Mavs (mitochondrial antiviral signaling protein)

Gene: Mavs (mitochondrial antiviral signaling protein) Rattus norvegicus

Analyze

Symbol:

Mavs

Name:

mitochondrial antiviral signaling protein

RGD ID:

1359371

Description:

Predicted to enable several functions, including CARD domain binding activity; RIG-I binding activity; and molecular condensate scaffold activity. Predicted to be involved in several processes, including defense response to other organism; positive regulation of cytokine production; and regulation of defense response. Predicted to act upstream of or within RIG-I signaling pathway and positive regulation of type I interferon production. Predicted to be located in mitochondrion and peroxisomal membrane. Predicted to be active in mitochondrial outer membrane. Orthologous to human MAVS (mitochondrial antiviral signaling protein); PARTICIPATES IN hepatitis C pathway; influenza A pathway; measles pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

interferon beta promoter stimulator protein 1; interferon-beta promoter stimulator protein 1; IPS-1; MGC93707; mitochondrial antiviral-signaling protein; similar to RIKEN cDNA D430028G21; virus-induced signaling adapter; virus-induced signaling adaptor; virus-induced-signaling adapter; Visa

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,904,673 - 138,919,129 (+)	NCBI		GRCr8
mRatBN7.2	3	118,451,650 - 118,466,094 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	118,451,743 - 118,466,094 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	122,346,068 - 122,360,237 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,945,435 - 130,959,618 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	128,602,173 - 128,616,342 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	123,776,147 - 123,790,572 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	123,776,181 - 123,790,567 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	130,273,531 - 130,287,792 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	118,938,433 - 118,953,081 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	118,844,005 - 118,858,653 (+)	NCBI
Celera	3	117,259,863 - 117,274,017 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Huntington's disease-like 1 (ISO)

influenza (ISO)

influenza A (ISO)

Inosine Triphosphatase Deficiency (ISO)

Metapneumovirus infections (ISO)

pantothenate kinase-associated neurodegeneration (ISO)

plague (ISO)

Rotavirus Infections (ISO)

vaccinia (ISO)

West Nile fever (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

beauvericin (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

dextran sulfate (ISO)

dicrotophos (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

folic acid (ISO)

FR900359 (ISO)

glyphosate (ISO)

hydrogen peroxide (ISO)

hydroxychloroquine (ISO)

ivermectin (ISO)

ketamine (EXP)

lipopolysaccharide (ISO)

methamphetamine (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

morphine (EXP)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (ISO,ISS)

antiviral innate immune response (ISO)

cellular response to exogenous dsRNA (ISO,ISS)

cytoplasmic pattern recognition receptor signaling pathway (ISO)

defense response to bacterium (ISO,ISS)

innate immune response (ISO,ISS)

negative regulation of type I interferon-mediated signaling pathway (ISO)

negative regulation of viral genome replication (ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of chemokine (C-C motif) ligand 5 production (ISO)

positive regulation of defense response to virus by host (ISO,ISS)

positive regulation of interferon-alpha production (ISO,ISS)

positive regulation of interferon-beta production (ISO,ISS)

positive regulation of interleukin-6 production (ISO,ISS)

positive regulation of interleukin-8 production (ISO)

positive regulation of IP-10 production (ISO)

positive regulation of myeloid dendritic cell cytokine production (ISO,ISS)

positive regulation of NLRP3 inflammasome complex assembly (ISO)

positive regulation of protein import into nucleus (ISO)

positive regulation of protein phosphorylation (ISO)

positive regulation of response to cytokine stimulus (ISO,ISS)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of tumor necrosis factor production (ISO,ISS)

positive regulation of type I interferon production (ISO)

positive regulation of type I interferon-mediated signaling pathway (ISO)

protein localization to mitochondrion (ISO)

regulation of peroxisome organization (ISO)

RIG-I signaling pathway (ISO)

signal transduction (ISO)

Cellular Component

cytoplasm (ISO)

mitochondrial membrane (ISO)

mitochondrial outer membrane (ISO)

mitochondrion (ISO,ISS)

peroxisomal membrane (ISO)

peroxisome (ISO)

Molecular Function

CARD domain binding (ISO)

identical protein binding (ISO)

molecular adaptor activity (ISO)

molecular condensate scaffold activity (ISO)

protein binding (ISO)

protein kinase binding (ISO)

RIG-I binding (ISO)

signaling adaptor activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

hepatitis C pathway (IEA)

influenza A pathway (IEA)

measles pathway (IEA)

Retinoic acid-inducible gene (RIG) I-like receptor signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Extrinsic MAVS signaling is critical for Treg maintenance of Foxp3 expression following acute flavivirus infection.	Da Costa A, etal., Sci Rep. 2017 Jan 17;7:40720. doi: 10.1038/srep40720.
2.	Mitochondrial antiviral-signalling protein plays an essential role in host immunity against human metapneumovirus.	Deng J, etal., J Gen Virol. 2015 Aug;96(8):2104-2113. doi: 10.1099/vir.0.000178. Epub 2015 May 7.
3.	Rotavirus VP3 targets MAVS for degradation to inhibit type III interferon expression in intestinal epithelial cells.	Ding S, etal., Elife. 2018 Nov 21;7. pii: 39494. doi: 10.7554/eLife.39494.
4.	Transcriptomic response to Yersinia pestis: RIG-I like receptor signaling response is detrimental to the host against plague.	Du Z, etal., J Genet Genomics. 2014 Jul 20;41(7):379-96. doi: 10.1016/j.jgg.2014.05.006. Epub 2014 Jun 3.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Constitutively Active MAVS Inhibits HIV-1 Replication via Type I Interferon Secretion and Induction of HIV-1 Restriction Factors.	Gupta S, etal., PLoS One. 2016 Feb 5;11(2):e0148929. doi: 10.1371/journal.pone.0148929. eCollection 2016.
7.	RIG-I Signaling Is Critical for Efficient Polyfunctional T Cell Responses during Influenza Virus Infection.	Kandasamy M, etal., PLoS Pathog. 2016 Jul 20;12(7):e1005754. doi: 10.1371/journal.ppat.1005754. eCollection 2016 Jul.
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
11.	MAVS O-GlcNAcylation Is Essential for Host Antiviral Immunity against Lethal RNA Viruses.	Song N, etal., Cell Rep. 2019 Aug 27;28(9):2386-2396.e5. doi: 10.1016/j.celrep.2019.07.085.
12.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13.	VISA is an adapter protein required for virus-triggered IFN-beta signaling.	Xu LG, etal., Mol Cell 2005 Sep 16;19(6):727-40.

