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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular matrix organization
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Accession:GO:0030198 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
Synonyms:exact_synonym: extracellular matrix organisation
 related_synonym: extracellular matrix organization and biogenesis


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extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2300002M23Rik RIKEN cDNA 2300002M23 gene acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr17:35,878,382...35,879,842
Ensembl chr17:35,878,347...35,879,849 		JBrowse link
G Abi3bp ABI family member 3 binding protein acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr16:56,298,179...56,510,498
Ensembl chr16:56,298,241...56,510,498 		JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr16:85,590,715...85,600,001
Ensembl chr16:85,590,715...85,600,001 		JBrowse link
G Adamts10 ADAM metallopeptidase with thrombospondin type 1 motif 10 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr17:33,742,620...33,772,756
Ensembl chr17:33,743,178...33,772,756 		JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:11,064,781...11,349,321
Ensembl chr15:11,064,876...11,349,317 		JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif 13 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:26,863,363...26,899,638
Ensembl chr 2:26,863,428...26,899,640 		JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif 14 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:61,032,886...61,109,447
Ensembl chr10:61,032,891...61,109,217 		JBrowse link
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:30,810,451...30,833,853
Ensembl chr 9:30,810,451...30,833,748 		JBrowse link
G Adamts16 ADAM metallopeptidase with thrombospondin type 1 motif 16 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr13:70,875,917...70,989,956
Ensembl chr13:70,875,921...70,989,930 		JBrowse link
G Adamts17 ADAM metallopeptidase with thrombospondin type 1 motif 17 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 7:66,487,387...66,802,373
Ensembl chr 7:66,489,483...66,802,919 		JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif 18 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:114,423,755...114,575,975
Ensembl chr 8:114,423,758...114,575,370 		JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:58,967,819...59,186,754
Ensembl chr18:58,969,739...59,187,132 		JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:50,492,912...50,698,400
Ensembl chr11:50,492,911...50,698,400 		JBrowse link
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18454205) MGI
GO_Central		 PMID:18454205 GO_REF:0000033 NCBI chr15:94,166,177...94,329,966
Ensembl chr15:94,168,044...94,363,299 		JBrowse link
G Adamts3 ADAM metallopeptidase with thrombospondin type 1 motif 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:89,821,700...90,031,521
Ensembl chr 5:89,824,946...90,031,193 		JBrowse link
G Adamts4 ADAM metallopeptidase with thrombospondin type 1 motif 4 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:171,077,698...171,089,836
Ensembl chr 1:171,077,990...171,088,206 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in TAS
IBA		 (PMID:23531444) BHF-UCL
GO_Central		 PMID:23531444 GO_REF:0000033 NCBI chr16:85,655,045...85,698,013
Ensembl chr16:85,653,061...85,698,716 		JBrowse link
G Adamts6 ADAM metallopeptidase with thrombospondin type 1 motif 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:104,423,026...104,633,203
Ensembl chr13:104,424,343...104,633,203 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:90,041,420...90,082,155
Ensembl chr 9:90,045,122...90,090,124 		JBrowse link
G Adamts8 ADAM metallopeptidase with thrombospondin type 1 motif 8 involved_in IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 9:30,853,858...30,875,134
Ensembl chr 9:30,853,858...30,875,134 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 involved_in IMP
IBA		 (PMID:20096780) BHF-UCL
GO_Central		 PMID:20096780 GO_REF:0000033 NCBI chr 6:92,749,680...92,921,431
Ensembl chr 6:92,749,680...92,920,473 		JBrowse link
G Adamtsl1 ADAMTS-like 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:85,432,242...86,346,627
Ensembl chr 4:85,432,409...86,346,622 		JBrowse link
G Adamtsl2 ADAMTS-like 2 acts_upstream_of_or_within IMP (PMID:25762570) MGI PMID:25762570 NCBI chr 2:26,969,348...26,998,993
Ensembl chr 2:26,969,391...26,998,993 		JBrowse link
G Adamtsl4 ADAMTS-like 4 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 3:95,583,511...95,595,232
Ensembl chr 3:95,583,511...95,595,228 		JBrowse link
G Agt angiotensinogen acts_upstream_of_or_within IMP (PMID:9734405) MGI PMID:9734405 NCBI chr 8:125,283,326...125,296,445
Ensembl chr 8:125,283,273...125,296,445 		JBrowse link
G Ambn ameloblastin acts_upstream_of_or_within TAS (PMID:9786327) MGI PMID:9786327 NCBI chr 5:88,603,850...88,616,390
Ensembl chr 5:88,603,850...88,616,390 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 acts_upstream_of_or_within IGI (PMID:16407979) MGI PMID:16407979 NCBI chr 7:105,207,691...105,231,151
Ensembl chr 7:105,207,690...105,230,860 		JBrowse link
G Apbb2 amyloid beta precursor protein binding family B member 2 acts_upstream_of_or_within IGI (PMID:16407979) MGI PMID:16407979 NCBI chr 5:66,456,068...66,779,189
Ensembl chr 5:66,456,046...66,776,127 		JBrowse link
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within IGI (PMID:15385965) MGI PMID:15385965 NCBI chr 7:30,134,405...30,144,960
Ensembl chr 7:30,134,407...30,144,960 		JBrowse link
G Aplp2 amyloid beta precursor-like protein 2 acts_upstream_of_or_within IGI (PMID:15385965) MGI PMID:15385965 NCBI chr 9:31,060,853...31,123,144
Ensembl chr 9:31,060,853...31,123,111 		JBrowse link
