter: -1823G>A (rs1332190)(human) RGD PMID:26694082 RGD:36174029 NCBI chr 5:103,097,356...103,097,925 JBrowse link
cryptosporidiosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mbl2 mannose binding lectin 2 susceptibility ISO DNA:polymorphisms, haplotype:promoter,exon: RGD PMID:19827946 RGD:12910843 NCBI chr 1:237,429,873...237,465,567 JBrowse link
G Mir21 microRNA 21 ISO RNA:increased expression:ileum RGD PMID:25838265 RGD:40925950 NCBI chr10:71,902,600...71,902,691 JBrowse link
cutaneous leishmaniasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cat catalase ISO protein:decreased activity:erythrocyte: RGD PMID:9892499 RGD:9479188 NCBI chr 3:110,297,340...110,329,526 JBrowse link
G Ccl2 C-C motif chemokine ligand 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20102417 NCBI chr10:67,503,077...67,504,875 JBrowse link
G Ccr1 C-C motif chemokine receptor 1 ISO RGD PMID:12874303 RGD:5688168 NCBI chr 8:123,556,286...123,561,841 JBrowse link
G Ccr2 C-C motif chemokine receptor 2 ISO mRNA:increased expression:foot, lymph node RGD PMID:12874303 RGD:5688168 NCBI chr 8:132,611,883...132,619,106 JBrowse link
G Ccr5 C-C motif chemokine receptor 5 no_association ISO DNA:frameshift mutation: :p.S185_T195del (rs333) (human) RGD PMID:23632983 PMID:17214851 RGD:8549764, RGD:8549765 NCBI chr 8:132,629,097...132,660,980 JBrowse link
G Cd163 CD163 molecule ISO mRNA, protein:increased expression:skin of body, blood plasma, CD14-positive monocyte (human) RGD PMID:32023254 RGD:127345130 NCBI chr 4:157,085,080...157,118,470 JBrowse link
G Cd274 CD274 molecule ISO RGD PMID:16358363 RGD:41410801 NCBI chr 1:236,526,215...236,549,956 JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO DNA:SNPs: :rs1061237, rs2586488 (human) RGD PMID:25562121 RGD:11041176 NCBI chr10:80,380,458...80,397,461 JBrowse link
G Foxp3 forkhead box P3 ISO mRNA:increased expression:Peripheral blood mononuclear cell: RGD PMID:29205403 RGD:38455981 NCBI chr  X:17,580,380...17,601,181 JBrowse link
G Ifng interferon gamma treatment ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD
RGD
PMID:8154019 PMID:9234779 PMID:20102417 PMID:27999013 RGD:40890273 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Il10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:Peripheral blood mononuclear cell:
CTD
RGD
PMID:20102417 PMID:29205403 RGD:38455981 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Il13 interleukin 13 treatment ISO RGD PMID:12739821 PMID:18924210 RGD:8549536, RGD:8549561 NCBI chr10:38,290,926...38,293,483 JBrowse link
G Il17a interleukin 17A ISO mRNA:increased expression:Peripheral blood mononuclear cell: RGD PMID:29205403 RGD:38455981 NCBI chr 9:30,640,844...30,644,331 JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:20102417 NCBI chr 3:137,030,200...137,036,581 JBrowse link
G Il23a interleukin 23 subunit alpha ISO RGD PMID:29078003 RGD:39457938 NCBI chr 7:1,306,320...1,308,434 JBrowse link
G Il4 interleukin 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20102417 NCBI chr10:38,272,003...38,277,549 JBrowse link
G Klrk1 killer cell lectin like receptor K1 treatment ISO associated with lymphocytic choriomeningitis RGD PMID:26290604 RGD:39128165 NCBI chr 4:163,079,887...163,092,434 JBrowse link
G Lta lymphotoxin alpha no_association ISO DNA:SNP:intron:252A>G (human) RGD PMID:16950634 RGD:8548800 NCBI chr20:3,622,291...3,625,852 JBrowse link
G Ltb lymphotoxin beta ISO RGD PMID:17911622 RGD:8548820 NCBI chr20:3,632,209...3,634,054 JBrowse link
G Mmp2 matrix metallopeptidase 2 treatment ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:21091666 PMID:21091666 RGD:8657030 NCBI chr19:30,327,643...30,355,856 JBrowse link
G Pdcd1lg2 programmed cell death 1 ligand 2 ISO RGD PMID:16358363 RGD:41410801 NCBI chr 1:227,158,941...227,223,938 JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta treatment ISO RGD PMID:27999013 RGD:40890273 NCBI chr 5:165,377,994...165,426,620 JBrowse link
G Slc11a1 solute carrier family 11 member 1 ISO DNA:insertion/deletion (human) RGD PMID:20089160 RGD:5684930 NCBI chr 9:75,957,193...75,968,115 JBrowse link
G Sod1 superoxide dismutase 1 ISO protein:increased activity:erythrocyte: RGD PMID:9892499 RGD:9479188 NCBI chr11:42,942,742...42,948,399 JBrowse link
G Stat4 signal transducer and activator of transcription 4 ISO RGD PMID:10458767 RGD:8661703 NCBI chr 9:49,472,660...49,588,540 JBrowse link
G Tlr2 toll-like receptor 2 ISO protein:decreased expression:skin: RGD PMID:20493664 RGD:7794748 NCBI chr 2:171,499,189...171,504,831 JBrowse link