Additional References at PubMed

PMID:12761501	PMID:15489334	PMID:16127453	PMID:16641100	PMID:18586328	PMID:18614015	PMID:18780793	PMID:18818105	PMID:19609254	PMID:19631370	PMID:20451243	PMID:21703541
PMID:21957149	PMID:22745163

Genomics

Comparative Map Data

Mavs
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,904,673 - 138,919,129 (+)	NCBI		GRCr8
mRatBN7.2	3	118,451,650 - 118,466,094 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	118,451,743 - 118,466,094 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	122,346,068 - 122,360,237 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,945,435 - 130,959,618 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	128,602,173 - 128,616,342 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	123,776,147 - 123,790,572 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	123,776,181 - 123,790,567 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	130,273,531 - 130,287,792 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	118,938,433 - 118,953,081 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	118,844,005 - 118,858,653 (+)	NCBI
Celera	3	117,259,863 - 117,274,017 (+)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

MAVS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	3,846,834 - 3,876,118 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	3,846,799 - 3,876,123 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	3,827,481 - 3,856,765 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	3,775,484 - 3,795,973 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	20	3,889,325 - 3,918,630 (+)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	3,776,247 - 3,805,626 (+)	NCBI		HuRef
CHM1_1	20	3,827,384 - 3,856,773 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	3,877,778 - 3,907,055 (+)	NCBI		T2T-CHM13v2.0

Mavs
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	131,075,445 - 131,089,945 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	131,075,983 - 131,089,945 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	131,234,063 - 131,248,025 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	131,234,063 - 131,248,025 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	131,059,874 - 131,073,761 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	130,925,579 - 130,939,466 (+)	NCBI		MGSCv36	mm8
Celera	2	132,460,494 - 132,474,382 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	63.3	NCBI

Mavs
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	14,695,438 - 14,703,672 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	14,691,918 - 14,704,782 (+)	NCBI	ChiLan1.0	ChiLan1.0

MAVS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	4,809,731 - 4,837,991 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	4,806,483 - 4,834,798 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	3,885,044 - 3,903,554 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	3,659,558 - 3,702,397 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	3,659,559 - 3,701,089 (+)	Ensembl	panpan1.1		panPan2

MAVS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	17,510,209 - 17,529,286 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	17,512,761 - 17,523,807 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	17,342,451 - 17,353,500 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	17,930,606 - 17,947,974 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	17,930,603 - 17,942,617 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	17,526,451 - 17,537,501 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	17,637,457 - 17,648,500 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	17,965,346 - 17,976,396 (-)	NCBI		UU_Cfam_GSD_1.0

Mavs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	166,413,582 - 166,427,872 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	14,842,160 - 14,859,202 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	14,842,778 - 14,859,163 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAVS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	31,850,900 - 31,869,188 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	31,850,646 - 31,869,273 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	36,193,888 - 36,210,273 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MAVS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	34,534,433 - 34,555,406 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	34,541,229 - 34,552,823 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	9,898,086 - 9,918,187 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mavs
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	4,939,040 - 4,954,058 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	4,936,556 - 4,951,081 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mavs
35 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	180
Count of miRNA genes:	115
Interacting mature miRNAs:	125
Transcripts:	ENSRNOT00000034146
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	112287552	135181505	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	3	115638168	135181505	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	115638168	135181505	Rat

Markers in Region

AI502240

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	118,465,695 - 118,465,911 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,790,174 - 123,790,389	NCBI	Rnor6.0
Rnor_5.0	3	130,287,394 - 130,287,609	UniSTS	Rnor5.0
RGSC_v3.4	3	118,952,687 - 118,952,902	UniSTS	RGSC3.4
Celera	3	117,273,623 - 117,273,838	UniSTS
RH 3.4 Map	3	1012.9	UniSTS
Cytogenetic Map	3	q36	UniSTS

RH139303

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	118,452,224 - 118,452,348 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,776,692 - 123,776,815	NCBI	Rnor6.0
Rnor_5.0	3	130,274,059 - 130,274,182	UniSTS	Rnor5.0
RGSC_v3.4	3	118,938,870 - 118,938,993	UniSTS	RGSC3.4
Celera	3	117,260,300 - 117,260,423	UniSTS
RH 3.4 Map	3	1016.3	UniSTS
Cytogenetic Map	3	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	37	39	33	11	33	8	11	28	35	33	11	8
Low		6	18	8	8	8			46		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC110439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000034146 ⟹ ENSRNOP00000033476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	118,458,647 - 118,466,094 (+)	Ensembl
Rnor_6.0 Ensembl	3	123,776,255 - 123,790,567 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090764 ⟹ ENSRNOP00000073053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	118,451,743 - 118,466,094 (+)	Ensembl
Rnor_6.0 Ensembl	3	123,776,181 - 123,789,637 (+)	Ensembl

RefSeq Acc Id:

NM_001005556 ⟹ NP_001005556

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,812 - 138,919,125 (+)	NCBI
mRatBN7.2	3	118,451,788 - 118,466,090 (+)	NCBI
Rnor_6.0	3	123,776,255 - 123,790,568 (+)	NCBI
Rnor_5.0	3	130,273,531 - 130,287,792 (+)	NCBI
RGSC_v3.4	3	118,938,433 - 118,953,081 (+)	RGD
Celera	3	117,259,863 - 117,274,017 (+)	RGD

Sequence:

show sequence

TCGCAGCCTGGGTGTGGGTCCTCAGTGCTCTGTGCTCACTGAGGTTGTTCAGGGAGGGGACCTT
GGTCAGAGCCGAGTGCTCCTAGGATTTCGCAGGAGCGCCCCGGGCCTGGGCGCTCGGTGCCAGA
GAAGATCCTGAACCGGATTAGGGGAGAATGCGGTCTGCCCCATACGGATTCGCGACCCCGGCAG
TTCCTTGAACCGCATCCAGCACCTTTAGCAAGCAGTCCATCTCTCTCAGTCCATCCCACCCACC
CAGGGTTGGAGTCCCTCCAGAAGCTGAGCAGCCATGACATTTGCTGAGGAAAAGACCTATAAGT
ATATCCGCTACAACCACAGCAAGTTTTGCTGTGTTGATGTTCTGGAGATCCTGCCTTACCTGTC
CTGCCTCACAACCAGTGACCAGGATCGATTACGGGCTTCCTACAAGCAACTAGGAAACCAGGGC
ACACTCTGGGAACTCTTCAATACGCTCCAGCGTCGGCCTGGCTGGGTAGAGGTCTTCATCCGGG
CACTGAGGATCTGTGAGCTGCCTGGGCTGGCTGAGCAAGTGACTCGAGTTTATCAGAGCTACCT
GCCTCCTGGGGCCTCACTCCACTCCCTAGACCCATTGCAGTCACCAAGAATTCCTACCACGGTT
TCCGAACCTTCTGCATTTGCAGCAGGCCACACCATCCCTGACAGTGGCTTCCAAGATAAACCAG
GTTACCCTAAGCCTGTCCAGGACACCCAGCCACCAAAGTCCCCAGTAGAGAATTCGGAGGAACC
CCCACAGGCCAACTTTGGGGCCATTCCAAGGATGTCGGGTGACTCTTTGATATCCTCACCTAAC
CCACCGGCCCTCAGCCCTCAGCCCTCCAGAGAGCATCCCGAGCAAGAACCCGAACTGGGGGGCC
CCTCCACAGCAAATGTTGACTCTGTTCCCATAGCAACCTATGGACCTGTGTCTCCAACTGTTTC
CTTCCAGCCCCTTCCACGTATTGCCCCGAGGACAAACCTCTCGCCTGGGGTCACAGTATCAGCT
CTATCTGCCAAGACCACTTTGTCCTCCTCTTCTACTGGATCAGCTTTTGCAAAGGGAGCAGGTG
ACCAGGCCAAGGCTGCCACCTGTGTCAGCACTAAAGAGGGAGTACCTACCAATTCTGTGACTAC
CAGCTCAGTGCCTTCCATCAAACCAGTACCAGTAAATACCATGTCTTCCAAGTTGCCCATCAGT
ACAAAGTCCACTGCTGCAACGCCCTCTACTGTGCCCACTAATATAGCGCCATCAAAATTACCCA
TCAACTCAGTATATACTGGCATAGTGCCATCCAAAGTGACTGCTAGTGTGGCCAAAGCAAGTGC
CAGCACAATGCCACCTGAGAGGAACAACAAGCAAGCCAAGGAGACCCTGGAGGCTCCAGCAACC
GTAGTCACCACTGGAAGCAGCCTGACCAGACCAGATATCAGTTCCAGGAGCTTGCACTCTGGGC
CAGAGTTAAGCAAGCCAGGGGTGCTGGTGTCCCAGGTGGACAACGAGCCATTCTCAGCCTGCTC
TATGGACCTTGCCATCAGCCCTAGCACCTCCTTGGGCTCAGAACCCAACCATGGTCCAGAGGAG
AATGAGTATTCATCCTTTCGAATCCAGGTGGATAAAAGTCCCAGTGTTGATCTGTTAGGAAGCC
CTGAGCCACTAGCCACCCAGCAGTCCCCAGAAGAGGAAGAGCCTTGTGCCAGTTCAGTGTCCTG
GGCTAAGTGGCTGGGGGCCACCAGTGCACTCTTGGCTGCATTCCTGGCAGTGATGCTCTACCGT
AGCAGGCACCTGGCCCAGTGAAGCCTCAGCTGTATGCCACACTCACTTGCTCAGTCCTGCCAAG
CATGCCCTCTAGGCTTGGGGTGGTAGATATGGCGAGGTCCACTGAGTTATCCAGGTACAGGTGC
TACCTGTACTGAGGCGCCATCACTATGTGGTGGGGGAAGAGACACTGCTTCTATCCTGGTTCAT
GTCATCTTCTGGTCTTCAGCTTTTGGGGGCCCTGTATCCCTTCCATTGCTTCTGACCTGCCCAC
AGGGCAGGGTAAGATTGCATGCTATGTGCTCCTAAGGAGGTATCCCCACCAGACTCATCCCTAT
TGGCCCAAGCCTGAAGATGAGGAGGCATTGCACTGTTGACAGTGCCCCTCCTCTCACCCAGGTC
TCCTGAAACACAAGCGTAGAATAGTGATGAGTGGTCCCGTAGCATCCAATGCCTTCCACCAGCA
GCCTGGCTGAGGCCTCGGCAGAGTGCCTGGGAGCAGCAGAGCAGCTGGTCTCTTGGGAGCTTTG
GGTGCTCTGCCCCTTTGGTCCCTCTCCCCAGCCAGACAGCCCTAAGGGTGGGCCTGGAGGTTCT
CTGTGGACTCCAAGAAAGCCAGAAGCAGCTCCCAGGCCTGAGAAAGCCCCTGGGAGCCTTGCTC
CAGCCTCCTTATCCCAGCTCTTCACTTCTCCCCTCCTGGTCTCCATTCTCTTTGACCTCCTACA
CTGGATGATGAGATACCTAGTGGGCAGAGCTCAGGCTGGGCTTGGATCAGTTCCACCCTTTCTC
TGCCTTTAGCAGATGTTTAGCTTCTCTAGTCTTCCTCCCAGTGTGGACAGTGGGTAGCACTTCC
TTTTACTGGGCTCCTCTGAGTTTGAAGGATAGAGATATTTGCCTAGTGCCTATCCCCGAGGGTG
TGAGCACAAGTTCTTGCCGTCCTGCCCAGGCTGGTAGAGCTAAGGTGAGAGCATGAGAGACAGA
GTGCACAGTGGTAATAGCACAGTCTTTGAGAGAGCAGCCTTCGCCTCCATCGTGCTTTTGTCTC
CTCCCTGGTCAGGTGTAGACCTTACCTCTGTGCCTCACTTTTCTCACCTGTGAGATGGGGTGAA
TATGCATATATATGCTAATATATTCTAGTTTTATTGGGATTAATTAAAAGAGTTTATCTGTAAA
AAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235034 ⟹ XP_006235096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,674 - 138,919,129 (+)	NCBI