G App amyloid beta precursor protein acts_upstream_of_or_within IGI (PMID:15385965) MGI PMID:15385965 NCBI chr16:84,751,236...84,972,187
Ensembl chr16:84,746,573...84,970,654 		JBrowse link
G Atp7a ATPase, copper transporting, alpha polypeptide acts_upstream_of_or_within IMP (PMID:1115218) MGI PMID:1115218 NCBI chr  X:105,070,830...105,171,766
Ensembl chr  X:105,070,882...105,168,532 		JBrowse link
G Atxn1l ataxin 1-like acts_upstream_of_or_within IMP (PMID:22014525) MGI PMID:22014525 NCBI chr 8:110,453,083...110,464,426
Ensembl chr 8:110,453,083...110,464,371 		JBrowse link
G B4galt1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 acts_upstream_of_or_within IMP (PMID:11900463) MGI PMID:11900463 NCBI chr 4:40,804,602...40,855,711
Ensembl chr 4:40,804,602...40,854,005 		JBrowse link
G Bcl3 B cell leukemia/lymphoma 3 acts_upstream_of_or_within IMP (PMID:10586052) MGI PMID:10586052 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695 		JBrowse link
G Ccdc80 coiled-coil domain containing 80 involved_in
acts_upstream_of_or_within		 IBA
IDA		 (PMID:18757743) GO_Central
MGI		 PMID:18757743 GO_REF:0000033 NCBI chr16:44,913,770...44,948,287
Ensembl chr16:44,913,765...44,948,440 		JBrowse link
G Ccn1 cellular communication network factor 1 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 3:145,352,726...145,355,740
Ensembl chr 3:145,352,731...145,355,736 		JBrowse link
G Col10a1 collagen, type X, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:34,265,977...34,273,081
Ensembl chr10:34,265,977...34,273,081 		JBrowse link
G Col11a1 collagen, type XI, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:113,823,933...114,014,405
Ensembl chr 3:113,824,189...114,014,367 		JBrowse link
G Col13a1 collagen, type XIII, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:61,674,013...61,814,985
Ensembl chr10:61,674,015...61,814,887 		JBrowse link
G Col15a1 collagen, type XV, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:47,207,744...47,313,165
Ensembl chr 4:47,208,161...47,313,167 		JBrowse link
G Col16a1 collagen, type XVI, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:129,941,638...129,993,070
Ensembl chr 4:129,941,633...129,993,076 		JBrowse link
G Col17a1 collagen, type XVII, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:47,634,783...47,680,460
Ensembl chr19:47,634,783...47,680,533 		JBrowse link
G Col18a1 collagen, type XVIII, alpha 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:15254016) MGI
GO_Central		 PMID:15254016 GO_REF:0000033 NCBI chr10:76,888,013...77,002,351
Ensembl chr10:76,888,012...77,002,382 		JBrowse link
G Col19a1 collagen, type XIX, alpha 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:15302855) MGI
GO_Central		 PMID:15302855 GO_REF:0000033 NCBI chr 1:24,296,764...24,627,870
Ensembl chr 1:24,300,971...24,626,553 		JBrowse link
G Col1a1 collagen, type I, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:94,827,050...94,843,868
Ensembl chr11:94,827,050...94,843,868 		JBrowse link
G Col1a2 collagen, type I, alpha 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:4,505,618...4,541,543
Ensembl chr 6:4,504,814...4,541,544 		JBrowse link
G Col22a1 collagen, type XXII, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:71,667,644...71,906,087
Ensembl chr15:71,667,644...71,906,076 		JBrowse link
G Col23a1 collagen, type XXIII, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:51,180,508...51,474,752
Ensembl chr11:51,180,747...51,474,745 		JBrowse link
G Col24a1 collagen, type XXIV, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:144,998,233...145,257,768
Ensembl chr 3:144,998,233...145,257,766 		JBrowse link
G Col27a1 collagen, type XXVII, alpha 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:22206015) MGI
GO_Central		 PMID:22206015 GO_REF:0000033 NCBI chr 4:63,132,246...63,253,228
Ensembl chr 4:63,132,241...63,253,228 		JBrowse link
G Col28a1 collagen, type XXVIII, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:7,997,100...8,193,709
Ensembl chr 6:7,997,808...8,192,617 		JBrowse link
G Col2a1 collagen, type II, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Col3a1 collagen, type III, alpha 1 involved_in IMP
IBA		 (PMID:31655293)
(PMID:25330296)		 MGI
GO_Central		 PMID:25330296 PMID:31655293 GO_REF:0000033 NCBI chr 1:45,350,698...45,388,866
Ensembl chr 1:45,350,698...45,388,866 		JBrowse link
G Col4a1 collagen, type IV, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:11,248,423...11,362,889
Ensembl chr 8:11,248,423...11,362,826 		JBrowse link
G Col4a2 collagen, type IV, alpha 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:11,362,878...11,499,287
Ensembl chr 8:11,362,805...11,499,287 		JBrowse link
G Col4a3 collagen, type IV, alpha 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:82,564,647...82,699,778
Ensembl chr 1:82,564,642...82,699,780 		JBrowse link
G Col4a5 collagen, type IV, alpha 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:140,258,367...140,472,232
Ensembl chr  X:140,258,381...140,472,230 		JBrowse link
G Col4a6 collagen, type IV, alpha 6 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:10965041) MGI
GO_Central		 PMID:10965041 GO_REF:0000033 NCBI chr  X:139,948,399...140,257,091
Ensembl chr  X:139,948,399...140,257,072 		JBrowse link
G Col5a2 collagen, type V, alpha 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:45,413,491...45,542,442
Ensembl chr 1:45,413,481...45,542,442 		JBrowse link
G Col5a3 collagen, type V, alpha 3 acts_upstream_of_or_within
involved_in		 ISS
IBA		 (PMID:10722718) MGI
GO_Central		 PMID:10722718 GO_REF:0000033 NCBI chr 9:20,681,353...20,726,363
Ensembl chr 9:20,681,346...20,726,363 		JBrowse link
G Col6a4 collagen, type VI, alpha 4 involved_in IDA
IBA		 (PMID:26571399) MGI
GO_Central		 PMID:26571399 GO_REF:0000033 NCBI chr 9:105,867,284...105,975,729
Ensembl chr 9:105,866,653...105,973,982 		JBrowse link
