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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of tumor necrosis factor superfamily cytokine production
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Accession:GO:1903555 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of tumor necrosis factor superfamily cytokine production.
Synonyms:exact_synonym: regulation of TNFSF cytokine production
 related_synonym: regulation of TNF superfamily production


show annotations for term's descendants           Sort by:
negative regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2180086 (PMID:11168643)		 Ensembl
RGD		 PMID:11168643 GO_REF:0000107 NCBI chr 8:20,663,984...20,670,604
Ensembl chr 8:20,663,985...20,667,929 		JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISO
ISS		 (PMID:10961870)
GO_REF:0000024		 RGD
UniProt		 PMID:10961870 GO_REF:0000024 NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G Adrb2 adrenoceptor beta 2 ISO RGD PMID:11096136 RGD:8548521 NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512 		JBrowse link
G Akap8 A-kinase anchoring protein 8 involved_in ISO (MGI:5763364|PMID:19531803) RGD PMID:19531803 MGI:5763364 NCBI chr 7:11,316,224...11,332,523
Ensembl chr 7:11,316,228...11,332,399 		JBrowse link
G Arg2 arginase 2 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5908771|PMID:27074721)
(PMID:28614294)		 Ensembl
RGD		 PMID:27074721 PMID:28614294 GO_REF:0000107 MGI:5908771 NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378 		JBrowse link
G Arrb2 arrestin, beta 2 involved_in ISO
IEA		 (MGI:3662828|PMID:16378096)
GO_REF:0000107		 RGD
Ensembl		 PMID:16378096 GO_REF:0000107 MGI:3662828 NCBI chr10:55,146,887...55,154,854
Ensembl chr10:55,146,818...55,154,850 		JBrowse link
G Axl Axl receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:107670 (PMID:16831897) RGD PMID:16831897 NCBI chr 1:81,265,088...81,296,278
Ensembl chr 1:81,265,088...81,296,265 		JBrowse link
G Bcl3 BCL3, transcription coactivator acts_upstream_of_or_within ISO (PMID:15465827) RGD PMID:15465827 NCBI chr 1:79,471,368...79,485,908
Ensembl chr 1:79,471,369...79,485,607 		JBrowse link
G Bpi bactericidal/permeability-increasing protein involved_in ISO
IBA		 (PMID:8409400)
GO_REF:0000033		 RGD
GO_Central		 PMID:8409400 GO_REF:0000033 NCBI chr 3:146,909,626...146,936,487
Ensembl chr 3:146,909,629...146,936,221 		JBrowse link
G C5ar2 complement C5a receptor 2 involved_in ISO
ISS		 (PMID:16204243)
GO_REF:0000024		 RGD
UniProt		 PMID:16204243 GO_REF:0000024 NCBI chr 1:76,930,381...76,945,432
Ensembl chr 1:76,930,383...76,959,517 		JBrowse link
G Cactin cactin, spliceosome C complex subunit involved_in ISO (PMID:20829348) RGD PMID:20829348 NCBI chr 7:8,391,396...8,397,219
Ensembl chr 7:8,391,397...8,396,829 		JBrowse link
G Cd24 CD24 molecule involved_in ISO (MGI:5913663|PMID:19264983) RGD PMID:19264983 MGI:5913663 NCBI chr20:47,074,353...47,079,662
Ensembl chr20:47,073,512...47,079,662 		JBrowse link
G Cd33 CD33 molecule involved_in ISO (PMID:15597323) RGD PMID:15597323 NCBI chr 1:93,935,418...93,940,452
Ensembl chr 1:93,930,971...93,950,149 		JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1888407 (PMID:12508119), (PMID:16785311)		 Ensembl
RGD		 PMID:12508119 PMID:16785311 GO_REF:0000107 NCBI chr 1:116,711,559...116,837,269
Ensembl chr 1:116,714,711...116,837,240 		JBrowse link
G Cidea cell death-inducing DFFA-like effector a involved_in ISO (PMID:15919794) RGD PMID:15919794 NCBI chr18:60,894,917...60,920,485
Ensembl chr18:60,894,874...60,920,481 		JBrowse link
G Clec4a C-type lectin domain family 4, member A involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:156,340,439...156,434,212
Ensembl chr 4:156,414,688...156,432,402 		JBrowse link
G Clec4a3 C-type lectin domain family 4, member A3 involved_in ISO (PMID:18258799) RGD PMID:18258799 NCBI chr 4:156,214,030...156,224,818
Ensembl chr 4:156,214,718...156,224,817 		JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 involved_in ISO (PMID:10652441) RGD PMID:10652441 NCBI chr19:10,227,337...10,237,826
Ensembl chr19:10,227,340...10,236,833 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Elf4 E74 like ETS transcription factor 4 involved_in ISO (PMID:35266071)
(MGI:7341386|PMID:35266071)		 RGD PMID:35266071 MGI:7341386 NCBI chr  X:127,587,401...127,639,063
Ensembl chr  X:127,590,650...127,630,200 		JBrowse link
G Errfi1 ERBB receptor feedback inhibitor 1 IMP RGD PMID:19204184 RGD:9685562 NCBI chr 5:161,323,981...161,337,289
Ensembl chr 5:161,323,998...161,337,282 		JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:3628823 (PMID:20457904) RGD PMID:20457904 NCBI chr12:7,623,930...7,699,474
Ensembl chr12:7,623,930...7,699,474 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within ISO MGI:3696705 (PMID:16275384) RGD PMID:16275384 NCBI chr  X:14,908,494...14,924,994
Ensembl chr  X:14,908,494...14,923,838 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:3573966|PMID:15548538)		 UniProt
Ensembl
RGD		 PMID:15548538 GO_REF:0000024 GO_REF:0000107 MGI:3573966 NCBI chr 2:116,884,167...116,937,590
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO
ISS		 (PMID:19657094), (PMID:20103767)
GO_REF:0000024		 RGD
UniProt		 PMID:19657094 PMID:20103767 GO_REF:0000024 NCBI chr16:76,045,430...76,075,904
Ensembl chr16:76,045,426...76,075,904 		JBrowse link
G Ghrl ghrelin and obestatin prepropeptide involved_in IDA
ISS
ISO		 GO_REF:0000024
(PMID:15232612)		 UniProt
RGD		 PMID:15232612 PMID:19620309 GO_REF:0000024, RGD:12905041 NCBI chr 4:146,865,712...146,869,621
Ensembl chr 4:146,865,712...146,869,621 		JBrowse link
G Ghsr growth hormone secretagogue receptor involved_in IMP
ISS
ISO		 GO_REF:0000024
(PMID:15232612)		 UniProt
RGD		 PMID:15232612 PMID:17911350 GO_REF:0000024, RGD:12907501 NCBI chr 2:110,268,489...110,271,865
Ensembl chr 2:110,268,489...110,271,865 		JBrowse link
G Gpnmb glycoprotein nmb involved_in ISO (MGI:3836695|PMID:17475886) RGD PMID:17475886 MGI:3836695 NCBI chr 4:78,010,247...78,031,491
Ensembl chr 4:78,010,197...78,049,367 		JBrowse link
G Gpr18 G protein-coupled receptor 18 acts_upstream_of_or_within ISO MGI:5708707 (PMID:25348153) RGD PMID:25348153 NCBI chr15:98,997,427...99,001,177