mRatBN7.2	3	118,451,650 - 118,466,094 (+)	NCBI
Rnor_6.0	3	123,776,147 - 123,790,572 (+)	NCBI
Rnor_5.0	3	130,273,531 - 130,287,792 (+)	NCBI

Sequence:

show sequence

CAATGGCCGCGTGGCTGGCCCCGCCCCACTCCGCCCCTTCATCTGGGAGGGCTCTGCACAGTCG
AACGCGGTCAACCTGTTTCCTAGTCTGGTTTCTTCTTGTCCATCTCTCTCAGTCCATCCCACCC
ACCCAGGGTTGGAGTCCCTCCAGAAGCTGAGCAGCCATGACATTTGCTGAGGAAAAGACCTATA
AGTATATCCGCTACAACCACAGCAAGTTTTGCTGTGTTGATGTTCTGGAGATCCTGCCTTACCT
GTCCTGCCTCACAACCAGTGACCAGGATCGATTACGGGCTTCCTACAAGCAACTAGGAAACCAG
GGCACACTCTGGGAACTCTTCAATACGCTCCAGCGTCGGCCTGGCTGGGTAGAGGTCTTCATCC
GGGCACTGAGGATCTGTGAGCTGCCTGGGCTGGCTGAGCAAGTGACTCGAGTTTATCAGAGCTA
CCTGCCTCCTGGGGCCTCACTCCACTCCCTAGACCCATTGCAGTCACCAAGAATTCCTACCACG
GTTTCCGAACCTTCTGCATTTGCAGCAGGCCACACCATCCCTGACAGTGGCTTCCAAGATAAAC
CAGGTTACCCTAAGCCTGTCCAGGACACCCAGCCACCAAAGTCCCCAGTAGAGAATTCGGAGGA
ACCCCCACAGGCCAACTTTGGGGCCATTCCAAGGATGTCGGGTGACTCTTTGATATCCTCACCT
AACCCACCGGCCCTCAGCCCTCAGCCCTCCAGAGAGCATCCCGAGCAAGAACCCGAACTGGGGG
GCCCCTCCACAGCAAATGTTGACTCTGTTCCCATAGCAACCTATGGACCTGTGTCTCCAACTGT
TTCCTTCCAGCCCCTTCCACGTATTGCCCCGAGGACAAACCTCTCGCCTGGGGTCACAGTATCA
GCTCTATCTGCCAAGACCACTTTGTCCTCCTCTTCTACTGGATCAGCTTTTGCAAAGGGAGCAG
GTGACCAGGCCAAGGCTGCCACCTGTGTCAGCACTAAAGAGGGAGTACCTACCAATTCTGTGAC
TACCAGCTCAGTGCCTTCCATCAAACCAGTACCAGTAAATACCATGTCTTCCAAGTTGCCCATC
AGTACAAAGTCCACTGCTGCAACGCCCTCTACTGTGCCCACTAATATAGCGCCATCAAAATTAC
CCATCAACTCAGTATATACTGGCATAGTGCCATCCAAAGTGACTGCTAGTGTGGCCAAAGCAAG
TGCCAGCACAATGCCACCTGAGAGGAACAACAAGCAAGCCAAGGAGACCCTGGAGGCTCCAGCA
ACCGTAGTCACCACTGGAAGCAGCCTGACCAGACCAGATATCAGTTCCAGGAGCTTGCACTCTG
GGCCAGAGTTAAGCAAGCCAGGGGTGCTGGTGTCCCAGGTGGACAACGAGCCATTCTCAGCCTG
CTCTATGGACCTTGCCATCAGCCCTAGCACCTCCTTGGGCTCAGAACCCAACCATGGTCCAGAG
GAGAATGAGTATTCATCCTTTCGAATCCAGGTGGATAAAAGTCCCAGTGTTGATCTGTTAGGAA
GCCCTGAGCCACTAGCCACCCAGCAGTCCCCAGAAGAGGAAGAGCCTTGTGCCAGTTCAGTGTC
CTGGGCTAAGTGGCTGGGGGCCACCAGTGCACTCTTGGCTGCATTCCTGGCAGTGATGCTCTAC
CGTAGCAGGCACCTGGCCCAGTGAAGCCTCAGCTGTATGCCACACTCACTTGCTCAGTCCTGCC
AAGCATGCCCTCTAGGCTTGGGGTGGTAGATATGGCGAGGTCCACTGAGTTATCCAGGTACAGG
TGCTACCTGTACTGAGGCGCCATCACTATGTGGTGGGGGAAGAGACACTGCTTCTATCCTGGTT
CATGTCATCTTCTGGTCTTCAGCTTTTGGGGGCCCTGTATCCCTTCCATTGCTTCTGACCTGCC
CACAGGGCAGGGTAAGATTGCATGCTATGTGCTCCTAAGGAGGTATCCCCACCAGACTCATCCC
TATTGGCCCAAGCCTGAAGATGAGGAGGCATTGCACTGTTGACAGTGCCCCTCCTCTCACCCAG
GTCTCCTGAAACACAAGCGTAGAATAGTGATGAGTGGTCCCGTAGCATCCAATGCCTTCCACCA
GCAGCCTGGCTGAGGCCTCGGCAGAGTGCCTGGGAGCAGCAGAGCAGCTGGTCTCTTGGGAGCT
TTGGGTGCTCTGCCCCTTTGGTCCCTCTCCCCAGCCAGACAGCCCTAAGGGTGGGCCTGGAGGT
TCTCTGTGGACTCCAAGAAAGCCAGAAGCAGCTCCCAGGCCTGAGAAAGCCCCTGGGAGCCTTG
CTCCAGCCTCCTTATCCCAGCTCTTCACTTCTCCCCTCCTGGTCTCCATTCTCTTTGACCTCCT
ACACTGGATGATGAGATACCTAGTGGGCAGAGCTCAGGCTGGGCTTGGATCAGTTCCACCCTTT
CTCTGCCTTTAGCAGATGTTTAGCTTCTCTAGTCTTCCTCCCAGTGTGGACAGTGGGTAGCACT
TCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATAGAGATATTTGCCTAGTGCCTATCCCCGAGG
GTGTGAGCACAAGTTCTTGCCGTCCTGCCCAGGCTGGTAGAGCTAAGGTGAGAGCATGAGAGAC
AGAGTGCACAGTGGTAATAGCACAGTCTTTGAGAGAGCAGCCTTCGCCTCCATCGTGCTTTTGT
CTCCTCCCTGGTCAGGTGTAGACCTTACCTCTGTGCCTCACTTTTCTCACCTGTGAGATGGGGT
GAATATGCATATATATGCTAATATATTCTAGTTTTATTGGGATTAATTAAAAGAGTTTATCTGT
ACAAA