G Col6a5 collagen, type VI, alpha 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:105,733,269...105,839,743
Ensembl chr 9:105,733,277...105,837,842 		JBrowse link
G Col6a6 collagen, type VI, alpha 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:105,566,616...105,705,413
Ensembl chr 9:105,565,008...105,705,359 		JBrowse link
G Col7a1 collagen, type VII, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:108,782,654...108,813,943
Ensembl chr 9:108,782,654...108,813,943 		JBrowse link
G Col8a1 collagen, type VIII, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:57,444,619...57,575,100
Ensembl chr16:57,444,621...57,575,100 		JBrowse link
G Col8a2 collagen, type VIII, alpha 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:126,180,613...126,208,123
Ensembl chr 4:126,180,586...126,208,123 		JBrowse link
G Col9a1 collagen, type IX, alpha 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:24,216,670...24,291,819
Ensembl chr 1:24,216,691...24,291,765 		JBrowse link
G Col9a2 collagen, type IX, alpha 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:120,896,763...120,912,522
Ensembl chr 4:120,896,582...120,912,519 		JBrowse link
G Col9a3 collagen, type IX, alpha 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:180,239,895...180,263,985
Ensembl chr 2:180,239,583...180,263,982 		JBrowse link
G Colq collagen like tail subunit of asymmetric acetylcholinesterase involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:31,245,039...31,299,820
Ensembl chr14:31,245,039...31,313,300 		JBrowse link
G Crispld2 cysteine-rich secretory protein LCCL domain containing 2 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 8:120,719,177...120,779,533
Ensembl chr 8:120,719,177...120,779,532 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within IMP (PMID:21148564) MGI PMID:21148564 NCBI chr 8:68,809,433...69,188,270
Ensembl chr 8:68,809,433...69,187,798 		JBrowse link
G Dmp1 dentin matrix protein 1 involved_in
acts_upstream_of_or_within		 IBA
IDA		 (PMID:18757743) GO_Central
MGI		 PMID:18757743 GO_REF:0000033 NCBI chr 5:104,345,441...104,361,968
Ensembl chr 5:104,350,479...104,361,968 		JBrowse link
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 acts_upstream_of_or_within IMP (PMID:21972064) MGI PMID:21972064 NCBI chr 5:29,940,896...29,991,476
Ensembl chr 5:29,940,686...30,023,132 		JBrowse link
G Ecm2 extracellular matrix protein 2, female organ and adipocyte specific acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr13:49,658,259...49,686,267
Ensembl chr13:49,658,286...49,686,265 		JBrowse link
G Egfl6 EGF-like-domain, multiple 6 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr  X:165,306,003...165,368,712
Ensembl chr  X:165,306,003...165,368,716 		JBrowse link
G Egflam EGF-like, fibronectin type III and laminin G domains acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr15:7,235,598...7,428,203
Ensembl chr15:7,235,601...7,427,876 		JBrowse link
G Elf3 E74-like factor 3 acts_upstream_of_or_within IMP (PMID:11984530) MGI PMID:11984530 NCBI chr 1:135,181,312...135,186,210
Ensembl chr 1:135,181,313...135,186,306 		JBrowse link
G Eln elastin acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 5:134,731,449...134,776,300
Ensembl chr 5:134,731,447...134,776,177 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 5:31,070,729...31,078,623
Ensembl chr 5:31,070,746...31,078,621 		JBrowse link
G Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2 acts_upstream_of_or_within IMP (PMID:9651581) MGI PMID:9651581 NCBI chr 7:19,115,942...19,129,619
Ensembl chr 7:19,115,935...19,129,619 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within IGI (PMID:22981861) MGI PMID:22981861 NCBI chr14:45,520,544...45,556,029
Ensembl chr14:45,520,544...45,556,228 		JBrowse link
G Ero1b endoplasmic reticulum oxidoreductase 1 beta acts_upstream_of_or_within IGI (PMID:22981861) MGI PMID:22981861 NCBI chr13:12,580,701...12,624,422
Ensembl chr13:12,580,755...12,626,285 		JBrowse link
G Fbln1 fibulin 1 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr15:85,090,150...85,170,495
Ensembl chr15:85,090,150...85,170,736 		JBrowse link
G Fbln5 fibulin 5 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr12:101,712,820...101,785,541
Ensembl chr12:101,712,824...101,785,314 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within IDA (PMID:31296900) MGI PMID:31296900 NCBI chr 7:16,543,192...16,550,657
Ensembl chr 7:16,543,171...16,550,657 		JBrowse link
G Fn1 fibronectin 1 involved_in ISO RGD
GO_Central		 PMID:12388756 GO_REF:0000096 RGD:1358623 NCBI chr 1:71,624,632...71,692,439
Ensembl chr 1:71,624,679...71,692,359 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IGI (PMID:16439479) MGI PMID:16439479 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within IGI
IMP		 (PMID:16439479) MGI PMID:16439479 NCBI chr13:31,809,686...31,815,390
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Gfap glial fibrillary acidic protein acts_upstream_of_or_within IMP (PMID:11487638) MGI PMID:11487638 NCBI chr11:102,778,162...102,791,368
Ensembl chr11:102,778,162...102,791,738 		JBrowse link
G Gfod2 glucose-fructose oxidoreductase domain containing 2 involved_in
acts_upstream_of_or_within		 IBA
IDA		 (PMID:18757743) GO_Central
MGI		 PMID:18757743 GO_REF:0000033 NCBI chr 8:106,440,676...106,485,299
Ensembl chr 8:106,440,486...106,485,296 		JBrowse link
G Hpse2 heparanase 2 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:25510506) MGI
GO_Central		 PMID:25510506 GO_REF:0000033 NCBI chr19:42,774,980...43,376,913
Ensembl chr19:42,774,978...43,376,794 		JBrowse link
G Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 2:93,863,042...93,988,254
Ensembl chr 2:93,863,034...93,988,309 		JBrowse link
G Hspg2 perlecan (heparan sulfate proteoglycan 2) acts_upstream_of_or_within IMP (PMID:10579729) MGI PMID:10579729 NCBI chr 4:137,196,062...137,297,941