Ensembl chr15:98,997,259...99,001,470 		JBrowse link
G Gstp1 glutathione S-transferase pi 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5009376|PMID:18962899), (MGI:5009411|PMID:16023107)
(PMID:18962899)		 BHF-UCL
RGD		 PMID:16023107 PMID:18962899 GO_REF:0000024 MGI:5009376 MGI:5009411 NCBI chr 1:201,337,762...201,340,230
Ensembl chr 1:201,321,672...201,340,226 		JBrowse link
G H19 H19 imprinted maternally expressed transcript IMP RGD PMID:27796346 RGD:156430325 NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134 		JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 involved_in ISO UniProtKB:O00182 (PMID:25578313) RGD PMID:25578313 NCBI chr10:30,882,484...30,914,018
Ensembl chr10:30,882,606...30,909,137 		JBrowse link
G Hdac3 histone deacetylase 3 IMP RGD PMID:22772764 RGD:9590127 NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856 		JBrowse link
G Hsf1 heat shock transcription factor 1 acts_upstream_of_or_within ISO MGI:2155444 (PMID:10545106) RGD PMID:10545106 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011 		JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA		 RNAcentral:URS000034B6F5_9606 (PMID:27277332)
GO_REF:0000107		 RGD
Ensembl		 PMID:27277332 GO_REF:0000107 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Il10 interleukin 10 acts_upstream_of_or_within IDA
ISO		 MGI:1857199 (PMID:12452830) RGD PMID:12452830 PMID:17017555 RGD:1598631 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313 		JBrowse link
G Il27ra interleukin 27 receptor subunit alpha involved_in ISO UniProtKB:P35951 (MGI:5581894|PMID:22927332) RGD PMID:22927332 MGI:5581894 NCBI chr19:24,109,963...24,121,977
Ensembl chr19:24,109,972...24,121,938 		JBrowse link
G Il4 interleukin 4 involved_in ISO (MGI:6304699|PMID:29061364) RGD PMID:29061364 MGI:6304699 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in ISO (PMID:29802199) RGD PMID:29802199 NCBI chr20:5,809,931...5,876,197
Ensembl chr20:5,809,936...5,876,012 		JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 involved_in ISO
IBA		 (PMID:15728517)
GO_REF:0000033
(MGI:2183694|PMID:12150927)		 RGD
GO_Central		 PMID:12150927 PMID:15728517 GO_REF:0000033 MGI:2183694 NCBI chr 7:55,653,949...55,714,371
Ensembl chr 7:55,653,962...55,713,121 		JBrowse link
G Lbp lipopolysaccharide binding protein involved_in ISO
IEA		 (PMID:11739189)
GO_REF:0000107		 RGD
Ensembl		 PMID:11739189 GO_REF:0000107 NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586 		JBrowse link
G Lgals9 galectin 9 involved_in ISO UniProtKB:Q8TDQ0 (PMID:25578313) RGD PMID:25578313 NCBI chr10:63,907,018...63,930,224
Ensembl chr10:63,907,018...63,930,045 		JBrowse link
G Lilrb4 leukocyte immunoglobulin like receptor B4 involved_in ISO (PMID:19833736) RGD PMID:19833736 NCBI chr 1:69,805,020...69,810,628
Ensembl chr 1:69,805,250...69,810,660 		JBrowse link
G Mc1r melanocortin 1 receptor involved_in ISO (PMID:10233018) RGD PMID:10233018 NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192 		JBrowse link
G Mir101-2 microRNA 101-2 acts_upstream_of ISO (PMID:26022377) RGD PMID:26022377 NCBI chr 1:226,860,371...226,860,467
Ensembl chr 1:226,860,371...226,860,467 		JBrowse link
G Mir101a microRNA 101a acts_upstream_of ISO (PMID:26022377) RGD PMID:26022377 NCBI chr 5:115,966,332...115,966,406
Ensembl chr 5:115,966,328...115,966,410 		JBrowse link
G Mir105 microRNA 105 acts_upstream_of ISO (PMID:19509287) RGD PMID:19509287 NCBI chr  X:150,438,529...150,438,601
Ensembl chr  X:150,438,529...150,438,601 		JBrowse link
G Mir125b1 microRNA 125b-1 involved_in ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 8:41,952,966...41,953,052
Ensembl chr 8:41,952,966...41,953,052 		JBrowse link
G Mir125b2 microRNA 125b-2 involved_in ISO (PMID:26435691) RGD PMID:26435691 NCBI chr11:16,245,620...16,245,707 JBrowse link
G Mir130a microRNA 130a involved_in ISO (PMID:26435691) RGD PMID:26435691 NCBI chr 3:69,822,542...69,822,629
Ensembl chr 3:69,822,542...69,822,629 		JBrowse link
G Mir140 microRNA 140 acts_upstream_of ISO
IMP		 (PMID:30321456) RGD PMID:30321456 PMID:32519270 PMID:31376096 RGD:329347827, RGD:329337378 NCBI chr19:35,465,577...35,465,675
Ensembl chr19:35,465,577...35,465,675 		JBrowse link
G Mir154 microRNA 154 IMP RGD PMID:31746418 RGD:152995474 NCBI chr 6:128,752,947...128,753,030
Ensembl chr 6:128,752,947...128,753,030 		JBrowse link
G Mir181a2 microRNA 181a-2 involved_in ISO (PMID:23516523) RGD PMID:23516523 NCBI chr 3:22,615,845...22,615,961
Ensembl chr 3:22,615,845...22,615,961 		JBrowse link
G Mir185 microRNA 185 acts_upstream_of ISO (PMID:24803541) RGD PMID:24803541 NCBI chr11:82,664,716...82,664,795
Ensembl chr11:82,664,716...82,664,795 		JBrowse link
G Mir204 microRNA 204 acts_upstream_of ISO (PMID:29441883) RGD PMID:29441883 NCBI chr 1:220,316,931...220,317,040
Ensembl chr 1:220,316,931...220,317,040 		JBrowse link
G Mir488 microRNA 488 involved_in ISO (PMID:28915828) RGD PMID:28915828 NCBI chr13:70,683,064...70,683,142
Ensembl chr13:70,683,064...70,683,142 		JBrowse link
G Mir494 microRNA 494 IDA RGD PMID:30783439 RGD:150527846 NCBI chr 6:128,728,710...128,728,792
Ensembl chr 6:128,728,709...128,728,793 		JBrowse link
G Mir708 microRNA 708 acts_upstream_of ISO (PMID:31599428) RGD PMID:31599428 NCBI chr 1:150,599,876...150,599,963
Ensembl chr 1:150,599,876...150,599,963 		JBrowse link
G Mir98 microRNA 98 acts_upstream_of ISO (PMID:31886314) RGD PMID:31886314 NCBI chr  X:20,981,235...20,981,342
Ensembl chr  X:20,981,235...20,981,342 		JBrowse link
G Nfkbil1 NFKB inhibitor like 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20829348)		 UniProt
RGD		 PMID:20829348 GO_REF:0000024 NCBI chr20:3,589,974...3,608,348
Ensembl chr20:3,590,642...3,605,616 		JBrowse link
G Nlrc3 NLR family, CARD domain containing 3 involved_in ISO (PMID:22863753)
(MGI:5437524|PMID:22863753)		 RGD PMID:22863753 MGI:5437524 NCBI chr10:11,551,378...11,585,027
Ensembl chr10:11,551,356...11,584,398 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (PMID:19139201) RGD PMID:19139201 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in ISO
IEA		 (PMID:21242261)
GO_REF:0000107