hide sequence

RefSeq Acc Id:

XM_006235035 ⟹ XP_006235097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,736 - 138,919,129 (+)	NCBI
mRatBN7.2	3	118,451,733 - 118,466,094 (+)	NCBI
Rnor_6.0	3	123,776,173 - 123,790,572 (+)	NCBI
Rnor_5.0	3	130,273,531 - 130,287,792 (+)	NCBI

Sequence:

show sequence

CACTCCGCCCCTTCATCTGGGAGGGCTCTGCACAGTCGAACGCGGTCAACCTGTTTCCTAGTCT
GGTTTCTTCTTGGTAAGTTCGCAGCCTGGGTGTGGGTCCTCAGTGCTCTGTGCTCACTGAGGTT
GTTCAGGGAGGGGACCTTGGTCAGAGCCGAGTGCTCCTAGGATTTCGCAGGAGCGCCCCGGGCC
TGGGCGCTCGGTGCCAGAGAAGATCCTGAACCGGATTAGGGGAGAATGCGGTCTGCCCCATACG
GATTCGCGACCCCGGCAGTTCCTTGAACCGCATCCAGCACCTTTAGCAAGCAGGTAGGTGGTGC
AGAGCGTTTGCCCAGGCTGGACAGAAAGAACCTCGGAGTGCCCCCTGCCTCTCCCAGGCCCTGG
TGACTCGAGCGAGGCCTGGCCGCAAGCAACGACCTGTGGCAGCCGCGCCAGGGGGTAGGCCTGC
CAGTCCGGGCTACGGCCTGATCCTGGATCTGGACAGTTGTAGGCAGTGACATCTGTTCAAAACA
GCCTCTCTGCACTTGGAGACCTGAGTCCCGCCAGGAATCTAGCCTGAGGCCAGGAGACTTGTCT
CTCGGGAGTGTGGATATTTATTTCCGTGACCGGATCAGAAGCTCTGTGGAAGTCAGGTCGGAAG
TTTTGCTGTATCCAGGACGCCCCTGCCATCTCCCTTTCTCTGATATAAGAAAGAAGTTTGAGGA
AAAGGATGAAAACAAGAGAAAGCAAAAAAAAAAAAAAAATGTTCTTTGGATACTGCGAAGCTTC
AAAAACTTGAAGGGCATTCAGCCTCGATCTCAGAACTCAGTCCATCTCTCTCAGTCCATCCCAC
CCACCCAGGGTTGGAGTCCCTCCAGAAGCTGAGCAGCCATGACATTTGCTGAGGAAAAGACCTA
TAAGTATATCCGCTACAACCACAGCAAGTTTTGCTGTGTTGATGTTCTGGAGATCCTGCCTTAC
CTGTCCTGCCTCACAACCAGTGACCAGGATCGATTACGGGCTTCCTACAAGCAACTAGGAAACC
AGGGCACACTCTGGGAACTCTTCAATACGCTCCAGCGTCGGCCTGGCTGGGTAGAGGTCTTCAT
CCGGGCACTGAGGATCTGTGAGCTGCCTGGGCTGGCTGAGCAAGTGACTCGAGTTTATCAGAGC
TACCTGCCTCCTGGGGCCTCACTCCACTCCCTAGACCCATTGCAGTCACCAAGAATTCCTACCA
CGGTTTCCGAACCTTCTGCATTTGCAGCAGGCCACACCATCCCTGACAGTGGCTTCCAAGATAA
ACCAGGTTACCCTAAGCCTGTCCAGGACACCCAGCCACCAAAGTCCCCAGTAGAGAATTCGGAG
GAACCCCCACAGGCCAACTTTGGGGCCATTCCAAGGATGTCGGGTGACTCTTTGATATCCTCAC
CTAACCCACCGGCCCTCAGCCCTCAGCCCTCCAGAGAGCATCCCGAGCAAGAACCCGAACTGGG
GGGCCCCTCCACAGCAAATGTTGACTCTGTTCCCATAGCAACCTATGGACCTGTGTCTCCAACT
GTTTCCTTCCAGCCCCTTCCACGTATTGCCCCGAGGACAAACCTCTCGCCTGGGGTCACAGTAT
CAGCTCTATCTGCCAAGACCACTTTGTCCTCCTCTTCTACTGGATCAGCTTTTGCAAAGGGAGC
AGGTGACCAGGCCAAGGCTGCCACCTGTGTCAGCACTAAAGAGGGAGTACCTACCAATTCTGTG
ACTACCAGCTCAGTGCCTTCCATCAAACCAGTACCAGTAAATACCATGTCTTCCAAGTTGCCCA
TCAGTACAAAGTCCACTGCTGCAACGCCCTCTACTGTGCCCACTAATATAGCGCCATCAAAATT
ACCCATCAACTCAGTATATACTGGCATAGTGCCATCCAAAGTGACTGCTAGTGTGGCCAAAGCA
AGTGCCAGCACAATGCCACCTGAGAGGAACAACAAGCAAGCCAAGGAGACCCTGGAGGCTCCAG
CAACCGTAGTCACCACTGGAAGCAGCCTGACCAGACCAGATATCAGTTCCAGGAGCTTGCACTC
TGGGCCAGAGTTAAGCAAGCCAGGGGTGCTGGTGTCCCAGGTGGACAACGAGCCATTCTCAGCC
TGCTCTATGGACCTTGCCATCAGCCCTAGCACCTCCTTGGGCTCAGAACCCAACCATGGTCCAG
AGGAGAATGAGTATTCATCCTTTCGAATCCAGGTGGATAAAAGTCCCAGTGTTGATCTGTTAGG
AAGCCCTGAGCCACTAGCCACCCAGCAGTCCCCAGAAGAGGAAGAGCCTTGTGCCAGTTCAGTG
TCCTGGGCTAAGTGGCTGGGGGCCACCAGTGCACTCTTGGCTGCATTCCTGGCAGTGATGCTCT
ACCGTAGCAGGCACCTGGCCCAGTGAAGCCTCAGCTGTATGCCACACTCACTTGCTCAGTCCTG
CCAAGCATGCCCTCTAGGCTTGGGGTGGTAGATATGGCGAGGTCCACTGAGTTATCCAGGTACA
GGTGCTACCTGTACTGAGGCGCCATCACTATGTGGTGGGGGAAGAGACACTGCTTCTATCCTGG
TTCATGTCATCTTCTGGTCTTCAGCTTTTGGGGGCCCTGTATCCCTTCCATTGCTTCTGACCTG
CCCACAGGGCAGGGTAAGATTGCATGCTATGTGCTCCTAAGGAGGTATCCCCACCAGACTCATC
CCTATTGGCCCAAGCCTGAAGATGAGGAGGCATTGCACTGTTGACAGTGCCCCTCCTCTCACCC
AGGTCTCCTGAAACACAAGCGTAGAATAGTGATGAGTGGTCCCGTAGCATCCAATGCCTTCCAC
CAGCAGCCTGGCTGAGGCCTCGGCAGAGTGCCTGGGAGCAGCAGAGCAGCTGGTCTCTTGGGAG
CTTTGGGTGCTCTGCCCCTTTGGTCCCTCTCCCCAGCCAGACAGCCCTAAGGGTGGGCCTGGAG
GTTCTCTGTGGACTCCAAGAAAGCCAGAAGCAGCTCCCAGGCCTGAGAAAGCCCCTGGGAGCCT
TGCTCCAGCCTCCTTATCCCAGCTCTTCACTTCTCCCCTCCTGGTCTCCATTCTCTTTGACCTC
CTACACTGGATGATGAGATACCTAGTGGGCAGAGCTCAGGCTGGGCTTGGATCAGTTCCACCCT
TTCTCTGCCTTTAGCAGATGTTTAGCTTCTCTAGTCTTCCTCCCAGTGTGGACAGTGGGTAGCA
CTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATAGAGATATTTGCCTAGTGCCTATCCCCGA
GGGTGTGAGCACAAGTTCTTGCCGTCCTGCCCAGGCTGGTAGAGCTAAGGTGAGAGCATGAGAG
ACAGAGTGCACAGTGGTAATAGCACAGTCTTTGAGAGAGCAGCCTTCGCCTCCATCGTGCTTTT
GTCTCCTCCCTGGTCAGGTGTAGACCTTACCTCTGTGCCTCACTTTTCTCACCTGTGAGATGGG
GTGAATATGCATATATATGCTAATATATTCTAGTTTTATTGGGATTAATTAAAAGAGTTTATCT
GTACAAA

hide sequence

RefSeq Acc Id:

XM_006235036 ⟹ XP_006235098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,743 - 138,919,129 (+)	NCBI
mRatBN7.2	3	118,451,754 - 118,466,094 (+)	NCBI
Rnor_6.0	3	123,776,172 - 123,790,572 (+)	NCBI
Rnor_5.0	3	130,273,531 - 130,287,792 (+)	NCBI

Sequence:

show sequence

CCACTCCGCCCCTTCATCTGGGAGGGCTCTGCACAGTCGAACGCGGTCAACCTGTTTCCTAGTC
TGGTTTCTTCTTGGTGACCTGGGAAAGGAGGAGGAAGGGTTTCACTTGGCTGGCCTCTACAGAG
TCCATCTCTCTCAGTCCATCCCACCCACCCAGGGTTGGAGTCCCTCCAGAAGCTGAGCAGCCAT
GACATTTGCTGAGGAAAAGACCTATAAGTATATCCGCTACAACCACAGCAAGTTTTGCTGTGTT
GATGTTCTGGAGATCCTGCCTTACCTGTCCTGCCTCACAACCAGTGACCAGGATCGATTACGGG
CTTCCTACAAGCAACTAGGAAACCAGGGCACACTCTGGGAACTCTTCAATACGCTCCAGCGTCG
GCCTGGCTGGGTAGAGGTCTTCATCCGGGCACTGAGGATCTGTGAGCTGCCTGGGCTGGCTGAG
CAAGTGACTCGAGTTTATCAGAGCTACCTGCCTCCTGGGGCCTCACTCCACTCCCTAGACCCAT
TGCAGTCACCAAGAATTCCTACCACGGTTTCCGAACCTTCTGCATTTGCAGCAGGCCACACCAT
CCCTGACAGTGGCTTCCAAGATAAACCAGGTTACCCTAAGCCTGTCCAGGACACCCAGCCACCA
AAGTCCCCAGTAGAGAATTCGGAGGAACCCCCACAGGCCAACTTTGGGGCCATTCCAAGGATGT
CGGGTGACTCTTTGATATCCTCACCTAACCCACCGGCCCTCAGCCCTCAGCCCTCCAGAGAGCA
TCCCGAGCAAGAACCCGAACTGGGGGGCCCCTCCACAGCAAATGTTGACTCTGTTCCCATAGCA
ACCTATGGACCTGTGTCTCCAACTGTTTCCTTCCAGCCCCTTCCACGTATTGCCCCGAGGACAA
ACCTCTCGCCTGGGGTCACAGTATCAGCTCTATCTGCCAAGACCACTTTGTCCTCCTCTTCTAC
TGGATCAGCTTTTGCAAAGGGAGCAGGTGACCAGGCCAAGGCTGCCACCTGTGTCAGCACTAAA
GAGGGAGTACCTACCAATTCTGTGACTACCAGCTCAGTGCCTTCCATCAAACCAGTACCAGTAA
ATACCATGTCTTCCAAGTTGCCCATCAGTACAAAGTCCACTGCTGCAACGCCCTCTACTGTGCC
CACTAATATAGCGCCATCAAAATTACCCATCAACTCAGTATATACTGGCATAGTGCCATCCAAA
GTGACTGCTAGTGTGGCCAAAGCAAGTGCCAGCACAATGCCACCTGAGAGGAACAACAAGCAAG
CCAAGGAGACCCTGGAGGCTCCAGCAACCGTAGTCACCACTGGAAGCAGCCTGACCAGACCAGA
TATCAGTTCCAGGAGCTTGCACTCTGGGCCAGAGTTAAGCAAGCCAGGGGTGCTGGTGTCCCAG
GTGGACAACGAGCCATTCTCAGCCTGCTCTATGGACCTTGCCATCAGCCCTAGCACCTCCTTGG
GCTCAGAACCCAACCATGGTCCAGAGGAGAATGAGTATTCATCCTTTCGAATCCAGGTGGATAA
AAGTCCCAGTGTTGATCTGTTAGGAAGCCCTGAGCCACTAGCCACCCAGCAGTCCCCAGAAGAG
GAAGAGCCTTGTGCCAGTTCAGTGTCCTGGGCTAAGTGGCTGGGGGCCACCAGTGCACTCTTGG
CTGCATTCCTGGCAGTGATGCTCTACCGTAGCAGGCACCTGGCCCAGTGAAGCCTCAGCTGTAT
GCCACACTCACTTGCTCAGTCCTGCCAAGCATGCCCTCTAGGCTTGGGGTGGTAGATATGGCGA
GGTCCACTGAGTTATCCAGGTACAGGTGCTACCTGTACTGAGGCGCCATCACTATGTGGTGGGG
GAAGAGACACTGCTTCTATCCTGGTTCATGTCATCTTCTGGTCTTCAGCTTTTGGGGGCCCTGT
ATCCCTTCCATTGCTTCTGACCTGCCCACAGGGCAGGGTAAGATTGCATGCTATGTGCTCCTAA
GGAGGTATCCCCACCAGACTCATCCCTATTGGCCCAAGCCTGAAGATGAGGAGGCATTGCACTG
TTGACAGTGCCCCTCCTCTCACCCAGGTCTCCTGAAACACAAGCGTAGAATAGTGATGAGTGGT
CCCGTAGCATCCAATGCCTTCCACCAGCAGCCTGGCTGAGGCCTCGGCAGAGTGCCTGGGAGCA
GCAGAGCAGCTGGTCTCTTGGGAGCTTTGGGTGCTCTGCCCCTTTGGTCCCTCTCCCCAGCCAG
ACAGCCCTAAGGGTGGGCCTGGAGGTTCTCTGTGGACTCCAAGAAAGCCAGAAGCAGCTCCCAG
GCCTGAGAAAGCCCCTGGGAGCCTTGCTCCAGCCTCCTTATCCCAGCTCTTCACTTCTCCCCTC
CTGGTCTCCATTCTCTTTGACCTCCTACACTGGATGATGAGATACCTAGTGGGCAGAGCTCAGG
CTGGGCTTGGATCAGTTCCACCCTTTCTCTGCCTTTAGCAGATGTTTAGCTTCTCTAGTCTTCC
TCCCAGTGTGGACAGTGGGTAGCACTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATAGAGA
TATTTGCCTAGTGCCTATCCCCGAGGGTGTGAGCACAAGTTCTTGCCGTCCTGCCCAGGCTGGT
AGAGCTAAGGTGAGAGCATGAGAGACAGAGTGCACAGTGGTAATAGCACAGTCTTTGAGAGAGC
AGCCTTCGCCTCCATCGTGCTTTTGTCTCCTCCCTGGTCAGGTGTAGACCTTACCTCTGTGCCT
CACTTTTCTCACCTGTGAGATGGGGTGAATATGCATATATATGCTAATATATTCTAGTTTTATT
GGGATTAATTAAAAGAGTTTATCTGTACAAA

hide sequence

RefSeq Acc Id:

XM_006235037 ⟹ XP_006235099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,812 - 138,919,129 (+)	NCBI
mRatBN7.2	3	118,451,733 - 118,466,094 (+)	NCBI
Rnor_6.0	3	123,776,174 - 123,790,572 (+)	NCBI
Rnor_5.0	3	130,273,531 - 130,287,792 (+)	NCBI

Sequence:

show sequence

ACTCCGCCCCTTCATCTGGGAGGGCTCTGCACAGTCGAACGCGGTCAACCTGTTTCCTAGTCTG
GTTTCTTCTTGGTAAGTTCGCAGCCTGGGTGTGGGTCCTCAGTGCTCTGTGCTCACTGAGGTTG
TTCAGGGAGGGGACCTTGGTCAGAGCCGAGTGCTCCTAGGATTTCGCAGGAGCGCCCCGGGCCT
GGGCGCTCGGTGCCAGAGAAGATCCTGAACCGGATTAGGGGAGAATGCGGTCTGCCCCATACGG
ATTCGCGACCCCGGCAGTTCCTTGAACCGCATCCAGCACCTTTAGCAAGCAGGATCGATTACGG
GCTTCCTACAAGCAACTAGGAAACCAGGGCACACTCTGGGAACTCTTCAATACGCTCCAGCGTC
GGCCTGGCTGGGTAGAGGTCTTCATCCGGGCACTGAGGATCTGTGAGCTGCCTGGGCTGGCTGA
GCAAGTGACTCGAGTTTATCAGAGCTACCTGCCTCCTGGGGCCTCACTCCACTCCCTAGACCCA
TTGCAGTCACCAAGAATTCCTACCACGGTTTCCGAACCTTCTGCATTTGCAGCAGGCCACACCA
TCCCTGACAGTGGCTTCCAAGATAAACCAGGTTACCCTAAGCCTGTCCAGGACACCCAGCCACC
AAAGTCCCCAGTAGAGAATTCGGAGGAACCCCCACAGGCCAACTTTGGGGCCATTCCAAGGATG
TCGGGTGACTCTTTGATATCCTCACCTAACCCACCGGCCCTCAGCCCTCAGCCCTCCAGAGAGC
ATCCCGAGCAAGAACCCGAACTGGGGGGCCCCTCCACAGCAAATGTTGACTCTGTTCCCATAGC
AACCTATGGACCTGTGTCTCCAACTGTTTCCTTCCAGCCCCTTCCACGTATTGCCCCGAGGACA
AACCTCTCGCCTGGGGTCACAGTATCAGCTCTATCTGCCAAGACCACTTTGTCCTCCTCTTCTA
CTGGATCAGCTTTTGCAAAGGGAGCAGGTGACCAGGCCAAGGCTGCCACCTGTGTCAGCACTAA
AGAGGGAGTACCTACCAATTCTGTGACTACCAGCTCAGTGCCTTCCATCAAACCAGTACCAGTA
AATACCATGTCTTCCAAGTTGCCCATCAGTACAAAGTCCACTGCTGCAACGCCCTCTACTGTGC
CCACTAATATAGCGCCATCAAAATTACCCATCAACTCAGTATATACTGGCATAGTGCCATCCAA
AGTGACTGCTAGTGTGGCCAAAGCAAGTGCCAGCACAATGCCACCTGAGAGGAACAACAAGCAA
GCCAAGGAGACCCTGGAGGCTCCAGCAACCGTAGTCACCACTGGAAGCAGCCTGACCAGACCAG
ATATCAGTTCCAGGAGCTTGCACTCTGGGCCAGAGTTAAGCAAGCCAGGGGTGCTGGTGTCCCA
GGTGGACAACGAGCCATTCTCAGCCTGCTCTATGGACCTTGCCATCAGCCCTAGCACCTCCTTG
GGCTCAGAACCCAACCATGGTCCAGAGGAGAATGAGTATTCATCCTTTCGAATCCAGGTGGATA
AAAGTCCCAGTGTTGATCTGTTAGGAAGCCCTGAGCCACTAGCCACCCAGCAGTCCCCAGAAGA
GGAAGAGCCTTGTGCCAGTTCAGTGTCCTGGGCTAAGTGGCTGGGGGCCACCAGTGCACTCTTG
GCTGCATTCCTGGCAGTGATGCTCTACCGTAGCAGGCACCTGGCCCAGTGAAGCCTCAGCTGTA
TGCCACACTCACTTGCTCAGTCCTGCCAAGCATGCCCTCTAGGCTTGGGGTGGTAGATATGGCG
AGGTCCACTGAGTTATCCAGGTACAGGTGCTACCTGTACTGAGGCGCCATCACTATGTGGTGGG
GGAAGAGACACTGCTTCTATCCTGGTTCATGTCATCTTCTGGTCTTCAGCTTTTGGGGGCCCTG
TATCCCTTCCATTGCTTCTGACCTGCCCACAGGGCAGGGTAAGATTGCATGCTATGTGCTCCTA
AGGAGGTATCCCCACCAGACTCATCCCTATTGGCCCAAGCCTGAAGATGAGGAGGCATTGCACT
GTTGACAGTGCCCCTCCTCTCACCCAGGTCTCCTGAAACACAAGCGTAGAATAGTGATGAGTGG
TCCCGTAGCATCCAATGCCTTCCACCAGCAGCCTGGCTGAGGCCTCGGCAGAGTGCCTGGGAGC
AGCAGAGCAGCTGGTCTCTTGGGAGCTTTGGGTGCTCTGCCCCTTTGGTCCCTCTCCCCAGCCA
GACAGCCCTAAGGGTGGGCCTGGAGGTTCTCTGTGGACTCCAAGAAAGCCAGAAGCAGCTCCCA
GGCCTGAGAAAGCCCCTGGGAGCCTTGCTCCAGCCTCCTTATCCCAGCTCTTCACTTCTCCCCT
CCTGGTCTCCATTCTCTTTGACCTCCTACACTGGATGATGAGATACCTAGTGGGCAGAGCTCAG
GCTGGGCTTGGATCAGTTCCACCCTTTCTCTGCCTTTAGCAGATGTTTAGCTTCTCTAGTCTTC
CTCCCAGTGTGGACAGTGGGTAGCACTTCCTTTTACTGGGCTCCTCTGAGTTTGAAGGATAGAG
ATATTTGCCTAGTGCCTATCCCCGAGGGTGTGAGCACAAGTTCTTGCCGTCCTGCCCAGGCTGG
TAGAGCTAAGGTGAGAGCATGAGAGACAGAGTGCACAGTGGTAATAGCACAGTCTTTGAGAGAG
CAGCCTTCGCCTCCATCGTGCTTTTGTCTCCTCCCTGGTCAGGTGTAGACCTTACCTCTGTGCC
TCACTTTTCTCACCTGTGAGATGGGGTGAATATGCATATATATGCTAATATATTCTAGTTTTAT
TGGGATTAATTAAAAGAGTTTATCTGTACAAA