G Tlr4 toll-like receptor 4 ISO protein:decreased expression:skin: RGD PMID:20493664 RGD:7794748 NCBI chr 5:85,161,247...85,174,882 JBrowse link
G Tlr9 toll-like receptor 9 ISO protein:decreased expression:skin: RGD PMID:20493664 RGD:7794748 NCBI chr 8:115,743,407...115,747,523 JBrowse link
G Tnf tumor necrosis factor no_association ISO DNA:SNP:promoter:-308G>A (rs1800629) (human)
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:20102417 PMID:16950634 RGD:8548800 NCBI chr20:3,626,685...3,629,303 JBrowse link
Entamoebiasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16374615 PMID:29255076 RGD:14975099 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Il10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16374615 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16374615 NCBI chr 3:137,030,200...137,036,581 JBrowse link
G Il2 interleukin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16374615 NCBI chr 2:121,932,968...121,937,672 JBrowse link
G Il5 interleukin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16374615 NCBI chr10:38,375,132...38,378,003 JBrowse link
G Il6 interleukin 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16374615 NCBI chr 4:5,889,999...5,894,575 JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 severity ISO RGD PMID:20086086 RGD:40902842 NCBI chr 2:226,689,745...226,805,897 JBrowse link
G Tlr4 toll-like receptor 4 ISO RGD PMID:15910421 RGD:7241086 NCBI chr 5:85,161,247...85,174,882 JBrowse link
leishmaniasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor ISO protein:increased expression:brain RGD PMID:25014011 RGD:8695986 NCBI chr20:4,152,758...4,155,956 JBrowse link
G Arg1 arginase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21232540 NCBI chr 1:22,295,093...22,307,720 JBrowse link
G Btk Bruton tyrosine kinase susceptibility ISO RGD PMID:28783468 RGD:124715477 NCBI chr  X:102,016,070...102,055,448 JBrowse link
G C3 complement C3 ISO RGD PMID:15378355 RGD:7401274 NCBI chr 9:2,174,412...2,201,339 JBrowse link
G Ccr2 C-C motif chemokine receptor 2 ISO RGD PMID:10899907 RGD:8661227 NCBI chr 8:132,611,883...132,619,106 JBrowse link
G Ccr5 C-C motif chemokine receptor 5 disease_progression ISO associated with HIV Infections;protein:increased expression:blood, T cell RGD PMID:10553079 PMID:17457607 RGD:8551832, RGD:8551841 NCBI chr 8:132,629,097...132,660,980 JBrowse link
G Crp C-reactive protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:17218153 NCBI chr13:87,694,062...87,695,978 JBrowse link
G Dusp1 dual specificity phosphatase 1 treatment ISO RGD PMID:21471446 RGD:7771536 NCBI chr10:17,184,853...17,187,646 JBrowse link
G Dusp6 dual specificity phosphatase 6 treatment ISO RGD PMID:21471446 RGD:7771536 NCBI chr 7:35,979,502...35,983,834 JBrowse link
G Ifng interferon gamma ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16540374 PMID:17218153 PMID:2145107 RGD:7829781 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Il10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16540374 PMID:20404924 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Il18 interleukin 18 treatment ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16879623 PMID:10768930 RGD:8655909 NCBI chr 8:59,802,072...59,829,275 JBrowse link
G Il2 interleukin 2 ISO RGD PMID:6224858 RGD:8693326 NCBI chr 2:121,932,968...121,937,672 JBrowse link
G Il21 interleukin 21 exacerbates ISO protein:increased expression:popliteal lymph node (mouse) RGD PMID:22429963 RGD:127285547 NCBI chr 2:120,117,105...120,127,012 JBrowse link
G Il27 interleukin 27 exacerbates ISO RGD PMID:25466588 RGD:126790552 NCBI chr 1:181,173,108...181,178,720 JBrowse link
G Il4 interleukin 4 treatment ISO protein:increased expression:serum RGD PMID:2145107 PMID:2521244 RGD:7829781, RGD:7829820 NCBI chr10:38,272,003...38,277,549 JBrowse link
G Il6 interleukin 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16540374 NCBI chr 4:5,889,999...5,894,575 JBrowse link
G Itgb2 integrin subunit beta 2 ameliorates ISO RGD PMID:14502280 RGD:127285813 NCBI chr20:11,061,009...11,097,242 JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:26670606 NCBI chr 2:185,884,840...185,912,532 JBrowse link
G Slc6a4 solute carrier family 6 member 4 ISO lupoid leishmaniasis;protein:increased expression:skin of body (human) RGD PMID:23989888 RGD:36947873 NCBI chr10:62,322,688...62,357,060 JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16540374 NCBI chr20:3,626,685...3,629,303 JBrowse link
G Tnfrsf18 TNF receptor superfamily member 18 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20139272 NCBI chr 5:171,901,734...171,904,578 JBrowse link