Ensembl chr 4:137,196,080...137,297,941 		JBrowse link
G Ibsp integrin binding sialoprotein acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr 5:104,447,153...104,459,338
Ensembl chr 5:104,447,037...104,459,335 		JBrowse link
G Idua iduronidase, alpha-L acts_upstream_of_or_within IMP (PMID:25410057) MGI PMID:25410057 NCBI chr 5:108,808,197...108,833,312
Ensembl chr 5:108,808,197...108,832,423 		JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 acts_upstream_of_or_within IMP (PMID:32265257) MGI PMID:32265257 NCBI chr 9:80,215,467...80,347,707
Ensembl chr 9:80,220,612...80,347,534 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within IMP (PMID:32265257) MGI PMID:32265257 NCBI chr16:56,019,447...56,094,119
Ensembl chr16:56,024,676...56,094,119 		JBrowse link
G Itga8 integrin alpha 8 acts_upstream_of_or_within IMP (PMID:10742111) MGI PMID:10742111 NCBI chr 2:12,111,443...12,306,755
Ensembl chr 2:12,111,443...12,306,733 		JBrowse link
G Itih1 inter-alpha trypsin inhibitor, heavy chain 1 acts_upstream_of_or_within IDA (PMID:17675295) MGI PMID:17675295 NCBI chr14:30,651,137...30,665,246
Ensembl chr14:30,651,137...30,665,246 		JBrowse link
G Kazald1 Kazal-type serine peptidase inhibitor domain 1 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr19:45,063,404...45,067,728
Ensembl chr19:45,063,680...45,067,728 		JBrowse link
G Lgals3 lectin, galactose binding, soluble 3 acts_upstream_of_or_within IGI (PMID:15800063) MGI PMID:15800063 NCBI chr14:47,611,317...47,623,624
Ensembl chr14:47,605,208...47,623,617 		JBrowse link
G Mansc4 MANSC domain containing 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:146,976,560...146,988,530
Ensembl chr 6:146,976,558...146,988,530 		JBrowse link
G Marco macrophage receptor with collagenous structure involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:120,402,267...120,432,753
Ensembl chr 1:120,402,267...120,432,753 		JBrowse link
G Matn1 matrilin 1, cartilage matrix protein involved_in NAS (PMID:10397755), (PMID:10660556) ComplexPortal PMID:10397755 PMID:10660556 NCBI chr 4:130,671,696...130,682,787
Ensembl chr 4:130,671,696...130,682,786 		JBrowse link
G Matn2 matrilin 2 involved_in NAS (PMID:10224097) ComplexPortal PMID:10224097 NCBI chr15:34,306,827...34,436,388
Ensembl chr15:34,306,823...34,436,419 		JBrowse link
G Matn3 matrilin 3 involved_in NAS
IDA		 (PMID:10660556) ComplexPortal PMID:10660556 NCBI chr12:8,997,929...9,022,028
Ensembl chr12:8,997,929...9,022,028 		JBrowse link
G Matn4 matrilin 4 involved_in NAS (PMID:11279097) ComplexPortal PMID:11279097 NCBI chr 2:164,231,313...164,247,080
Ensembl chr 2:164,231,313...164,247,080 		JBrowse link
G Mia MIA SH3 domain containing involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:11839810) GO_Central
MGI		 PMID:11839810 GO_REF:0000033 NCBI chr 7:26,879,166...26,880,574
Ensembl chr 7:26,879,167...26,880,582 		JBrowse link
G Mmp10 matrix metallopeptidase 10 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,502,343...7,510,243
Ensembl chr 9:7,502,353...7,510,241 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:18622425) MGI
GO_Central		 PMID:18622425 GO_REF:0000033 NCBI chr10:75,759,056...75,768,336
Ensembl chr10:75,759,056...75,772,330 		JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,344,397...7,360,461
Ensembl chr 9:7,344,381...7,369,499 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,272,514...7,283,333
Ensembl chr 9:7,272,514...7,283,331 		JBrowse link
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:54,669,055...54,679,913
Ensembl chr14:54,669,069...54,682,821 		JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:96,078,924...96,100,921
Ensembl chr 8:96,078,896...96,101,708 		JBrowse link
G Mmp16 matrix metallopeptidase 16 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:17,853,072...18,117,479
Ensembl chr 4:17,852,893...18,119,145 		JBrowse link
G Mmp17 matrix metallopeptidase 17 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:129,661,215...129,688,163
Ensembl chr 5:129,661,233...129,688,163 		JBrowse link
G Mmp19 matrix metallopeptidase 19 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:128,626,779...128,636,696
Ensembl chr10:128,626,779...128,636,693 		JBrowse link
G Mmp1a matrix metallopeptidase 1a (interstitial collagenase) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,464,141...7,476,870
Ensembl chr 9:7,464,141...7,476,857 		JBrowse link
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,367,670...7,388,026
Ensembl chr 9:7,368,239...7,388,047 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:93,553,920...93,580,049
Ensembl chr 8:93,553,919...93,580,048 		JBrowse link
G Mmp20 matrix metallopeptidase 20 (enamelysin) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,628,232...7,674,969
Ensembl chr 9:7,628,232...7,674,980 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:133,275,999...133,281,790
Ensembl chr 7:133,275,999...133,281,790 		JBrowse link
G Mmp23 matrix metallopeptidase 23 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:155,735,111...155,738,982
Ensembl chr 4:155,735,112...155,737,841 		JBrowse link
G Mmp24 matrix metallopeptidase 24 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:155,617,262...155,660,286
Ensembl chr 2:155,617,262...155,660,286 		JBrowse link
G Mmp25 matrix metallopeptidase 25 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:23,847,289...23,864,006
Ensembl chr17:23,847,285...23,864,251 		JBrowse link
G Mmp27 matrix metallopeptidase 27 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,571,397...7,581,886
Ensembl chr 9:7,571,397...7,581,886 		JBrowse link
G Mmp28 matrix metallopeptidase 28 (epilysin) involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:83,331,594...83,353,890
Ensembl chr11:83,331,594...83,353,897 		JBrowse link