(MGI:5707586|PMID:18972444)		 RGD
Ensembl		 PMID:18972444 PMID:21242261 GO_REF:0000107 MGI:5707586 NCBI chr 7:23,846,122...23,942,085
Ensembl chr 7:23,846,122...23,942,047 		JBrowse link
G Orm1 orosomucoid 1 involved_in ISO (PMID:23973664) RGD PMID:23973664 NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154 		JBrowse link
G Pomc proopiomelanocortin involved_in ISO
IEA		 (PMID:10233018)
GO_REF:0000107		 RGD
Ensembl		 PMID:10233018 GO_REF:0000107 NCBI chr 6:26,939,844...26,945,666
Ensembl chr 6:26,939,837...26,945,664 		JBrowse link
G Ptger4 prostaglandin E receptor 4 IMP RGD PMID:15560120 RGD:10043380 NCBI chr 2:54,330,563...54,347,451
Ensembl chr 2:54,335,424...54,346,670 		JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 involved_in ISO (PMID:23991106)
(MGI:5640942|PMID:23991106)		 RGD PMID:23991106 MGI:5640942 NCBI chr 2:191,366,761...191,414,782
Ensembl chr 2:191,366,808...191,414,779 		JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:P97797 (MGI:3760575|PMID:17954568)		 Ensembl
RGD		 PMID:17954568 GO_REF:0000107 MGI:3760575 NCBI chr 4:157,526,034...157,550,783
Ensembl chr 4:157,526,035...157,550,984 		JBrowse link
G Rad21 RAD21 cohesin complex component IMP RGD PMID:36538854 RGD:243065265 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817 		JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO (PMID:18416830) RGD PMID:18416830 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Selenos selenoprotein S involved_in IEA
ISO		 GO_REF:0000107
(MGI:3773781|PMID:16227999)		 Ensembl
RGD		 PMID:16227999 GO_REF:0000107 MGI:3773781 NCBI chr 1:119,659,779...119,669,546
Ensembl chr 1:119,659,751...119,669,833 		JBrowse link
G Sirpa signal-regulatory protein alpha involved_in ISO (MGI:3760575|PMID:17954568) RGD PMID:17954568 MGI:3760575 NCBI chr 3:116,819,730...116,858,099
Ensembl chr 3:116,819,726...116,858,098 		JBrowse link
G Sirt1 sirtuin 1 IMP RGD PMID:19299582 RGD:9585771 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Slamf1 signaling lymphocytic activation molecule family member 1 involved_in ISO (PMID:16317102) RGD PMID:16317102 NCBI chr13:84,270,316...84,305,497
Ensembl chr13:84,270,316...84,305,497 		JBrowse link
G Syt11 synaptotagmin 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:5468041|PMID:23303671), (MGI:5780534|PMID:25063865), (MGI:5913303|PMID:28686317)		 UniProt
Ensembl
RGD		 PMID:23303671 PMID:25063865 PMID:28686317 GO_REF:0000024 GO_REF:0000107 MGI:5468041 MGI:5780534 MGI:5913303 NCBI chr 2:174,206,032...174,232,540
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
G Tlr4 toll-like receptor 4 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4421230|PMID:20051628)		 Ensembl
RGD		 PMID:20051628 GO_REF:0000107 MGI:4421230 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
G Tlr6 toll-like receptor 6 involved_in ISO ComplexPortal:CPX-1134 (MGI:5307186|PMID:22198949) RGD PMID:22198949 MGI:5307186 NCBI chr14:43,362,164...43,374,500
Ensembl chr14:43,362,164...43,375,685 		JBrowse link
G Tnfaip3 TNF alpha induced protein 3 involved_in ISO (MGI:4946158|PMID:21088135) RGD PMID:21088135 MGI:4946158 NCBI chr 1:13,709,211...13,724,291
Ensembl chr 1:13,709,206...13,725,282 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:6294162|PMID:28592261) RGD PMID:28592261 MGI:6294162 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
G Trim27 tripartite motif-containing 27 involved_in ISO (PMID:22128329) RGD PMID:22128329 NCBI chr17:43,538,282...43,550,633
Ensembl chr17:43,538,285...43,550,643 		JBrowse link
G Tspo translocator protein IDA RGD PMID:14678758 RGD:2317158 NCBI chr 7:114,720,188...114,730,450
Ensembl chr 7:114,720,188...114,730,450 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:104685 (PMID:16831897) RGD PMID:16831897 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412|MGI:98872 (PMID:16831897) RGD PMID:16831897 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222 		JBrowse link
G Vsir V-set immunoregulatory receptor involved_in ISO (PMID:24691993) RGD PMID:24691993 NCBI chr20:28,281,582...28,307,262
Ensembl chr20:28,281,596...28,303,878 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO		 GO_REF:0000024
(MGI:5142149|PMID:21616078)
(PMID:18178554)		 UniProt
RGD		 PMID:18178554 PMID:21616078 GO_REF:0000024 MGI:5142149 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
negative regulation of tumor necrosis factor superfamily cytokine production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 molecule involved_in ISO (PMID:24187568) RGD PMID:24187568 NCBI chr 1:227,116,674...227,137,379
Ensembl chr 1:227,116,649...227,134,450 		JBrowse link
positive regulation of lymphotoxin A production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il17f interleukin 17F involved_in ISO
IEA		 (PMID:11591732)
GO_REF:0000107		 RGD
Ensembl		 PMID:11591732 GO_REF:0000107 NCBI chr 9:23,190,094...23,201,482
Ensembl chr 9:23,190,100...23,201,482 		JBrowse link
positive regulation of TRAIL production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-A2 RT1 class Ia, locus A2 involved_in ISO (PMID:25631937) RGD PMID:25631937 NCBI chr20:4,870,939...4,910,183 JBrowse link
G Tnfrsf8 TNF receptor superfamily member 8 involved_in ISO (PMID:16108830) RGD PMID:16108830 NCBI chr 5:157,123,183...157,168,421
Ensembl chr 5:157,123,185...157,168,421 		JBrowse link
positive regulation of tumor necrosis factor (ligand) superfamily member 11 production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 involved_in ISO (MGI:5009349|PMID:20683884) RGD PMID:20683884 MGI:5009349 NCBI chr 1:194,776,559...194,789,330
Ensembl chr 1:194,770,060...194,788,801 		JBrowse link
G Ccn1 cellular communication network factor 1 IMP RGD PMID:27653023 RGD:150429754 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:16220542) RGD PMID:16220542 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375 		JBrowse link
positive regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc8 ATP binding cassette subfamily C member 8 IMP RGD PMID:18854840 RGD:2325137 NCBI chr 1:96,598,568...96,679,563
Ensembl chr 1:96,598,647...96,679,510 		JBrowse link