G Tnfsf4 TNF superfamily member 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:10637281 NCBI chr13:76,256,654...76,280,133 JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 severity ISO RGD PMID:24453980 RGD:126925972 NCBI chr 9:20,259,227...20,276,879 JBrowse link
G Vdr vitamin D receptor ISO RGD PMID:17551101 RGD:8158083 NCBI chr 7:130,864,764...130,916,757 JBrowse link
Lyme disease term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl20 C-C motif chemokine ligand 20 ISO protein:increased expression:synovial fluid RGD PMID:23371320 RGD:7488895 NCBI chr 9:91,837,139...91,839,736 JBrowse link
G Cxcr2 C-X-C motif chemokine receptor 2 severity ISO RGD PMID:12847259 RGD:7257681 NCBI chr 9:75,729,493...75,735,868 JBrowse link
G Mir146a microRNA 146a exacerbates ISO RGD PMID:24967703 RGD:126925141 NCBI chr10:28,349,996...28,350,090 JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO RGD PMID:21387014 RGD:5508754 NCBI chr19:34,555,832...34,596,281 JBrowse link
G Plaur plasminogen activator, urokinase receptor ISO mRNA:increased expression:skin RGD PMID:19461880 PMID:19461880 RGD:6483813, RGD:6483813 NCBI chr 1:89,181,363...89,196,308 JBrowse link
Lyme Neuroborreliosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl2 C-C motif chemokine ligand 2 ISO protein:increased expression:serum (human) RGD PMID:16358960 RGD:11528571 NCBI chr10:67,503,077...67,504,875 JBrowse link
G Cd40 CD40 molecule ISO protein:increased expression:cerebrospinal fluid (human) RGD PMID:16463218 RGD:11352252 NCBI chr 3:174,209,113...174,224,592 JBrowse link
G Cd40lg CD40 ligand ISO protein:increased expression:cerebrospinal fluid (human) RGD PMID:16463218 RGD:11352252 NCBI chr  X:140,164,341...140,176,057 JBrowse link
G Il1b interleukin 1 beta IDA RGD PMID:23134838 RGD:7193053 NCBI chr 3:137,030,200...137,036,581 JBrowse link
malaria term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A treatment
susceptibility
ISO DNA:SNP: :c3435C>T(human)
DNA:hypermethylation:promoter
DNA:SNPs,haplotype: :rs2032582, rs1128503 (human)
DNA:haplotype: :1236C>T, 2677G>T,3435C>T (human)
RGD PMID:28934955 PMID:19331170 PMID:28422980 PMID:17015054 RGD:39456120, RGD:39457680, RGD:39457679, RGD:39456123 NCBI chr 4:26,312,403...26,488,456 JBrowse link
G Ace angiotensin I converting enzyme severity ISO RGD PMID:31234939 RGD:39939120 NCBI chr10:91,410,129...91,430,246 JBrowse link
G Ackr1 atypical chemokine receptor 1 ISO ClinVar Annotator: match by term: Plasmodium vivax, resistance to
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
PMID:7663520 PMID:8547665 PMID:8651934 PMID:10570183 PMID:10791881 More... NCBI chr13:85,782,396...85,784,015 JBrowse link
G Aicda activation-induced cytidine deaminase ISO protein:increased expression: B cell RGD PMID:27980783 RGD:30310233 NCBI chr 4:157,446,120...157,455,958 JBrowse link
G Ank1 ankyrin 1 ISS OMIM:609148 | OMIM:611162 MouseDO NCBI chr16:68,876,294...69,054,963 JBrowse link
G Apoe apolipoprotein E ISO DNA:missense mutations:cds:p.C112R, p.C158R (human) RGD PMID:24116184 RGD:11039486 NCBI chr 1:88,481,889...88,485,816 JBrowse link
G Aqp4 aquaporin 4 ISS OMIM:609148 | OMIM:611162 MouseDO NCBI chr18:6,782,389...6,799,034 JBrowse link
G Cbs cystathionine beta synthase susceptibility ISO DNA:insertion:cds: (844ins68) (human) RGD PMID:27198213 RGD:40903062 NCBI chr20:9,708,089...9,732,623 JBrowse link
G Cd163 CD163 molecule exacerbates
severity
ISO protein:increased expression:blood plasma (human)
protein:altered expression:blood plasma (human)
RGD PMID:22290142 PMID:18632918 RGD:127285797, RGD:149735529 NCBI chr 4:157,085,080...157,118,470 JBrowse link
G Cd1d1 CD1d1 molecule ameliorates
exacerbates
ISO RGD PMID:12938235 PMID:24703850 RGD:127345117, RGD:127345121 NCBI chr 2:172,423,582...172,427,089 JBrowse link
G Cd36 CD36 molecule ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Malaria, cerebral, susceptibility to | ClinVar Annotator: match by term: Malaria, susceptibility to
CTD
OMIM
ClinVar
PMID:10890433 PMID:18305138 PMID:19403559 PMID:25741868 PMID:28960434 More... NCBI chr 4:18,209,088...18,302,142 JBrowse link
G Cd40 CD40 molecule severity ISO RGD PMID:11485931 RGD:11352239 NCBI chr 3:174,209,113...174,224,592 JBrowse link
G Cd40lg CD40 ligand severity ISO RGD PMID:11485931 RGD:11352239 NCBI chr  X:140,164,341...140,176,057 JBrowse link
G Cish cytokine inducible SH2-containing protein susceptibility ISO ClinVar Annotator: match by term: Malaria, susceptibility to
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
PMID:20484391 NCBI chr 8:116,850,969...116,855,917 JBrowse link