hide sequence

RefSeq Acc Id:

XM_039105011 ⟹ XP_038960939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,790 - 138,919,129 (+)	NCBI
mRatBN7.2	3	118,451,727 - 118,466,094 (+)	NCBI

RefSeq Acc Id:

XM_063283774 ⟹ XP_063139844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,906,047 - 138,919,129 (+)	NCBI

RefSeq Acc Id:

XM_063283775 ⟹ XP_063139845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,731 - 138,919,129 (+)	NCBI

RefSeq Acc Id:

XM_063283776 ⟹ XP_063139846

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,788 - 138,919,129 (+)	NCBI

RefSeq Acc Id:

XM_063283778 ⟹ XP_063139848

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,796 - 138,919,129 (+)	NCBI

RefSeq Acc Id:

XM_063283779 ⟹ XP_063139849

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,787 - 138,919,129 (+)	NCBI

RefSeq Acc Id:

XM_063283780 ⟹ XP_063139850

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,906,044 - 138,919,129 (+)	NCBI

RefSeq Acc Id:

XM_063283781 ⟹ XP_063139851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,904,673 - 138,919,129 (+)	NCBI

RefSeq Acc Id:

XM_063283782 ⟹ XP_063139852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,906,043 - 138,916,715 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001005556	(Get FASTA)	NCBI Sequence Viewer
	XP_006235096	(Get FASTA)	NCBI Sequence Viewer
	XP_006235097	(Get FASTA)	NCBI Sequence Viewer
	XP_006235098	(Get FASTA)	NCBI Sequence Viewer
	XP_006235099	(Get FASTA)	NCBI Sequence Viewer
	XP_038960939	(Get FASTA)	NCBI Sequence Viewer
	XP_063139844	(Get FASTA)	NCBI Sequence Viewer
	XP_063139845	(Get FASTA)	NCBI Sequence Viewer
	XP_063139846	(Get FASTA)	NCBI Sequence Viewer
	XP_063139848	(Get FASTA)	NCBI Sequence Viewer
	XP_063139849	(Get FASTA)	NCBI Sequence Viewer
	XP_063139850	(Get FASTA)	NCBI Sequence Viewer
	XP_063139851	(Get FASTA)	NCBI Sequence Viewer
	XP_063139852	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81869	(Get FASTA)	NCBI Sequence Viewer
	EDL80235	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033476.4
	ENSRNOP00000073053
	ENSRNOP00000073053.1
	ENSRNOP00055006764
	ENSRNOP00060003008
	ENSRNOP00065017500
GenBank Protein	Q66HG9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001005556 ⟸ NM_001005556

- UniProtKB:

Q66HG9 (UniProtKB/Swiss-Prot), A6HQD4 (UniProtKB/TrEMBL), A0A8L2QH64 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTFAEEKTYKYIRYNHSKFCCVDVLEILPYLSCLTTSDQDRLRASYKQLGNQGTLWELFNTLQR
RPGWVEVFIRALRICELPGLAEQVTRVYQSYLPPGASLHSLDPLQSPRIPTTVSEPSAFAAGHT
IPDSGFQDKPGYPKPVQDTQPPKSPVENSEEPPQANFGAIPRMSGDSLISSPNPPALSPQPSRE
HPEQEPELGGPSTANVDSVPIATYGPVSPTVSFQPLPRIAPRTNLSPGVTVSALSAKTTLSSSS
TGSAFAKGAGDQAKAATCVSTKEGVPTNSVTTSSVPSIKPVPVNTMSSKLPISTKSTAATPSTV
PTNIAPSKLPINSVYTGIVPSKVTASVAKASASTMPPERNNKQAKETLEAPATVVTTGSSLTRP
DISSRSLHSGPELSKPGVLVSQVDNEPFSACSMDLAISPSTSLGSEPNHGPEENEYSSFRIQVD
KSPSVDLLGSPEPLATQQSPEEEEPCASSVSWAKWLGATSALLAAFLAVMLYRSRHLAQ

hide sequence

RefSeq Acc Id:	XP_006235096 ⟸ XM_006235034
- Peptide Label:	isoform X1
- UniProtKB:	Q66HG9 (UniProtKB/Swiss-Prot), A6HQD4 (UniProtKB/TrEMBL), A0A8L2QH64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTFAEEKTYKYIRYNHSKFCCVDVLEILPYLSCLTTSDQDRLRASYKQLGNQGTLWELFNTLQR RPGWVEVFIRALRICELPGLAEQVTRVYQSYLPPGASLHSLDPLQSPRIPTTVSEPSAFAAGHT IPDSGFQDKPGYPKPVQDTQPPKSPVENSEEPPQANFGAIPRMSGDSLISSPNPPALSPQPSRE HPEQEPELGGPSTANVDSVPIATYGPVSPTVSFQPLPRIAPRTNLSPGVTVSALSAKTTLSSSS TGSAFAKGAGDQAKAATCVSTKEGVPTNSVTTSSVPSIKPVPVNTMSSKLPISTKSTAATPSTV PTNIAPSKLPINSVYTGIVPSKVTASVAKASASTMPPERNNKQAKETLEAPATVVTTGSSLTRP DISSRSLHSGPELSKPGVLVSQVDNEPFSACSMDLAISPSTSLGSEPNHGPEENEYSSFRIQVD KSPSVDLLGSPEPLATQQSPEEEEPCASSVSWAKWLGATSALLAAFLAVMLYRSRHLAQ hide sequence