G Adam17 ADAM metallopeptidase domain 17 involved_in ISO (PMID:12777399) RGD PMID:12777399 NCBI chr 6:40,872,936...40,920,700
Ensembl chr 6:40,872,856...40,920,639 		JBrowse link
G Ager advanced glycosylation end product-specific receptor involved_in ISO
IEA		 UniProtKB:P05067 (MGI:5424311|PMID:22406537)
GO_REF:0000107		 RGD
Ensembl		 PMID:22406537 GO_REF:0000107 MGI:5424311 NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078 		JBrowse link
G Akap12 A-kinase anchoring protein 12 IMP RGD PMID:19937403 PMID:17873284 RGD:14348968, RGD:14348969 NCBI chr 1:40,730,123...40,819,863
Ensembl chr 1:40,730,123...40,819,886 		JBrowse link
G App amyloid beta precursor protein involved_in ISO
IEA		 UniProtKB:P49768|UniProtKB:Q62151|UniProtKB:Q9QUN7 (PMID:22198949), (PMID:22406537), (PMID:29061364)
UniProtKB:Q62151 (MGI:6271381|PMID:12808450)
UniProtKB:Q62151 (PMID:12808450)
GO_REF:0000107		 RGD
Ensembl		 PMID:12808450 PMID:22198949 PMID:22406537 PMID:29061364 GO_REF:0000107 MGI:6271381 NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17276987)		 UniProt
RGD		 PMID:17276987 GO_REF:0000024 NCBI chr 3:155,547,504...155,633,652
Ensembl chr 3:155,547,538...155,630,856 		JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21887730)		 UniProt
Ensembl
RGD		 PMID:21887730 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:174,061,126...174,118,355
Ensembl chr 2:174,062,976...174,118,355 		JBrowse link
G Arid5a AT-rich interaction domain 5A involved_in ISO (MGI:5887181|PMID:27671645) RGD PMID:27671645 MGI:5887181 NCBI chr 9:38,534,612...38,549,467
Ensembl chr 9:38,534,590...38,547,597 		JBrowse link
G Btk Bruton tyrosine kinase IMP RGD PMID:28352114 RGD:151665126 NCBI chr  X:97,722,796...97,762,315
Ensembl chr  X:97,722,802...97,761,853 		JBrowse link
G C1qtnf4 C1q and TNF related 4 involved_in ISO (PMID:21658842) RGD PMID:21658842 NCBI chr 3:76,854,368...76,872,991
Ensembl chr 3:76,857,735...76,874,139 		JBrowse link
G Card9 caspase recruitment domain family, member 9 acts_upstream_of_or_within ISO MGI:3698412 (PMID:17187069) RGD PMID:17187069 NCBI chr 3:9,171,814...9,180,310
Ensembl chr 3:9,171,815...9,180,237 		JBrowse link
G Ccl19 C-C motif chemokine ligand 19 involved_in ISO (MGI:3576832|PMID:15845453) RGD PMID:15845453 MGI:3576832 NCBI chr 5:56,963,364...56,965,308
Ensembl chr 5:56,963,364...56,965,308 		JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IMP RGD PMID:24826069 RGD:8661667 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226 		JBrowse link
G Ccl3 C-C motif chemokine ligand 3 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:P22893 (MGI:5301204|PMID:21784977)		 UniProt
RGD		 PMID:21784977 GO_REF:0000024 MGI:5301204 NCBI chr10:68,451,388...68,452,938
Ensembl chr10:68,451,388...68,452,938 		JBrowse link
G Ccl4 C-C motif chemokine ligand 4 IMP RGD PMID:10679105 RGD:68880 NCBI chr10:68,466,394...68,468,229
Ensembl chr10:68,452,052...68,468,231 		JBrowse link
G Ccn1 cellular communication network factor 1 IMP RGD PMID:27653023 RGD:150429754 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Ccr2 C-C motif chemokine receptor 2 involved_in IMP
ISO
ISS		 (MGI:3814510|PMID:18832716)
GO_REF:0000024		 RGD
BHF-UCL		 PMID:18832716 PMID:24826069 GO_REF:0000024 MGI:3814510, RGD:8661667 NCBI chr 8:123,734,465...123,742,483
Ensembl chr 8:123,734,430...123,742,100 		JBrowse link
G Ccr5 C-C motif chemokine receptor 5 IMP RGD PMID:16790532 RGD:1598562 NCBI chr 8:123,752,423...123,757,538
Ensembl chr 8:123,752,325...123,759,260 		JBrowse link
G Cd14 CD14 molecule involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
(PMID:8612135)
(PMID:12594207)
(MGI:80217|PMID:8612135)		 UniProt
RGD		 PMID:8612135 PMID:12594207 GO_REF:0000024 MGI:80217 NCBI chr18:28,335,522...28,337,383
Ensembl chr18:28,335,340...28,337,261 		JBrowse link
G Cd2 Cd2 molecule involved_in ISO (PMID:19109405) RGD PMID:19109405 NCBI chr 2:188,710,895...188,724,044
Ensembl chr 2:188,710,900...188,724,026 		JBrowse link
G Cd36 CD36 molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2447190|MGI:3573941 (PMID:15690042), (PMID:16061696)		 Ensembl
RGD		 PMID:15690042 PMID:16061696 GO_REF:0000107 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Cd84 CD84 molecule involved_in ISO
IBA		 (MGI:5700297|PMID:20628063)
GO_REF:0000033		 RGD
GO_Central		 PMID:20628063 GO_REF:0000033 MGI:5700297 NCBI chr13:84,327,580...84,367,153
Ensembl chr13:84,327,553...84,362,076 		JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr12:1,915,902...1,924,529
Ensembl chr12:1,915,919...1,924,539 		JBrowse link
G Clec7a C-type lectin domain containing 7A involved_in
acts_upstream_of_or_within		 ISO (PMID:19358895)
(PMID:12719478), (PMID:14707091)
(MGI:3844414|PMID:19136564)		 RGD PMID:12719478 PMID:14707091 PMID:19136564 PMID:19358895 MGI:3844414 NCBI chr 4:162,902,731...162,913,931
Ensembl chr 4:162,902,732...162,913,897 		JBrowse link
G Clu clusterin involved_in ISO
ISS
IEA		 (PMID:15857407)
GO_REF:0000024
GO_REF:0000107		 RGD
Alzheimers_University_of_Toronto
Ensembl		 PMID:15857407 GO_REF:0000024 GO_REF:0000107 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315 		JBrowse link
G Csf1r colony stimulating factor 1 receptor IMP RGD PMID:18434589 RGD:151665814 NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415 		JBrowse link
G Cyba cytochrome b-245 alpha chain involved_in ISO
IEA		 (PMID:22423966)
GO_REF:0000107		 RGD
Ensembl		 PMID:22423966 GO_REF:0000107 NCBI chr19:50,487,598...50,495,669
Ensembl chr19:50,487,597...50,495,721 		JBrowse link
G Cybb cytochrome b-245 beta chain IMP RGD PMID:19318376 RGD:11040691 NCBI chr  X:13,358,101...13,392,570
Ensembl chr  X:13,359,430...13,392,586 		JBrowse link
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 IMP RGD PMID:25840911 PMID:29656108 RGD:12904676, RGD:150520032 NCBI chr 5:111,179,981...111,207,490
Ensembl chr 5:111,178,703...111,244,794 		JBrowse link
G Ddt D-dopachrome tautomerase involved_in ISO (PMID:21817065) RGD PMID:21817065 NCBI chr20:12,884,216...12,886,687