G Crp C-reactive protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:8730300 NCBI chr13:87,694,062...87,695,978 JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 treatment
disease_progression
ISO RGD PMID:28892065 PMID:28892065 RGD:38455986, RGD:38455986 NCBI chr 9:69,812,859...69,819,959 JBrowse link
G Ephb2 Eph receptor B2 ISO mRNA:increased expression:liver RGD PMID:25784101 RGD:127285023 NCBI chr 5:154,179,065...154,360,459 JBrowse link
G Ephb3 Eph receptor B3 IEP RGD PMID:25784101 RGD:127285023 NCBI chr11:93,345,098...93,363,775 JBrowse link
G Ephb6 Eph receptor B6 ISO RGD PMID:25784101 RGD:127285023 NCBI chr 4:71,458,632...71,473,889 JBrowse link
G Fcgr2a Fc gamma receptor 2A susceptibility ISO DNA:missense mutation:cds:p.H131R (human)
ClinVar Annotator: match by term: Malaria, severe, susceptibility to
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
RGD
PMID:8636449 PMID:9843982 PMID:10675363 PMID:15367919 PMID:19915573 More... RGD:5147921 NCBI chr13:85,813,516...85,830,269 JBrowse link
G Fcgr2b Fc gamma receptor 2B susceptibility ISO
ISS
ClinVar Annotator: match by term: Malaria, resistance to
CTD Direct Evidence: marker/mechanism
ClinVar
OMIM
MouseDO
CTD
PMID:12115230 PMID:15459183 PMID:16115811 PMID:16170323 PMID:17435165 More... NCBI chr13:85,725,897...85,740,517 JBrowse link
G Foxp3 forkhead box P3 disease_progression ISO RGD PMID:19338000 PMID:16169501 RGD:38455985, RGD:38455992 NCBI chr  X:17,580,380...17,601,181 JBrowse link
G G6pd glucose-6-phosphate dehydrogenase susceptibility
severity
ISO DNA:SNPs: :multiple
ClinVar Annotator: match by term: Malaria, susceptibility to
CTD Direct Evidence: marker/mechanism
DNA:point mutation:cds:c.968T>C (human)
ClinVar
CTD
OMIM
RGD
PMID:5448 PMID:16832 PMID:511159 PMID:736032 PMID:853376 More... RGD:10449111, RGD:10449115 NCBI chr  X:157,352,364...157,372,144 JBrowse link
G Gypa glycophorin A ISO CTD Direct Evidence: marker/mechanism OMIM
CTD
NCBI chr19:27,450,304...27,465,940 JBrowse link
G Gypc glycophorin C ISO ClinVar Annotator: match by term: GYPC-related condition | ClinVar Annotator: match by term: Malaria, resistance to
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:1991173 PMID:5011657 PMID:8157284 PMID:11719395 PMID:12469115 More... NCBI chr18:24,434,921...24,467,592 JBrowse link
G Hbb hemoglobin subunit beta resistance ISO ClinVar Annotator: match by term: CR1-related condition | ClinVar Annotator: match by term: Malaria, resistance to | ClinVar Annotator: match by term: Malaria, susceptibility to
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
RGD
PMID:14973 PMID:81926 PMID:88735 PMID:893136 PMID:909565 More... RGD:1600894 NCBI chr 1:167,662,310...167,663,721 JBrowse link
G Hmox1 heme oxygenase 1 ISS OMIM:609148 | OMIM:611162 MouseDO NCBI chr19:13,452,365...13,479,823 JBrowse link
G Hp haptoglobin ISO CTD Direct Evidence: marker/mechanism CTD PMID:8730300 PMID:16597321 NCBI chr19:54,449,151...54,453,701 JBrowse link
G Icam1 intercellular adhesion molecule 1 susceptibility ISO
ISS
ClinVar Annotator: match by term: ICAM1-related condition | ClinVar Annotator: match by term: Malaria, cerebral, susceptibility to | ClinVar Annotator: match by term: Malaria, susceptibility to
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
MouseDO
CTD
PMID:9259284 PMID:9861406 PMID:10417733 PMID:10699175 PMID:23609612 More... NCBI chr 8:27,829,688...27,841,618 JBrowse link
G Ifng interferon gamma ISS OMIM:609148 | OMIM:611162 MouseDO NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma ISO ClinVar Annotator: match by term: Malaria, susceptibility to ClinVar PMID:1945893 PMID:3198117 PMID:6805883 PMID:7803800 PMID:8244337 More... NCBI chr  X:157,358,279...157,397,563 JBrowse link
G Il1rl1 interleukin 1 receptor-like 1 ISO RGD PMID:28359899 RGD:39938859 NCBI chr 9:42,661,694...42,727,266 JBrowse link
G Il21 interleukin 21 exacerbates ISO RGD PMID:25763578 RGD:127285358 NCBI chr 2:120,117,105...120,127,012 JBrowse link
G Il27 interleukin 27 ameliorates ISO RGD PMID:24522137 PMID:26968425 RGD:126790512, RGD:11530371 NCBI chr 1:181,173,108...181,178,720 JBrowse link
G Il33 interleukin 33 ISO protein:increased expression:serum: RGD PMID:28359899 RGD:39938859 NCBI chr 1:227,701,964...227,736,374 JBrowse link
G Kir3dl1 killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 1 severity ISO DNA:deletion:cds RGD PMID:21889618 RGD:38676475 NCBI chr 1:69,715,529...69,754,050 JBrowse link
G Ltbr lymphotoxin beta receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:15788153 NCBI chr 4:158,108,884...158,115,339 JBrowse link