G Mmp3 matrix metallopeptidase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,445,845...7,455,975
Ensembl chr 9:7,445,822...7,455,975 		JBrowse link
G Mmp7 matrix metallopeptidase 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,692,095...7,699,587
Ensembl chr 9:7,692,091...7,699,587 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:7,558,430...7,568,487
Ensembl chr 9:7,558,457...7,568,486 		JBrowse link
G Mmp9 matrix metallopeptidase 9 acts_upstream_of_or_within
involved_in		 IMP
IBA
IGI		 (PMID:15800063) MGI
GO_Central		 PMID:15800063 GO_REF:0000033 NCBI chr 2:164,782,246...164,797,770
Ensembl chr 2:164,782,700...164,797,770 		JBrowse link
G Mpzl3 myelin protein zero-like 3 acts_upstream_of_or_within IMP (PMID:15482472) MGI PMID:15482472 NCBI chr 9:44,966,479...44,988,735
Ensembl chr 9:44,966,484...44,988,734 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IMP (PMID:16554364) MGI PMID:16554364 NCBI chr10:107,318,769...107,322,787
Ensembl chr10:107,318,769...107,321,995 		JBrowse link
G Ndnf neuron-derived neurotrophic factor acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr 6:65,648,595...65,689,307
Ensembl chr 6:65,648,574...65,689,310 		JBrowse link
G Nepn nephrocan acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr10:52,264,961...52,280,707
Ensembl chr10:52,265,068...52,280,721 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within IMP (PMID:16835260) MGI PMID:16835260 NCBI chr11:79,223,541...79,472,435
Ensembl chr11:79,230,519...79,472,438 		JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 acts_upstream_of_or_within IMP (PMID:10586052) MGI PMID:10586052 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824 		JBrowse link
G Nid1 nidogen 1 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr13:13,612,252...13,686,849
Ensembl chr13:13,612,136...13,686,854 		JBrowse link
G Nox1 NADPH oxidase 1 acts_upstream_of_or_within IMP (PMID:16386251) MGI PMID:16386251 NCBI chr  X:132,987,170...133,038,455
Ensembl chr  X:132,987,170...133,122,705 		JBrowse link
G Nphp3 nephronophthisis 3 (adolescent) acts_upstream_of_or_within IMP (PMID:7539536) MGI PMID:7539536 NCBI chr 9:103,879,743...103,921,010
Ensembl chr 9:103,879,743...103,921,017 		JBrowse link
G Npnt nephronectin acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 3:132,587,506...132,656,052
Ensembl chr 3:132,587,506...132,656,052 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within IMP (PMID:16424942) MGI PMID:16424942 NCBI chr10:42,437,959...42,459,721
Ensembl chr10:42,437,959...42,459,628 		JBrowse link
G Olfml2a olfactomedin-like 2A acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 2:38,821,992...38,850,597
Ensembl chr 2:38,821,990...38,853,765 		JBrowse link
G Olfml2b olfactomedin-like 2B acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr 1:170,472,101...170,510,356
Ensembl chr 1:170,472,101...170,510,358 		JBrowse link
G Otol1 otolin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:69,914,946...69,936,041
Ensembl chr 3:69,914,946...69,936,041 		JBrowse link
G Papln papilin, proteoglycan-like sulfated glycoprotein involved_in IEA InterPro GO_REF:0000002 NCBI chr12:83,809,769...83,841,914
Ensembl chr12:83,810,408...83,839,156 		JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide acts_upstream_of_or_within IMP (PMID:15543606) MGI PMID:15543606 NCBI chr 5:75,311,988...75,358,867
Ensembl chr 5:75,312,953...75,358,876 		JBrowse link
G Pomt1 protein-O-mannosyltransferase 1 acts_upstream_of_or_within IMP (PMID:15383666) MGI PMID:15383666 NCBI chr 2:32,126,321...32,145,017
Ensembl chr 2:32,126,602...32,145,017 		JBrowse link
G Postn periostin, osteoblast specific factor acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:16314533) MGI
GO_Central		 PMID:16314533 GO_REF:0000033 NCBI chr 3:54,266,688...54,298,462
Ensembl chr 3:54,268,530...54,298,458 		JBrowse link
G Prdx4 peroxiredoxin 4 acts_upstream_of_or_within IGI (PMID:22981861) MGI PMID:22981861 NCBI chr  X:154,106,914...154,125,268
Ensembl chr  X:154,106,914...154,123,750 		JBrowse link
G Ptk2 PTK2 protein tyrosine kinase 2 acts_upstream_of_or_within IMP (PMID:14642275) MGI PMID:14642275 NCBI chr15:73,076,951...73,297,192
Ensembl chr15:73,076,951...73,295,129 		JBrowse link
G Ptx3 pentraxin related gene acts_upstream_of_or_within IDA
IMP		 (PMID:17675295) MGI PMID:17675295 NCBI chr 3:66,127,308...66,133,227
Ensembl chr 3:66,127,331...66,133,226 		JBrowse link
G Pxdn peroxidasin involved_in ISO
IDA		 (PMID:19590037) GO_Central
UniProt		 PMID:19590037 GO_REF:0000119 NCBI chr12:29,986,641...30,067,657
Ensembl chr12:29,987,607...30,067,657 		JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:11747814) GO_Central
MGI		 PMID:11747814 GO_REF:0000033 NCBI chr 4:43,875,521...43,944,806
Ensembl chr 4:43,875,530...43,944,806 		JBrowse link
G Rxfp1 relaxin/insulin-like family peptide receptor 1 acts_upstream_of_or_within IMP (PMID:15256493) MGI PMID:15256493 NCBI chr 3:79,548,910...79,645,258
Ensembl chr 3:79,548,918...79,645,187 		JBrowse link
G Scara3 scavenger receptor class A, member 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:66,156,844...66,191,427
Ensembl chr14:66,156,843...66,191,384 		JBrowse link
G Serac1 serine active site containing 1 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr17:6,090,846...6,130,064
Ensembl chr17:6,092,471...6,130,016 		JBrowse link
G Serpinb5 serine (or cysteine) peptidase inhibitor, clade B, member 5 acts_upstream_of_or_within IMP (PMID:18593913) MGI PMID:18593913 NCBI chr 1:106,788,905...106,811,078
Ensembl chr 1:106,788,903...106,811,078 		JBrowse link
G Slc39a8 solute carrier family 39 (metal ion transporter), member 8 acts_upstream_of ISO
IMP		 (PMID:29337306) GO_Central
UniProt		 PMID:29337306 GO_REF:0000119 NCBI chr 3:135,522,644...135,594,333