Ensembl chr20:12,884,243...12,888,482 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:20696886), (PMID:21957149) RGD PMID:20696886 PMID:21957149 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO (PMID:24803541) RGD PMID:24803541 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Fadd Fas associated via death domain involved_in ISO (PMID:16127453) RGD PMID:16127453 NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653 		JBrowse link
G Fcer1g Fc epsilon receptor Ig acts_upstream_of_or_within ISO MGI:1857165|MGI:2384004 (PMID:10229794), (PMID:14764707) RGD PMID:10229794 PMID:14764707 NCBI chr13:83,649,447...83,654,248
Ensembl chr13:83,649,449...83,671,443 		JBrowse link
G Fcgr2a Fc gamma receptor 2A involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1861924 (PMID:10229794)		 GO_Central
RGD		 PMID:10229794 GO_REF:0000033 NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Fcgr2al1 Fc gamma receptor 2A like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:83,302,874...83,315,744
Ensembl chr13:83,280,790...83,484,920 		JBrowse link
G Fcgr2b Fc gamma receptor 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:83,191,253...83,207,778
Ensembl chr13:83,193,163...83,207,778 		JBrowse link
G Fcgr3a Fc gamma receptor 3A involved_in ISO (PMID:10728755) RGD PMID:10728755 NCBI chr13:83,249,905...83,259,921
Ensembl chr13:83,249,872...83,259,921 		JBrowse link
G Frmd8 FERM domain containing 8 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29897333), (PMID:29897336)		 UniProt
RGD		 PMID:29897333 PMID:29897336 GO_REF:0000024 NCBI chr 1:203,143,216...203,163,868
Ensembl chr 1:203,143,218...203,163,870 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IEA
ISO		 GO_REF:0000107
ComplexPortal:CPX-1134|UniProtKB:P22725 (MGI:5291547|PMID:21857966)		 Ensembl
RGD		 PMID:21857966 GO_REF:0000107 MGI:5291547 NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 involved_in ISO (PMID:18006747)
(MGI:3763563|PMID:18006747)		 RGD PMID:18006747 MGI:3763563 NCBI chr10:30,882,484...30,914,018
Ensembl chr10:30,882,606...30,909,137 		JBrowse link
G Hdac1 histone deacetylase 1 IMP RGD PMID:22772764 RGD:9590127 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 IMP RGD PMID:22772764 RGD:9590127 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in IMP
ISO
IDA		 (MGI:4367121|PMID:19890330), (MGI:5913663|PMID:19264983)
PMID:10952726
(PMID:12765338)		 RGD PMID:12765338 PMID:19264983 PMID:19890330 PMID:22514737 PMID:10952726 MGI:4367121 MGI:5913663, RGD:10402175, RGD:10054071 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hspb1 heat shock protein family B (small) member 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5050077|PMID:12385642)		 Ensembl
RGD		 PMID:12385642 GO_REF:0000107 MGI:5050077 NCBI chr12:20,794,014...20,795,675
Ensembl chr12:20,794,028...20,795,743 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IMP RGD PMID:23447644 RGD:10402845 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662 		JBrowse link
G Ifih1 interferon induced with helicase C domain 1 involved_in ISO (PMID:21957149) RGD PMID:21957149 NCBI chr 3:47,228,980...47,275,403
Ensembl chr 3:47,227,364...47,275,456 		JBrowse link
G Ifng interferon gamma involved_in ISO ComplexPortal:CPX-1062|UniProtKB:P05067|UniProtKB:P15261|UniProtKB:P49768 (MGI:3697769|PMID:17255335), (MGI:4942276|PMID:2502420), (MGI:4943415|PMID:1845803), (MGI:5776417|PMID:26227742), (MGI:6304699|PMID:29061364), (MGI:6305053|PMID:7715705) RGD PMID:1845803 PMID:2502420 PMID:7715705 PMID:17255335 PMID:26227742 More... MGI:3697769 MGI:4942276 MGI:4943415 MGI:5776417 MGI:6304699 MGI:6305053 NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375 		JBrowse link
G Ifngr1 interferon gamma receptor 1 involved_in ISO UniProtKB:P01579 (MGI:3697769|PMID:17255335) RGD PMID:17255335 MGI:3697769 NCBI chr 1:14,333,167...14,351,799
Ensembl chr 1:14,333,187...14,351,785 		JBrowse link
G Il12b interleukin 12B involved_in ISO (PMID:16751425) RGD PMID:16751425 NCBI chr10:28,888,832...28,903,802
Ensembl chr10:28,893,008...28,902,903 		JBrowse link
G Il17a interleukin 17A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:29734196)		 Ensembl
RGD		 PMID:29734196 GO_REF:0000107 NCBI chr 9:23,144,402...23,147,889
Ensembl chr 9:23,144,402...23,147,889 		JBrowse link
G Il18 interleukin 18 IMP RGD PMID:17623049 RGD:4889480 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887 		JBrowse link
G Il1a interleukin 1 alpha acts_upstream_of IMP PMID:31172560 ARUK-UCL PMID:31172560 RGD:15023467 NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822 		JBrowse link
G Il23a interleukin 23 subunit alpha involved_in ISO (PMID:16751425) RGD PMID:16751425 NCBI chr 7:721,809...723,923
Ensembl chr 7:721,809...723,923 		JBrowse link
G Il33 interleukin 33 involved_in
acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:6414704|PMID:26936882)		 Ensembl
RGD		 PMID:26936882 GO_REF:0000107 MGI:6414704 NCBI chr 1:227,701,964...227,736,374
Ensembl chr 1:227,721,435...227,736,373 		JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:31886314) RGD PMID:31886314 NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in ISO
IEA		 (MGI:5437583|PMID:22727192)
GO_REF:0000107		 RGD
Ensembl		 PMID:22727192 GO_REF:0000107 MGI:5437583 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Jak2 Janus kinase 2 involved_in ISO UniProtKB:P01580 (MGI:5009182|PMID:12426001), (MGI:5776417|PMID:26227742) RGD PMID:12426001 PMID:26227742 MGI:5009182 MGI:5776417 NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189 		JBrowse link
G Lbp lipopolysaccharide binding protein involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 GO_REF:0000024
MGI:1857975 (PMID:12055258)
GO_REF:0000107
(PMID:12594207)
(PMID:24120359), (PMID:8409400)
(MGI:1097829|PMID:9338787), (MGI:3807766|PMID:12932360), (MGI:5645195|PMID:24380872)		 UniProt
RGD
Ensembl		 PMID:8409400 PMID:9338787 PMID:12055258 PMID:12594207 PMID:12932360 More... GO_REF:0000024 GO_REF:0000107 MGI:1097829 MGI:3807766 MGI:5645195 NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586 		JBrowse link
G Lep leptin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3690675|PMID:9438411)		 UniProt
RGD		 PMID:9438411 GO_REF:0000024 MGI:3690675 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Lgals9 galectin 9 involved_in ISO (PMID:20209097)