G Mapkapk3 MAPK activated protein kinase 3 ISO ClinVar Annotator: match by term: Malaria, susceptibility to ClinVar PMID:20484391 NCBI chr 8:116,808,429...116,842,228 JBrowse link
G Mir122 microRNA 122 treatment ISO RGD PMID:28123381 RGD:35673288 NCBI chr18:61,028,817...61,028,901 JBrowse link
G Mir142 microRNA 142 treatment ISO RGD PMID:28123381 RGD:35673288 NCBI chr10:72,557,864...72,557,950 JBrowse link
G Mirlet7a1 microRNA let-7a-1 treatment ISO RGD PMID:28123381 RGD:35673288 NCBI chr17:16,320,133...16,320,226 JBrowse link
G Mirlet7c1 microRNA let-7c-1 treatment ISO RGD PMID:28123381 RGD:35673288 NCBI chr11:16,201,163...16,201,256 JBrowse link
G Mki67 marker of proliferation Ki-67 ISO associated with Lung Neoplasms RGD PMID:21931708 RGD:6483517 NCBI chr 1:199,926,150...199,952,847 JBrowse link
G Ncr3 natural cytotoxicity triggering receptor 3 susceptibility ISO ClinVar Annotator: match by term: Malaria, severe, susceptibility to | ClinVar Annotator: match by term: NCR3-related condition
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
PMID:17208487 NCBI chr20:3,637,242...3,643,748 JBrowse link
G Nos2 nitric oxide synthase 2 ISO ClinVar Annotator: match by term: Malaria, resistance to | ClinVar Annotator: match by term: Malaria, severe, resistance to | ClinVar Annotator: match by term: Malaria, susceptibility to | ClinVar Annotator: match by term: NOS2-related condition
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:9457101 PMID:12433515 PMID:25741868 PMID:28492532 PMID:31995689 NCBI chr10:64,313,335...64,349,221 JBrowse link
G Pklr pyruvate kinase L/R susceptibility ISO
ISS
DNA:mutations, haplotype:multiple (human)
OMIM:609148 | OMIM:611162
DNA:missense mutation:cds:p.I90N (mouse)
MouseDO
RGD
PMID:20377593 PMID:14595440 RGD:11535999, RGD:11537407 NCBI chr 2:176,840,779...176,849,637 JBrowse link
G Prf1 perforin 1 ISO RGD PMID:21525386 RGD:6482803 NCBI chr20:29,246,202...29,251,712 JBrowse link
G Procr protein C receptor disease_progression ISO RGD PMID:27671831 RGD:126848795 NCBI chr 3:144,254,596...144,258,863 JBrowse link
G Scn8a sodium voltage-gated channel alpha subunit 8 ISO ClinVar Annotator: match by term: Malaria, susceptibility to ClinVar PMID:25741868 NCBI chr 7:133,860,901...134,034,809 JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO DNA:SNP::g.80G>A (human) RGD PMID:27198213 RGD:40903062 NCBI chr20:11,584,410...11,602,429 JBrowse link
G Slc4a1 solute carrier family 4 member 1 (Diego blood group) ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Malaria, cerebral, resistance to | ClinVar Annotator: match by term: Malaria, susceptibility to
CTD
ClinVar
PMID:1378323 PMID:1722314 PMID:1737855 PMID:2146504 PMID:6338046 More... NCBI chr10:87,807,010...87,823,274 JBrowse link
G Spp1 secreted phosphoprotein 1 ISO RGD PMID:16552072 RGD:1581333 NCBI chr14:5,613,569...5,620,695 JBrowse link
G Tbx21 T-box transcription factor 21 ISO RGD PMID:19338000 RGD:38455985 NCBI chr10:82,578,751...82,595,253 JBrowse link
G Tirap TIR domain containing adaptor protein ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Malaria, resistance to
CTD
OMIM
ClinVar
PMID:16991088 PMID:17322885 PMID:18305471 PMID:25741868 NCBI chr 8:41,789,557...41,805,903 JBrowse link
G Tnf tumor necrosis factor susceptibility ISO DNA:polymorphism:promoter:-376G>A
ClinVar Annotator: match by term: Malaria, cerebral, susceptibility to
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
RGD
PMID:8056188 PMID:9818939 PMID:10369255 PMID:10450718 PMID:11261930 More... RGD:1624967 NCBI chr20:3,626,685...3,629,303 JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 severity ISO DNA:SNP: :rs2234237A>T (human) RGD PMID:27671831 RGD:126848795 NCBI chr 9:20,259,227...20,276,879 JBrowse link
G Tslp thymic stromal lymphopoietin ISO mRNA:altered expression:multiple (mouse) RGD PMID:28955823 RGD:38596344 NCBI chr18:24,723,990...24,728,419 JBrowse link
Malarial Anemia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcgr3a Fc gamma receptor 3A severity
susceptibility
ISO DNA:polymorphism: :p.F176V (human) RGD PMID:20231419 PMID:23045477 RGD:11040771, RGD:11344971 NCBI chr13:85,782,636...85,792,656 JBrowse link
G Slc4a1 solute carrier family 4 member 1 (Diego blood group) severity ISO DNA:snp:promoter:g.-5699T>C (human) RGD PMID:16960783 RGD:10450507 NCBI chr10:87,807,010...87,823,274 JBrowse link
G Tlr9 toll-like receptor 9 susceptibility ISO DNA:SNP:promoter:g.-1237T>C (rs5743836) (human) RGD PMID:23045477 RGD:11344971 NCBI chr 8:115,743,407...115,747,523 JBrowse link