Ensembl chr 3:135,531,040...135,594,333 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within IMP (PMID:18267097) MGI PMID:18267097 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Smoc1 SPARC related modular calcium binding 1 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr12:81,073,582...81,233,188
Ensembl chr12:81,073,582...81,233,188 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr17:14,499,768...14,625,052
Ensembl chr17:14,499,768...14,625,052 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (PMID:24191021)
(PMID:17350610)		 MGI PMID:17350610 PMID:24191021 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Spint1 serine protease inhibitor, Kunitz type 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:17174946) MGI
GO_Central		 PMID:17174946 GO_REF:0000033 NCBI chr 2:119,067,841...119,079,995
Ensembl chr 2:119,067,843...119,080,008 		JBrowse link
G Spock2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr10:59,942,079...59,971,020
Ensembl chr10:59,942,041...59,971,020 		JBrowse link
G Tfip11 tuftelin interacting protein 11 involved_in NAS (PMID:11063033) UniProt PMID:11063033 NCBI chr 5:112,474,235...112,485,939
Ensembl chr 5:112,474,224...112,485,939 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within IMP (PMID:11784073), (PMID:15528466) MGI PMID:11784073 PMID:15528466 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfbi transforming growth factor, beta induced acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr13:56,757,399...56,787,172
Ensembl chr13:56,757,336...56,787,375 		JBrowse link
G Tnf tumor necrosis factor acts_upstream_of_or_within IDA (PMID:15381731) MGI PMID:15381731 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
G Tnfrsf11b tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr15:54,114,014...54,141,700
Ensembl chr15:54,114,015...54,141,880 		JBrowse link
G Tnr tenascin R acts_upstream_of_or_within IMP (PMID:10341229), (PMID:11077416), (PMID:16870730) MGI PMID:10341229 PMID:11077416 PMID:16870730 NCBI chr 1:159,351,170...159,759,299
Ensembl chr 1:159,351,339...159,759,299 		JBrowse link
G Tnxb tenascin XB acts_upstream_of_or_within IMP (PMID:15242785) MGI PMID:15242785 NCBI chr17:34,879,427...34,938,789
Ensembl chr17:34,879,431...34,938,789 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IMP (PMID:16537898) MGI PMID:16537898 NCBI chr 6:113,600,955...113,608,595
Ensembl chr 6:113,600,920...113,608,594 		JBrowse link
G Vit vitrin acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:18757743) MGI
GO_Central		 PMID:18757743 GO_REF:0000033 NCBI chr17:78,815,480...78,934,838
Ensembl chr17:78,815,493...78,934,837 		JBrowse link
G Vtn vitronectin acts_upstream_of_or_within IDA (PMID:18757743) MGI PMID:18757743 NCBI chr11:78,389,946...78,393,151
Ensembl chr11:78,389,917...78,393,150 		JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 acts_upstream_of_or_within IMP
IDA		 (PMID:19279005)
(PMID:18757743)		 MGI PMID:18757743 PMID:19279005 NCBI chr 4:155,852,952...155,859,042
Ensembl chr 4:155,852,606...155,859,155 		JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within IMP (PMID:35181734) MGI PMID:35181734 NCBI chr 9:74,017,608...74,190,485
Ensembl chr 9:74,017,638...74,190,590 		JBrowse link
G Wnt3a wingless-type MMTV integration site family, member 3A acts_upstream_of_or_within IDA (PMID:17943183) MGI PMID:17943183 NCBI chr11:59,138,859...59,181,579
Ensembl chr11:59,138,859...59,181,578 		JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin B1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:31,315,230...31,379,643
Ensembl chr12:31,315,233...31,379,643 		JBrowse link
G Lamb2 laminin, beta 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:108,357,080...108,367,729
Ensembl chr 9:108,356,935...108,367,729 		JBrowse link
G Lamb3 laminin, beta 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:192,976,661...193,026,186
Ensembl chr 1:192,890,007...193,026,186 		JBrowse link
G Megf9 multiple EGF-like-domains 9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:70,350,164...70,453,165
Ensembl chr 4:70,345,302...70,453,232 		JBrowse link
G Ntn4 netrin 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:93,476,911...93,581,834
Ensembl chr10:93,476,543...93,583,069 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within IMP (PMID:16467571) MGI PMID:16467571 NCBI chr 5:137,015,873...137,025,500
Ensembl chr 5:137,015,873...137,025,502 		JBrowse link
G Pxdn peroxidasin involved_in
acts_upstream_of		 IDA
ISO
IMP		 (PMID:22842973)
(PMID:25708780), (PMID:32571911)		 UniProt
GO_Central		 PMID:22842973 PMID:25708780 PMID:32571911 GO_REF:0000119 NCBI chr12:29,986,641...30,067,657
Ensembl chr12:29,987,607...30,067,657 		JBrowse link
G Ramp2 receptor (calcitonin) activity modifying protein 2 involved_in IMP (PMID:18097473) UniProt PMID:18097473 NCBI chr11:101,137,160...101,139,076
Ensembl chr11:101,136,854...101,150,372 		JBrowse link
basement membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cma1 chymase 1, mast cell involved_in ISO GO_Central GO_REF:0000119 NCBI chr14:56,178,908...56,182,132
Ensembl chr14:56,178,908...56,182,132 		JBrowse link
G Ctss cathepsin S involved_in IMP
ISO		 (PMID:22952693) BHF-UCL
GO_Central		 PMID:22952693 GO_REF:0000119 NCBI chr 3:95,434,097...95,463,716
Ensembl chr 3:95,434,097...95,463,714 		JBrowse link
G Hpn hepsin involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:30,798,150...30,814,751
Ensembl chr 7:30,798,150...30,814,715 		JBrowse link
basement membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1, caveolae protein acts_upstream_of_or_within IMP (PMID:11884617) MGI PMID:11884617 NCBI chr 6:17,306,387...17,341,323
Ensembl chr 6:17,306,334...17,341,451 		JBrowse link
G Cav2 caveolin 2 acts_upstream_of_or_within IMP (PMID:11884617) MGI PMID:11884617 NCBI chr 6:17,281,184...17,289,129