(MGI:5645190|PMID:25158758)		 RGD PMID:20209097 PMID:25158758 MGI:5645190 NCBI chr10:63,907,018...63,930,224
Ensembl chr10:63,907,018...63,930,045 		JBrowse link
G Lilra5 leukocyte immunoglobulin like receptor A5 involved_in ISO (PMID:12393390), (PMID:19009525) RGD PMID:12393390 PMID:19009525 NCBI chr 1:69,973,292...69,978,750
Ensembl chr 1:69,973,292...70,001,718 		JBrowse link
G LOC134481532 low affinity immunoglobulin gamma Fc region receptor III involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Lpl lipoprotein lipase involved_in ISO
IEA		 RNAcentral:URS00005C83FD_10090 (MGI:6282927|PMID:22963823)
GO_REF:0000107		 RGD
Ensembl		 PMID:22963823 GO_REF:0000107 MGI:6282927 NCBI chr16:20,830,055...20,853,855
Ensembl chr16:20,829,465...20,855,249 		JBrowse link
G Lrrfip2 LRR binding FLII interacting protein 2 acts_upstream_of_or_within ISO (PMID:19265123) RGD PMID:19265123 NCBI chr 8:111,091,453...111,193,947
Ensembl chr 8:111,091,503...111,193,255 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP RGD PMID:22302802 RGD:13462052 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Ly96 lymphocyte antigen 96 involved_in ISO (MGI:5645195|PMID:24380872) RGD PMID:24380872 MGI:5645195 NCBI chr 5:2,582,233...2,612,357
Ensembl chr 5:2,582,254...2,612,386 		JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 acts_upstream_of_or_within ISO (PMID:24020373) RGD PMID:24020373 NCBI chr13:42,513,762...42,560,061
Ensembl chr13:42,513,762...42,560,457 		JBrowse link
G Mavs mitochondrial antiviral signaling protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:16127453), (PMID:21957149)		 UniProt
RGD		 PMID:16127453 PMID:21957149 GO_REF:0000024 NCBI chr 3:118,451,650...118,466,094
Ensembl chr 3:118,451,743...118,466,094 		JBrowse link
G Mif macrophage migration inhibitory factor involved_in ISO (PMID:21817065) RGD PMID:21817065 NCBI chr20:12,790,919...12,791,784
Ensembl chr20:12,790,902...12,799,504 		JBrowse link
G Mir144 microRNA 144 involved_in ISO (PMID:24733347) RGD PMID:24733347 NCBI chr10:62,961,348...62,961,430
Ensembl chr10:62,961,348...62,961,430 		JBrowse link
G Mir206 microRNA 206 involved_in ISO (PMID:27277332) RGD PMID:27277332 NCBI chr 9:23,094,249...23,094,332
Ensembl chr 9:23,094,249...23,094,332 		JBrowse link
G Mir23a microRNA 23a IMP RGD PMID:33403590 RGD:155882539 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:20164187) RGD PMID:20164187 NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA
ISO
IMP		 GO_REF:0000107
(PMID:25049354)
(MGI:6201889|PMID:25049354)		 Ensembl
RGD		 PMID:25049354 PMID:25049354 GO_REF:0000107 MGI:6201889, RGD:13792525 NCBI chr 8:4,724,009...4,733,864
Ensembl chr 8:4,724,029...4,733,520 		JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor acts_upstream_of_or_within ISO MGI:2147032|MGI:2385681 (PMID:10607756), (PMID:11067888), (PMID:12719478), (PMID:12872135) RGD PMID:10607756 PMID:11067888 PMID:12719478 PMID:12872135 NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415 		JBrowse link
G Ncl nucleolin IMP RGD PMID:21309751 RGD:9686449 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Nfatc4 nuclear factor of activated T-cells 4 acts_upstream_of_or_within ISO (PMID:17242187) RGD PMID:17242187 NCBI chr15:29,286,998...29,314,610
Ensembl chr15:29,305,535...29,314,610 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 acts_upstream_of_or_within IMP
ISO		 MGI:2429397|MGI:2674231 (PMID:18261938) RGD PMID:18261938 PMID:22450316 RGD:9831170 NCBI chr 4:84,060,871...84,111,668
Ensembl chr 4:84,060,880...84,111,404 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:21040358)
MGI:1341839|MGI:2680581|MGI:3529594 (PMID:15220916), (PMID:18261938)
(PMID:17187069)		 RGD PMID:15220916 PMID:17187069 PMID:18261938 PMID:21040358 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Oas1a 2'-5' oligoadenylate synthetase 1A involved_in ISO (PMID:30822544) RGD PMID:30822544 NCBI chr12:35,669,798...35,680,505
Ensembl chr12:35,669,801...35,680,517 		JBrowse link
G Oas2 2'-5' oligoadenylate synthetase 2 involved_in ISO
IEA		 (PMID:30822544)
GO_REF:0000107		 RGD
Ensembl		 PMID:30822544 GO_REF:0000107 NCBI chr12:35,802,824...35,830,778
Ensembl chr12:35,806,759...35,829,371 		JBrowse link
G Oas3 2'-5'-oligoadenylate synthetase 3 involved_in ISO
IEA		 (PMID:30822544)
GO_REF:0000107		 RGD
Ensembl		 PMID:30822544 GO_REF:0000107 NCBI chr12:35,779,028...35,802,781
Ensembl chr12:35,779,022...35,802,781 		JBrowse link
G Orm1 orosomucoid 1 involved_in ISO (PMID:8774350) RGD PMID:8774350 NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154 		JBrowse link
G Pf4 platelet factor 4 involved_in ISO (PMID:10666185) RGD PMID:10666185 NCBI chr14:17,298,304...17,299,220
Ensembl chr14:17,298,308...17,299,365 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17242187)		 Ensembl
RGD		 PMID:17242187 GO_REF:0000107 NCBI chr 2:32,878,942...32,963,668
Ensembl chr 2:32,882,032...32,963,631 		JBrowse link
G Plcg2 phospholipase C, gamma 2 involved_in IEA
ISO		 GO_REF:0000107
(MGI:3844414|PMID:19136564), (MGI:5300086|PMID:22041900)		 Ensembl
RGD		 PMID:19136564 PMID:22041900 GO_REF:0000107 MGI:3844414 MGI:5300086 NCBI chr19:45,547,416...45,683,930
Ensembl chr19:45,547,416...45,683,930 		JBrowse link
G Psen1 presenilin 1 involved_in ISO UniProtKB:P05067 (PMID:29061364) RGD PMID:29061364 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Ptafr platelet-activating factor receptor IMP RGD PMID:2545780 RGD:10043183 NCBI chr 5:144,765,770...144,795,057
Ensembl chr 5:144,765,976...144,795,251 		JBrowse link
G Pten phosphatase and tensin homolog IMP RGD PMID:30783439 RGD:150527846 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in ISO
IEA		 UniProtKB:P97797 (MGI:3760575|PMID:17954568)
GO_REF:0000107		 RGD
Ensembl		 PMID:17954568 GO_REF:0000107 MGI:3760575 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO UniProtKB:Q64455 (MGI:3774343|PMID:18249142) RGD PMID:18249142 MGI:3774343 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J involved_in ISO UniProtKB:P06800 (MGI:3774343|PMID:18249142) RGD PMID:18249142 MGI:3774343 NCBI chr 3:76,405,917...76,561,842
Ensembl chr 3:76,405,927...76,562,260 		JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO (PMID:16982856), (PMID:21487011) RGD PMID:16982856 PMID:21487011 NCBI chr 1:182,601,657...182,603,013