mucocutaneous leishmaniasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma ISO CTD Direct Evidence: therapeutic CTD PMID:7854095 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Lta lymphotoxin alpha ISO DNA:polymorphism:intron RGD PMID:7595196 RGD:8548799 NCBI chr20:3,622,291...3,625,852 JBrowse link
G Tnf tumor necrosis factor ISO DNA:SNP:promoter:-308G>A (human) RGD PMID:7595196 RGD:8548799 NCBI chr20:3,626,685...3,629,303 JBrowse link
Ocular Toxoplasmosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 ISO RGD PMID:22740770 RGD:7421536 NCBI chr 1:227,287,713...227,306,739 JBrowse link
G Il10 interleukin 10 ISO RGD PMID:19026704 RGD:7365028 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Il17a interleukin 17A treatment ISO protein:increased expression:aqueous humor (human) RGD PMID:22927448 PMID:22927448 RGD:8698652, RGD:8698652 NCBI chr 9:30,640,844...30,644,331 JBrowse link
G Il27 interleukin 27 disease_progression ISO mRNA:increased expression:eye, cervical lymph node (mouse) RGD PMID:29779048 RGD:126790500 NCBI chr 1:181,173,108...181,178,720 JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 susceptibility ISO DNA:snp:3' utr:g.*397A>C (rs3135499)(human) RGD PMID:23100559 RGD:8547527 NCBI chr19:34,555,832...34,596,281 JBrowse link
Plasmodium falciparum malaria term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase susceptibility ISO DNA:SNPs,haplotype:multiple RGD PMID:18003641 RGD:39938831 NCBI chr 3:10,162,087...10,182,835 JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 ISO protein:decreased activity:plasma (human) RGD PMID:20062916 RGD:10449041 NCBI chr 3:10,299,264...10,338,464 JBrowse link
G Bsg basigin ISO CTD Direct Evidence: therapeutic CTD PMID:22080952 PMID:26195724 NCBI chr 7:10,643,788...10,651,005 JBrowse link
G Cast calpastatin ISO protein:alter localization:erythrocyte RGD PMID:17359359 RGD:5509812 NCBI chr 2:5,707,633...5,817,213 JBrowse link
G Ccl4 C-C motif chemokine ligand 4 ISO mRNA, protein:increased expression:blood, RGD PMID:15972509 RGD:5683898 NCBI chr10:68,963,893...68,965,728 JBrowse link
G Clec11a C-type lectin domain containing 11A ISO CTD Direct Evidence: marker/mechanism CTD PMID:19884328 NCBI chr 1:94,800,456...94,809,002 JBrowse link
G Cyp2c6 cytochrome P450, family 2, subfamily C, polypeptide 6 treatment ISO DNA:polymorphisms:: RGD PMID:10471063 RGD:124713538 NCBI chr 1:247,879,058...247,916,804 JBrowse link
G Fas Fas cell surface death receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21625619 NCBI chr 1:241,212,155...241,245,774 JBrowse link
G Fcgr2a Fc gamma receptor 2A severity ISO DNA:missense mutation:cds:p.R131H (rs1801274) (human) RGD PMID:18194515 RGD:5147927 NCBI chr13:85,813,516...85,830,269 JBrowse link
G G6pd glucose-6-phosphate dehydrogenase severity ISO DNA:missense mutation:cds:202G>A (p.V68M) (human) RGD PMID:24943486 RGD:10449113 NCBI chr  X:157,352,364...157,372,144 JBrowse link
G Gstp1 glutathione S-transferase pi 1 severity ISO RGD PMID:19635899 RGD:10450848 NCBI chr 1:210,767,237...210,770,242 JBrowse link
G Hbb hemoglobin subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:20305663 NCBI chr 1:167,662,310...167,663,721 JBrowse link
G Hp haptoglobin severity ISO DNA:missense mutation:cds:p.K54E (human) RGD PMID:24478401 RGD:11041793 NCBI chr19:54,449,151...54,453,701 JBrowse link
G Il13 interleukin 13 ISO protein:increased expression:plasma RGD PMID:21985368 RGD:5684362 NCBI chr10:38,290,926...38,293,483 JBrowse link
G Mbl2 mannose binding lectin 2 susceptibility ISO DNA:haplotype:exon: RGD PMID:18396436 RGD:11530064 NCBI chr 1:237,429,873...237,465,567 JBrowse link
G RT1-Bb RT1 class II, locus Bb susceptibility ISO DNA:polymorphism:cds:HLA-DQB1*0501 (human) RGD PMID:11076705 RGD:11041780 NCBI chr20:4,598,475...4,604,118 JBrowse link
G Tnf tumor necrosis factor severity ISO protein:increased expression:plasma RGD PMID:1984482 RGD:10450571 NCBI chr20:3,626,685...3,629,303 JBrowse link
Plasmodium vivax malaria term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ackr1 atypical chemokine receptor 1 ISO ClinVar Annotator: match by term: ACKR1-related condition | ClinVar Annotator: match by term: Resistance to Plasmodium vivax infection OMIM
ClinVar
PMID:7663520 PMID:7669660 PMID:7705836 PMID:8547665 PMID:8651934 More... NCBI chr13:85,782,396...85,784,015 JBrowse link
Pregnancy-associated Malaria term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il10 interleukin 10 ISO RGD PMID:24717969 RGD:11041890 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Mir146a microRNA 146a susceptibility ISO miRNA:SNP: (rs2910164) (human) RGD PMID:30642347 RGD:126925184 NCBI chr10:28,349,996...28,350,090 JBrowse link