Ensembl chr 6:17,281,184...17,289,114 		JBrowse link
G Col3a1 collagen, type III, alpha 1 involved_in IMP (PMID:22235340) MGI PMID:22235340 NCBI chr 1:45,350,698...45,388,866
Ensembl chr 1:45,350,698...45,388,866 		JBrowse link
G Col4a1 collagen, type IV, alpha 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:11,248,423...11,362,889
Ensembl chr 8:11,248,423...11,362,826 		JBrowse link
G Col6a1 collagen, type VI, alpha 1 acts_upstream_of_or_within IMP (PMID:25158062) MGI PMID:25158062 NCBI chr10:76,544,626...76,561,869
Ensembl chr10:76,544,626...76,562,002 		JBrowse link
G Dag1 dystroglycan 1 acts_upstream_of_or_within IMP (PMID:23217742) MGI PMID:23217742 NCBI chr 9:108,082,060...108,141,176
Ensembl chr 9:108,081,833...108,141,157 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (PMID:26024086) MGI PMID:26024086 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
G Fermt1 fermitin family member 1 involved_in IMP (PMID:24681597) CAFA PMID:24681597 NCBI chr 2:132,746,097...132,787,956
Ensembl chr 2:132,746,309...132,787,826 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within IMP (PMID:28039900) MGI PMID:28039900 NCBI chr 7:16,543,192...16,550,657
Ensembl chr 7:16,543,171...16,550,657 		JBrowse link
G Fktn fukutin acts_upstream_of_or_within IMP (PMID:29360985) MGI PMID:29360985 NCBI chr 4:53,713,745...53,765,785
Ensembl chr 4:53,713,998...53,777,890 		JBrowse link
G Flrt2 fibronectin leucine rich transmembrane protein 2 involved_in IMP (PMID:21350012) UniProt PMID:21350012 NCBI chr12:95,658,780...95,751,989
Ensembl chr12:95,659,000...95,751,989 		JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within IMP (PMID:9811848) MGI PMID:9811848 NCBI chr17:89,292,380...89,508,103
Ensembl chr17:89,292,380...89,508,103 		JBrowse link
G Gas2 growth arrest specific 2 acts_upstream_of_or_within IMP (PMID:27734842) MGI PMID:27734842 NCBI chr 7:51,511,560...51,644,753
Ensembl chr 7:51,511,763...51,644,723 		JBrowse link
G Hmcn1 hemicentin 1 involved_in IMP (PMID:34504132) UniProt PMID:34504132 NCBI chr 1:150,438,251...150,869,568
Ensembl chr 1:150,438,275...150,869,186 		JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) involved_in IMP (PMID:24681597) CAFA PMID:24681597 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within IMP (PMID:12140558), (PMID:21970971) MGI PMID:12140558 PMID:21970971 NCBI chr 8:73,541,227...74,080,164
Ensembl chr 8:73,541,227...74,080,168 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within IMP (PMID:18622425) MGI PMID:18622425 NCBI chr10:75,759,056...75,768,336
Ensembl chr10:75,759,056...75,772,330 		JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within IMP (PMID:16436605) MGI PMID:16436605 NCBI chr11:63,019,808...63,050,373
Ensembl chr11:63,019,808...63,050,373 		JBrowse link
G Pomgnt1 protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase acts_upstream_of_or_within IMP (PMID:21970971) MGI PMID:21970971 NCBI chr 4:116,007,700...116,017,041
Ensembl chr 4:115,981,037...116,017,046 		JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 acts_upstream_of_or_within IMP (PMID:21970971) MGI PMID:21970971 NCBI chr12:87,153,635...87,194,742
Ensembl chr12:87,153,635...87,194,742 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IMP (PMID:33144400) MGI PMID:33144400 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Pxdn peroxidasin involved_in IMP (PMID:24895407), (PMID:28424209) UniProt PMID:24895407 PMID:28424209 NCBI chr12:29,986,641...30,067,657
Ensembl chr12:29,987,607...30,067,657 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within IMP (PMID:21069829) MGI PMID:21069829 NCBI chr 7:140,437,310...140,443,644
Ensembl chr 7:140,436,870...140,444,285 		JBrowse link
G Spint2 serine protease inhibitor, Kunitz type 2 acts_upstream_of_or_within IMP (PMID:19592578) MGI PMID:19592578 NCBI chr 7:28,955,755...28,981,484
Ensembl chr 7:28,955,748...28,981,337 		JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (PMID:16186342) MGI PMID:16186342 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
biofilm matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsg cathepsin G involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr14:56,337,342...56,340,031
Ensembl chr14:56,337,338...56,340,031 		JBrowse link
collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within IMP (PMID:3070812) MGI PMID:3070812 NCBI chr 7:78,702,974...78,764,847
Ensembl chr 7:78,703,231...78,764,847 		JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif 12 involved_in IGI (PMID:29618652) MGI PMID:29618652 NCBI chr15:11,064,781...11,349,321
Ensembl chr15:11,064,876...11,349,317 		JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif 14 acts_upstream_of_or_within IDA (PMID:11741898) MGI PMID:11741898 NCBI chr10:61,032,886...61,109,447
Ensembl chr10:61,032,891...61,109,217 		JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif 19 involved_in IMP (PMID:31844321) BHF-UCL PMID:31844321 NCBI chr18:58,967,819...59,186,754
Ensembl chr18:58,969,739...59,187,132 		JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif 2 acts_upstream_of_or_within IMP (PMID:16556917) MGI PMID:16556917 NCBI chr11:50,492,912...50,698,400
Ensembl chr11:50,492,911...50,698,400 		JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 involved_in IGI (PMID:29618652) MGI PMID:29618652 NCBI chr 9:90,041,420...90,082,155
Ensembl chr 9:90,045,122...90,090,124 		JBrowse link
G Antxr2 anthrax toxin receptor 2 acts_upstream_of_or_within IMP
IGI		 (PMID:28604699) MGI PMID:28604699 NCBI chr 5:98,032,547...98,178,876
Ensembl chr 5:98,030,642...98,178,902 		JBrowse link
G Anxa2 annexin A2 acts_upstream_of_or_within IMP (PMID:14702107) MGI PMID:14702107 NCBI chr 9:69,360,978...69,399,074
Ensembl chr 9:69,360,902...69,399,077 		JBrowse link
G Atp7a ATPase, copper transporting, alpha polypeptide acts_upstream_of_or_within IMP (PMID:4808708)