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 involved_in ISO
IEA		 (PMID:19933860)
GO_REF:0000107		 RGD
Ensembl		 PMID:19933860 GO_REF:0000107 NCBI chr 3:104,168,549...104,230,107
Ensembl chr 3:104,170,013...104,230,056 		JBrowse link
G Rig1 RNA sensor RIG-1 involved_in ISO (PMID:21957149) RGD PMID:21957149 NCBI chr 5:55,321,351...55,369,947
Ensembl chr 5:55,321,235...55,370,819 		JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 involved_in ISO (PMID:16127453) RGD PMID:16127453 NCBI chr17:30,839,639...30,871,824
Ensembl chr17:30,839,650...30,871,824 		JBrowse link
G Ripk2 receptor-interacting serine-threonine kinase 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:5543891|PMID:21887730)
MGI:2660793 (PMID:11894098), (PMID:18261938)		 RGD PMID:11894098 PMID:18261938 PMID:21887730 MGI:5543891 NCBI chr 5:29,630,806...29,662,804
Ensembl chr 5:29,631,570...29,662,657 		JBrowse link
G RT1-A2 RT1 class Ia, locus A2 involved_in ISO (PMID:25631937) RGD PMID:25631937 NCBI chr20:4,870,939...4,910,183 JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of_or_within ISO MGI:3716944 (PMID:16227612) RGD PMID:16227612 NCBI chr  X:127,326,815...127,341,521
Ensembl chr  X:127,326,859...127,341,519 		JBrowse link
G Selenok selenoprotein K involved_in ISO (MGI:4939970|PMID:21220695) RGD PMID:21220695 MGI:4939970 NCBI chr16:5,152,066...5,160,648
Ensembl chr16:5,152,066...5,159,188 		JBrowse link
G Setd4 SET domain containing 4 involved_in ISO (MGI:6694359|PMID:31376731) RGD PMID:31376731 MGI:6694359 NCBI chr11:32,829,509...32,859,162
Ensembl chr11:32,838,063...32,858,243 		JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (MGI:3703830|PMID:17346996) RGD PMID:17346996 MGI:3703830 NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391 		JBrowse link
G Spn sialophorin acts_upstream_of_or_within ISO (PMID:10899905)
MGI:1857246 (PMID:10899905)		 RGD PMID:10899905 NCBI chr 1:181,746,937...181,759,564
Ensembl chr 1:181,746,429...181,759,628 		JBrowse link
G Spon2 spondin 2 acts_upstream_of_or_within ISO MGI:3026870 (PMID:14691481) RGD PMID:14691481 NCBI chr14:77,505,695...77,518,001
Ensembl chr14:77,511,901...77,517,996 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA		 RNAcentral:URS00004E0808_9606|UniProtKB:P05231 (PMID:31886314)
GO_REF:0000107		 RGD
Ensembl		 PMID:31886314 GO_REF:0000107 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Syk spleen associated tyrosine kinase involved_in ISO
IEA		 (PMID:19358895)
GO_REF:0000107		 RGD
Ensembl		 PMID:19358895 GO_REF:0000107 NCBI chr17:12,604,615...12,678,437
Ensembl chr17:12,604,619...12,661,410 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISO (PMID:32141990) RGD PMID:32141990 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Thbs1 thrombospondin 1 involved_in ISO (PMID:18726995) RGD PMID:18726995 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440 		JBrowse link
G Ticam1 TIR domain containing adaptor molecule 1 acts_upstream_of_or_within ISO MGI:108005|MGI:2679794|MGI:3029019 (PMID:12855817), (PMID:12872135) RGD PMID:12855817 PMID:12872135 NCBI chr 9:1,102,559...1,111,023
Ensembl chr 9:1,102,366...1,123,147 		JBrowse link
G Tirap TIR domain containing adaptor protein involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:16301656), (PMID:19509286)
MGI:3573942 (PMID:15690042)
GO_REF:0000033
(MGI:3531416|PMID:12447442), (MGI:3713420|PMID:16301656)		 RGD
GO_Central		 PMID:12447442 PMID:15690042 PMID:16301656 PMID:19509286 GO_REF:0000033 MGI:3531416 MGI:3713420 NCBI chr 8:33,531,724...33,548,508
Ensembl chr 8:33,531,725...33,547,432 		JBrowse link
G Tlr1 toll-like receptor 1 involved_in ISO (MGI:3609367|PMID:12077222) RGD PMID:12077222 MGI:3609367 NCBI chr14:43,384,127...43,396,765
Ensembl chr14:43,384,932...43,397,125 		JBrowse link
G Tlr2 toll-like receptor 2 involved_in
acts_upstream_of_or_within		 ISO ComplexPortal:CPX-1134|UniProtKB:P05067|UniProtKB:P49768 (MGI:4456948|PMID:15356140), (MGI:5307186|PMID:22198949)
MGI:2178675|MGI:2674036 (PMID:10549626), (PMID:11067888), (PMID:12719478), (PMID:15690042), (PMID:16239543)		 RGD PMID:10549626 PMID:11067888 PMID:12719478 PMID:15356140 PMID:15690042 More... MGI:4456948 MGI:5307186 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
G Tlr3 toll-like receptor 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:4456948|PMID:15356140)
MGI:2653138 (PMID:17008311)		 RGD PMID:15356140 PMID:17008311 MGI:4456948 NCBI chr16:46,821,980...46,837,900
Ensembl chr16:46,822,039...46,836,545 		JBrowse link
G Tlr4 toll-like receptor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857718|MGI:1860755|MGI:1860885 (PMID:10549626), (PMID:10607756), (PMID:10623794), (PMID:14691481), (PMID:18261938)
(MGI:4456948|PMID:15356140)
(PMID:17951129), (PMID:30321456)		 Ensembl
RGD		 PMID:10549626 PMID:10607756 PMID:10623794 PMID:14691481 PMID:15356140 More... GO_REF:0000107 MGI:4456948 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
G Tlr9 toll-like receptor 9 involved_in ISO (MGI:3828189|PMID:18931679), (MGI:4456948|PMID:15356140) RGD PMID:15356140 PMID:18931679 MGI:3828189 MGI:4456948 NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796 		JBrowse link
G Tmem106a transmembrane protein 106A involved_in ISS
ISO		 GO_REF:0000024
(MGI:6216178|PMID:26215746)		 UniProt
RGD		 PMID:26215746 GO_REF:0000024 MGI:6216178 NCBI chr10:86,506,908...86,515,915
Ensembl chr10:86,506,936...86,515,892 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A IMP RGD PMID:20967881 RGD:5130945 NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591 		JBrowse link
G Tnfrsf8 TNF receptor superfamily member 8 involved_in ISO (PMID:16108830) RGD PMID:16108830 NCBI chr 5:157,123,183...157,168,421
Ensembl chr 5:157,123,185...157,168,421 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:20007935) RGD PMID:20007935 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
G Tyrobp transmembrane immune signaling adaptor Tyrobp involved_in ISO (MGI:5638298|PMID:25690660) RGD PMID:25690660 MGI:5638298 NCBI chr 1:85,672,931...85,676,856