RefSeq Acc Id:

XP_006235099 ⟸ XM_006235037

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSGDSLISSPNPPALSPQPSREHPEQEPELGGPSTANVDSVPIATYGPVSPTVSFQPLPRIAPR
TNLSPGVTVSALSAKTTLSSSSTGSAFAKGAGDQAKAATCVSTKEGVPTNSVTTSSVPSIKPVP
VNTMSSKLPISTKSTAATPSTVPTNIAPSKLPINSVYTGIVPSKVTASVAKASASTMPPERNNK
QAKETLEAPATVVTTGSSLTRPDISSRSLHSGPELSKPGVLVSQVDNEPFSACSMDLAISPSTS
LGSEPNHGPEENEYSSFRIQVDKSPSVDLLGSPEPLATQQSPEEEEPCASSVSWAKWLGATSAL
LAAFLAVMLYRSRHLAQ

hide sequence

RefSeq Acc Id:	XP_006235098 ⟸ XM_006235036
- Peptide Label:	isoform X1
- UniProtKB:	Q66HG9 (UniProtKB/Swiss-Prot), A6HQD4 (UniProtKB/TrEMBL), A0A8L2QH64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTFAEEKTYKYIRYNHSKFCCVDVLEILPYLSCLTTSDQDRLRASYKQLGNQGTLWELFNTLQR RPGWVEVFIRALRICELPGLAEQVTRVYQSYLPPGASLHSLDPLQSPRIPTTVSEPSAFAAGHT IPDSGFQDKPGYPKPVQDTQPPKSPVENSEEPPQANFGAIPRMSGDSLISSPNPPALSPQPSRE HPEQEPELGGPSTANVDSVPIATYGPVSPTVSFQPLPRIAPRTNLSPGVTVSALSAKTTLSSSS TGSAFAKGAGDQAKAATCVSTKEGVPTNSVTTSSVPSIKPVPVNTMSSKLPISTKSTAATPSTV PTNIAPSKLPINSVYTGIVPSKVTASVAKASASTMPPERNNKQAKETLEAPATVVTTGSSLTRP DISSRSLHSGPELSKPGVLVSQVDNEPFSACSMDLAISPSTSLGSEPNHGPEENEYSSFRIQVD KSPSVDLLGSPEPLATQQSPEEEEPCASSVSWAKWLGATSALLAAFLAVMLYRSRHLAQ hide sequence

RefSeq Acc Id:	XP_006235097 ⟸ XM_006235035
- Peptide Label:	isoform X1
- UniProtKB:	Q66HG9 (UniProtKB/Swiss-Prot), A6HQD4 (UniProtKB/TrEMBL), A0A8L2QH64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTFAEEKTYKYIRYNHSKFCCVDVLEILPYLSCLTTSDQDRLRASYKQLGNQGTLWELFNTLQR RPGWVEVFIRALRICELPGLAEQVTRVYQSYLPPGASLHSLDPLQSPRIPTTVSEPSAFAAGHT IPDSGFQDKPGYPKPVQDTQPPKSPVENSEEPPQANFGAIPRMSGDSLISSPNPPALSPQPSRE HPEQEPELGGPSTANVDSVPIATYGPVSPTVSFQPLPRIAPRTNLSPGVTVSALSAKTTLSSSS TGSAFAKGAGDQAKAATCVSTKEGVPTNSVTTSSVPSIKPVPVNTMSSKLPISTKSTAATPSTV PTNIAPSKLPINSVYTGIVPSKVTASVAKASASTMPPERNNKQAKETLEAPATVVTTGSSLTRP DISSRSLHSGPELSKPGVLVSQVDNEPFSACSMDLAISPSTSLGSEPNHGPEENEYSSFRIQVD KSPSVDLLGSPEPLATQQSPEEEEPCASSVSWAKWLGATSALLAAFLAVMLYRSRHLAQ hide sequence

RefSeq Acc Id:

ENSRNOP00000073053 ⟸ ENSRNOT00000090764

RefSeq Acc Id:

ENSRNOP00000033476 ⟸ ENSRNOT00000034146

RefSeq Acc Id:	XP_038960939 ⟸ XM_039105011
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063139851 ⟸ XM_063283781
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063139845 ⟸ XM_063283775
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063139849 ⟸ XM_063283779
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063139846 ⟸ XM_063283776
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063139848 ⟸ XM_063283778
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063139852 ⟸ XM_063283782
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063139850 ⟸ XM_063283780
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063139844 ⟸ XM_063283774
- Peptide Label:	isoform X1

Protein Domains

CARD Caspase recruitment

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66HG9-F1-model_v2	AlphaFold	Q66HG9	1-507	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692453

Promoter ID:

EPDNEW_R2973

Type:

initiation region

Name:

Mavs_1

Description:

mitochondrial antiviral signaling protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	123,776,210 - 123,776,270	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359371	AgrOrtholog
BioCyc Gene	G2FUF-47818	BioCyc
Ensembl Genes	ENSRNOG00000025295	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055005539	UniProtKB/Swiss-Prot
	ENSRNOG00060002683	UniProtKB/Swiss-Prot
	ENSRNOG00065013707	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000034146.4	UniProtKB/TrEMBL
	ENSRNOT00000090764	ENTREZGENE
	ENSRNOT00000090764.2	UniProtKB/Swiss-Prot
	ENSRNOT00055008896	UniProtKB/Swiss-Prot
	ENSRNOT00060004295	UniProtKB/Swiss-Prot
	ENSRNOT00065022557	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.533.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7106026	IMAGE-MGC_LOAD
InterPro	CARD_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CARD_IPS1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DEATH-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:311430	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93707	IMAGE-MGC_LOAD
NCBI Gene	311430	ENTREZGENE
PANTHER	DUF3504 DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR21446:SF6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CARD_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Mavs	PhenoGen
RatGTEx	ENSRNOG00000025295	RatGTEx
	ENSRNOG00055005539	RatGTEx
	ENSRNOG00060002683	RatGTEx
	ENSRNOG00065013707	RatGTEx
UniProt	A0A8L2QH64	ENTREZGENE, UniProtKB/TrEMBL
	A6HQD4	ENTREZGENE, UniProtKB/TrEMBL
	MAVS_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-05-05	Mavs	mitochondrial antiviral signaling protein	Visa	virus-induced signaling adapter	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Visa	virus-induced signaling adapter	MGC93707	similar to RIKEN cDNA D430028G21	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	MGC93707	similar to RIKEN cDNA D430028G21			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)