sleeping sickness term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IEP RGD PMID:25595977 RGD:405650615 NCBI chr 6:110,852,188...110,855,054 JBrowse link
G Hcrt hypocretin neuropeptide precursor IEP RGD PMID:25595977 RGD:405650615 NCBI chr10:86,190,289...86,191,524 JBrowse link
G Nos2 nitric oxide synthase 2 IEP protein:altered activity:brain, peritoneal macrophage RGD PMID:20169057 RGD:4891375 NCBI chr10:64,313,335...64,349,221 JBrowse link
G Pmch pro-melanin-concentrating hormone IEP RGD PMID:25595977 RGD:405650615 NCBI chr 7:22,511,934...22,513,250 JBrowse link
G Tslp thymic stromal lymphopoietin susceptibility ISO protein:increased expression:serum (mouse) RGD PMID:28769924 RGD:38549587 NCBI chr18:24,723,990...24,728,419 JBrowse link
Tick-Borne Diseases term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rapgef3 Rap guanine nucleotide exchange factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24218580 NCBI chr 7:128,875,772...128,898,203 JBrowse link
tick-borne encephalitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd40 CD40 molecule ISO protein:increased expression:cerebrospinal fluid (human) RGD PMID:16463218 RGD:11352252 NCBI chr 3:174,209,113...174,224,592 JBrowse link
G Cd40lg CD40 ligand ISO protein:increased expression:cerebrospinal fluid (human) RGD PMID:16463218 RGD:11352252 NCBI chr  X:140,164,341...140,176,057 JBrowse link
toxoplasmosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator IEP RGD PMID:24812878 RGD:10054127 NCBI chr 1:105,076,472...105,081,906 JBrowse link
G Il27 interleukin 27 susceptibility ISO RGD PMID:31548322 PMID:22981537 RGD:126790501, RGD:126790522 NCBI chr 1:181,173,108...181,178,720 JBrowse link
G Nfkbia NFKB inhibitor alpha exacerbates ISO human gene in a mouse model RGD PMID:12626571 RGD:126925984 NCBI chr 6:78,593,844...78,597,307 JBrowse link
G Ucp2 uncoupling protein 2 susceptibility ISO RGD PMID:11101840 RGD:737759 NCBI chr 1:164,251,373...164,257,742 JBrowse link
trypanosomiasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A2m alpha-2-macroglobulin IEP RGD PMID:17722867 RGD:10046041 NCBI chr 4:154,897,770...154,947,787 JBrowse link
G Ada adenosine deaminase IEP RGD PMID:20809996 RGD:5128861 NCBI chr 3:152,398,745...152,422,854 JBrowse link
G Bche butyrylcholinesterase IEP protein:decreased expression:plasma RGD PMID:20138875 RGD:5687328 NCBI chr 2:160,607,289...160,699,760 JBrowse link
G Cd1d1 CD1d1 molecule exacerbates ISO RGD PMID:15731095 RGD:127345115 NCBI chr 2:172,423,582...172,427,089 JBrowse link
G Hp haptoglobin ISO protein:increased expression:plasma RGD PMID:19567273 RGD:11041867 NCBI chr19:54,449,151...54,453,701 JBrowse link
G Il4 interleukin 4 treatment IEP RGD PMID:24731531 RGD:10402804 NCBI chr10:38,272,003...38,277,549 JBrowse link
G Prf1 perforin 1 ISO RGD PMID:19651871 RGD:6482814 NCBI chr20:29,246,202...29,251,712 JBrowse link
G Tlr9 toll-like receptor 9 ISO mRNA:increased expression:liver (mouse) RGD PMID:18565585 RGD:18337478 NCBI chr 8:115,743,407...115,747,523 JBrowse link
visceral leishmaniasis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO mRNA:altered expression:Bcell,CD4Tcell RGD PMID:31001826 RGD:32716386 NCBI chr 4:157,446,120...157,455,958 JBrowse link
G Ccl4 C-C motif chemokine ligand 4 ISO protein:increased expression:serum RGD PMID:21991751 RGD:5683905 NCBI chr10:68,963,893...68,965,728 JBrowse link
G Ccr2 C-C motif chemokine receptor 2 ISO associated with Malnutrition;mRNA:increased expression:lymph node,spleen: RGD PMID:24818662 RGD:8661728 NCBI chr 8:132,611,883...132,619,106 JBrowse link
G Ccr3 C-C motif chemokine receptor 3 ISO protein:increased expression:blood, T cell RGD PMID:15379987 RGD:6893393 NCBI chr 8:123,586,100...123,634,178 JBrowse link
G Ccr5 C-C motif chemokine receptor 5 treatment ISO RGD PMID:24617012 RGD:14401738 NCBI chr 8:132,629,097...132,660,980 JBrowse link
G Cd163 CD163 molecule exacerbates ISO protein:increased expression:blood serum (human) RGD PMID:28355218 RGD:127345133 NCBI chr 4:157,085,080...157,118,470 JBrowse link
G Cd40 CD40 molecule treatment ISO RGD PMID:14573667 RGD:8547750 NCBI chr 3:174,209,113...174,224,592 JBrowse link
G Cd40lg CD40 ligand ISO RGD PMID:14573667 RGD:8547750 NCBI chr  X:140,164,341...140,176,057 JBrowse link
G Crp C-reactive protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:10467834 NCBI chr13:87,694,062...87,695,978 JBrowse link
G Csf2 colony stimulating factor 2 treatment ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:17404324 PMID:8035028 RGD:10449527 NCBI chr10:38,887,692...38,889,673 JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 ISO mRNA:increased expression:liver RGD PMID:16239557 RGD:27095947 NCBI chr14:15,989,066...15,991,263 JBrowse link