Ensembl chr 1:85,672,994...85,676,848 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO
IEA		 ComplexPortal:CPX-1134|UniProtKB:Q9EQD0 (MGI:5291547|PMID:21857966)
GO_REF:0000107		 RGD
Ensembl		 PMID:21857966 GO_REF:0000107 MGI:5291547 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zbtb20 zinc finger and BTB domain containing 20 involved_in ISO (MGI:5619432|PMID:23776228) RGD PMID:23776228 MGI:5619432 NCBI chr11:57,052,129...57,791,214
Ensembl chr11:57,072,880...57,510,210 		JBrowse link
regulation of TRAIL production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase NOT|involved_in ISO (PMID:21785459) RGD PMID:21785459 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
regulation of tumor necrosis factor production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt1 angiopoietin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:20060382)		 Ensembl
RGD		 PMID:20060382 GO_REF:0000107 NCBI chr 7:73,528,345...73,783,953
Ensembl chr 7:73,531,486...73,784,067 		JBrowse link
G Card9 caspase recruitment domain family, member 9 acts_upstream_of_or_within ISO MGI:3663486 (PMID:16862125) RGD PMID:16862125 NCBI chr 3:9,171,814...9,180,310
Ensembl chr 3:9,171,815...9,180,237 		JBrowse link
G Cd300ld Cd300 molecule-like family member D acts_upstream_of_or_within ISO (PMID:17543387) RGD PMID:17543387 NCBI chr10:100,082,957...100,115,853
Ensembl chr10:100,083,490...100,115,821 		JBrowse link
G Cd47 Cd47 molecule involved_in ISO (PMID:11509594) RGD PMID:11509594 NCBI chr11:50,906,052...50,970,000
Ensembl chr11:50,906,177...50,969,425 		JBrowse link
G Cx3cr1 C-X3-C motif chemokine receptor 1 involved_in ISO UniProtKB:P05067 (MGI:6162390|PMID:23499256) RGD PMID:23499256 MGI:6162390 NCBI chr 8:119,785,726...119,799,431
Ensembl chr 8:119,782,595...119,800,014 		JBrowse link
G Fcgr2a Fc gamma receptor 2A IMP RGD PMID:22184119 RGD:11041001 NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Foxp1 forkhead box P1 involved_in ISO (PMID:18799727) RGD PMID:18799727 NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258 		JBrowse link
G Kcnn4 potassium calcium-activated channel subfamily N member 4 IMP RGD PMID:25715999 RGD:401794570 NCBI chr 1:79,956,380...79,974,354
Ensembl chr 1:79,959,322...79,974,340 		JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:20345905) RGD PMID:20345905 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795 		JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 involved_in ISO (PMID:15014438)
(MGI:1352048|PMID:10559880)		 RGD PMID:10559880 PMID:15014438 MGI:1352048 NCBI chr13:42,513,762...42,560,061
Ensembl chr13:42,513,762...42,560,457 		JBrowse link
G Mir361 microRNA 361 involved_in ISO (PMID:28444107) RGD PMID:28444107 NCBI chr  X:78,246,206...78,246,275
Ensembl chr  X:78,246,206...78,246,275 		JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor acts_upstream_of_or_within ISO MGI:4421295 (PMID:25084278) RGD PMID:25084278 NCBI chr 8:119,074,439...119,078,508
Ensembl chr 8:119,074,437...119,079,415 		JBrowse link
G Sirpa signal-regulatory protein alpha involved_in IMP
ISO		 PMID:16055727
UniProtKB:Q08722 (PMID:11509594)		 RGD PMID:11509594 PMID:16055727 RGD:13792550 NCBI chr 3:116,819,730...116,858,099
Ensembl chr 3:116,819,726...116,858,098 		JBrowse link
G Tbc1d23 TBC1 domain family, member 23 acts_upstream_of_or_within ISO MGI:3857844 (PMID:22312129) RGD PMID:22312129 NCBI chr11:43,303,355...43,361,507
Ensembl chr11:43,303,355...43,361,503 		JBrowse link
G Tlr4 toll-like receptor 4 IMP RGD PMID:24199847 RGD:12910488 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
G Tlr5 toll-like receptor 5 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr13:94,634,778...94,658,992
Ensembl chr13:94,634,801...94,657,738 		JBrowse link
G Tnfsf18 TNF superfamily member 18 NOT|involved_in ISO (MGI:5551556|PMID:24107315) RGD PMID:24107315 MGI:5551556 NCBI chr13:73,833,478...73,907,249
Ensembl chr13:73,831,252...73,843,169 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (PMID:24218451) RGD PMID:24218451 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G Ube2j1 ubiquitin-conjugating enzyme E2, J1 acts_upstream_of_or_within ISO MGI:109298 (PMID:24020373) RGD PMID:24020373 NCBI chr 5:47,422,476...47,441,476
Ensembl chr 5:47,422,587...47,441,461 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15014438)		 UniProt
RGD		 PMID:15014438 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    multicellular organismal process 8810
      regulation of multicellular organismal process 3339
        regulation of cytokine production 898
          regulation of tumor necrosis factor superfamily cytokine production 219
            negative regulation of tumor necrosis factor superfamily cytokine production + 86
            positive regulation of tumor necrosis factor superfamily cytokine production + 125
            regulation of TRAIL production + 3
            regulation of lymphotoxin A production + 1
            regulation of tumor necrosis factor (ligand) superfamily member 11 production + 3
            regulation of tumor necrosis factor production + 215
Path 2
Term Annotations click to browse term
  biological_process 19692
    biological regulation 13305
      regulation of biological process 12902
        regulation of cellular process 12354
          regulation of cellular metabolic process 5821
            regulation of cellular biosynthetic process 5234
              regulation of macromolecule biosynthetic process 5135
                regulation of gene expression 5020
                  regulation of cytokine production 898
                    regulation of tumor necrosis factor superfamily cytokine production 219
                      negative regulation of tumor necrosis factor superfamily cytokine production + 86
                      positive regulation of tumor necrosis factor superfamily cytokine production + 125
                      regulation of TRAIL production + 3
                      regulation of lymphotoxin A production + 1
                      regulation of tumor necrosis factor (ligand) superfamily member 11 production + 3
                      regulation of tumor necrosis factor production + 215
paths to the root