G Hmox1 heme oxygenase 1 treatment ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:22461696 PMID:23729024 RGD:42724459 NCBI chr19:13,452,365...13,479,823 JBrowse link
G Ifng interferon gamma treatment ISO CTD Direct Evidence: therapeutic CTD
RGD
PMID:1901333 PMID:7854095 PMID:3104456 PMID:27999013 RGD:8158041, RGD:40890273 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Il10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:15716043 PMID:17404324 PMID:22461696 PMID:29745990 RGD:14975172 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Il10ra interleukin 10 receptor subunit alpha ISO CTD Direct Evidence: therapeutic CTD PMID:15716043 NCBI chr 8:54,459,754...54,474,786 JBrowse link
G Il18 interleukin 18 susceptibility ISO RGD PMID:16879623 RGD:8655922 NCBI chr 8:59,802,072...59,829,275 JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:17404324 NCBI chr 3:137,030,200...137,036,581 JBrowse link
G Il27 interleukin 27 ISO mRNA, protein:increased expression:spleen, liver (mouse) RGD PMID:27245409 RGD:126790520 NCBI chr 1:181,173,108...181,178,720 JBrowse link
G Il2rb interleukin 2 receptor subunit beta susceptibility ISO DNA:polymorphisms:exon:8777, 8838(human) RGD PMID:17108990 RGD:42724466 NCBI chr 7:110,033,341...110,048,054 JBrowse link
G Il6 interleukin 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:7554475 PMID:17404324 PMID:22461696 NCBI chr 4:5,889,999...5,894,575 JBrowse link
G Irf5 interferon regulatory factor 5 ISO protein:increased expression:CD4 T cell, nucleus RGD PMID:32038622 PMID:30067973 RGD:40924560, RGD:40924629 NCBI chr 4:59,092,914...59,104,596 JBrowse link
G Lta lymphotoxin alpha severity ISO DNA:polymorphisms RGD PMID:12438370 PMID:15579454 RGD:8548784, RGD:8548789 NCBI chr20:3,622,291...3,625,852 JBrowse link
G Ltb lymphotoxin beta ISO RGD PMID:12115620 RGD:8548822 NCBI chr20:3,632,209...3,634,054 JBrowse link
G Mbl2 mannose binding lectin 2 disease_progression
susceptibility
ISO protein:increased expression:serum:
DNA:SNPs,haplotype:promoter,exon:
DNA:polymorphism:promoter:
RGD PMID:17357060 PMID:26297290 PMID:26297290 PMID:22995279 PMID:17357060 RGD:8693721, RGD:11522692, RGD:11522692, RGD:8693726, RGD:8693721 NCBI chr 1:237,429,873...237,465,567 JBrowse link
G Mir155 microRNA 155 ISO RGD PMID:31182615 RGD:21081525 NCBI chr11:37,261,114...37,261,178 JBrowse link
G Mir21 microRNA 21 treatment ISO RGD PMID:31608064 RGD:40925951 NCBI chr10:71,902,600...71,902,691 JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 treatment ISO RGD PMID:23729024 RGD:42724459 NCBI chr 3:81,001,529...81,031,165 JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta treatment ISO RGD PMID:27999013 RGD:40890273 NCBI chr 5:165,377,994...165,426,620 JBrowse link
G RT1-Ba RT1 class II, locus Ba susceptibility ISO CTD Direct Evidence: marker/mechanism
DNA:SNP:enhancer: (rs9271858) (human)
CTD
RGD
PMID:23291585 PMID:23291585 RGD:127285406 NCBI chr20:4,575,134...4,579,727 JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23291585 NCBI chr20:4,548,664...4,558,237 JBrowse link
G Slc11a1 solute carrier family 11 member 1 ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16597321 PMID:17067929 RGD:5684944 NCBI chr 9:75,957,193...75,968,115 JBrowse link
G Stat4 signal transducer and activator of transcription 4 ISO RGD PMID:24242758 RGD:8661696 NCBI chr 9:49,472,660...49,588,540 JBrowse link
G Tlr2 toll-like receptor 2 disease_progression ISO RGD PMID:23589575 RGD:15090808 NCBI chr 2:171,499,189...171,504,831 JBrowse link
G Tnf tumor necrosis factor severity ISO DNA:polymorphisms
CTD Direct Evidence: marker/mechanism
CTD
RGD
PMID:1901333 PMID:22461696 PMID:12438370 PMID:15579454 RGD:8548784, RGD:8548789 NCBI chr20:3,626,685...3,629,303 JBrowse link

Term paths to the root
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  disease 19139
    disease by infectious agent 2254
      parasitic infectious disease 329
        parasitic protozoa infectious disease 177
          Central Nervous System Protozoal Infections + 15
          Ciliophora Infections + 0
          Euglenozoa Infections + 86
          Protozoan Infections, Animal + 19
          Tick-Borne Diseases + 16
          amebiasis + 13
          coccidiosis + 38
          dientamoebiasis 0
          giardiasis 0
          leishmaniasis + 65
          malaria + 81
          parasitic Ichthyosporea infectious disease + 0
          trichomoniasis + 0
          trypanosomiasis + 29
paths to the root