(PMID:16338116)
(PMID:8096378)
(PMID:20889), (PMID:8895222)		 MGI PMID:20889 PMID:4808708 PMID:8096378 PMID:8895222 PMID:16338116 NCBI chr  X:105,070,830...105,171,766
Ensembl chr  X:105,070,882...105,168,532 		JBrowse link
G Col11a1 collagen, type XI, alpha 1 acts_upstream_of_or_within IGI
IMP		 (PMID:17029294), (PMID:21467034)
(PMID:17029294), (PMID:17683922), (PMID:21467034), (PMID:3070812), (PMID:4100752), (PMID:4110409), (PMID:7859283)		 MGI PMID:3070812 PMID:4100752 PMID:4110409 PMID:7859283 PMID:17029294 More... NCBI chr 3:113,823,933...114,014,405
Ensembl chr 3:113,824,189...114,014,367 		JBrowse link
G Col11a2 collagen, type XI, alpha 2 acts_upstream_of_or_within
involved_in		 IMP
IBA
ISO		 (PMID:10581026), (PMID:11668593) MGI
GO_Central		 PMID:10581026 PMID:11668593 GO_REF:0000033 GO_REF:0000119 NCBI chr17:34,257,462...34,285,659
Ensembl chr17:34,258,411...34,285,659 		JBrowse link
G Col14a1 collagen, type XIV, alpha 1 acts_upstream_of_or_within IMP (PMID:22906538) MGI PMID:22906538 NCBI chr15:55,171,040...55,384,199
Ensembl chr15:55,171,146...55,384,199 		JBrowse link
G Col1a1 collagen, type I, alpha 1 involved_in NAS
ISO		 (PMID:1916105) ComplexPortal
GO_Central		 PMID:1916105 GO_REF:0000119 NCBI chr11:94,827,050...94,843,868
Ensembl chr11:94,827,050...94,843,868 		JBrowse link
G Col1a2 collagen, type I, alpha 2 involved_in NAS
ISO		 (PMID:1916105) ComplexPortal
GO_Central		 PMID:1916105 GO_REF:0000119 NCBI chr 6:4,505,618...4,541,543
Ensembl chr 6:4,504,814...4,541,544 		JBrowse link
G Col2a1 collagen, type II, alpha 1 acts_upstream_of_or_within
involved_in		 IMP
ISO		 (PMID:9022054)
(PMID:11171689), (PMID:7590256), (PMID:9832566), (PMID:9915573)
(PMID:3070812), (PMID:7276808), (PMID:8989518)		 MGI
GO_Central		 PMID:3070812 PMID:7276808 PMID:7590256 PMID:8989518 PMID:9022054 More... GO_REF:0000119 NCBI chr15:97,873,483...97,902,525
Ensembl chr15:97,873,483...97,902,576 		JBrowse link
G Col3a1 collagen, type III, alpha 1 acts_upstream_of_or_within
involved_in		 IMP
ISO		 (PMID:9050868)
(PMID:24820199)
(PMID:20587693), (PMID:31655293)
(PMID:29551664)		 MGI
GO_Central		 PMID:9050868 PMID:20587693 PMID:24820199 PMID:29551664 PMID:31655293 GO_REF:0000119 NCBI chr 1:45,350,698...45,388,866
Ensembl chr 1:45,350,698...45,388,866 		JBrowse link
G Col5a1 collagen, type V, alpha 1 acts_upstream_of_or_within
involved_in		 IGI
IBA
ISO
IMP		 (PMID:17029294), (PMID:21467034)
(PMID:15383546), (PMID:16492673), (PMID:17029294)		 MGI
GO_Central		 PMID:15383546 PMID:16492673 PMID:17029294 PMID:21467034 GO_REF:0000033 GO_REF:0000119 NCBI chr 2:27,776,393...27,929,522
Ensembl chr 2:27,776,437...27,929,526 		JBrowse link
G Col5a2 collagen, type V, alpha 2 involved_in IMP
ISO		 (PMID:15199158) UniProt
GO_Central		 PMID:15199158 GO_REF:0000119 NCBI chr 1:45,413,491...45,542,442
Ensembl chr 1:45,413,481...45,542,442 		JBrowse link
G Col6a1 collagen, type VI, alpha 1 acts_upstream_of_or_within IMP
IGI		 (PMID:25158062)
(PMID:28604699)		 MGI PMID:25158062 PMID:28604699 NCBI chr10:76,544,626...76,561,869
Ensembl chr10:76,544,626...76,562,002 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within IMP (PMID:26746240)
(PMID:24312420)
(PMID:19808781)		 MGI PMID:19808781 PMID:24312420 PMID:26746240 NCBI chr 8:70,826,186...70,834,721
Ensembl chr 8:70,826,208...70,834,716 		JBrowse link
G Crtap cartilage associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:114,204,204...114,219,743
Ensembl chr 9:114,204,202...114,219,743 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IMP (PMID:23979599) UniProt PMID:23979599 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490 		JBrowse link
G Ddr2 discoidin domain receptor family, member 2 involved_in IMP (PMID:19900459) UniProt PMID:19900459 NCBI chr 1:169,799,874...169,938,525
Ensembl chr 1:169,799,876...169,938,331 		JBrowse link
G Dpt dermatopontin involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:12230512), (PMID:16877395) GO_Central
MGI		 PMID:12230512 PMID:16877395 GO_REF:0000033 NCBI chr 1:164,624,232...164,651,843
Ensembl chr 1:164,624,213...164,651,835 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within IMP (PMID:28106121) MGI PMID:28106121 NCBI chr14:45,520,544...45,556,029
Ensembl chr14:45,520,544...45,556,228 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (PMID:19850926) MGI PMID:19850926 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
G Fkbp10 FK506 binding protein 10 acts_upstream_of_or_within IMP (PMID:24777781)
(PMID:28206698)		 MGI PMID:24777781 PMID:28206698 NCBI chr11:100,306,520...100,315,666
Ensembl chr11:100,306,523...100,315,650 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IMP (PMID:10767326) MGI PMID:10767326 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IMP (PMID:10767326) MGI PMID:10767326 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within IMP (PMID:10660670) MGI PMID:10660670 NCBI chr 2:33,450,977...33,531,219
Ensembl chr 2:33,450,977...33,530,620 		JBrowse link
G Lox lysyl oxidase involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (PMID:26700732) RGD
GO_Central
MGI		 PMID:16432278 PMID:16804742 PMID:26700732 GO_REF:0000033 GO_REF:0000096 RGD:1600668 RGD:1600669 NCBI chr18:52,649,132...52,662,939
Ensembl chr18:52,649,139...52,662,939 		JBrowse link
G Loxl1 lysyl oxidase-like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:58,195,006...58,220,495
Ensembl chr 9:58,195,021...58,220,469 		JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in ISO
IBA
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr14:69,846,085...69,933,283
Ensembl chr14:69,846,517...69,933,283 		JBrowse link
G Loxl3 lysyl oxidase-like 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:83,011,186...83,029,547
Ensembl chr 6:83,011,154...83,029,543 		JBrowse link
G Loxl4 lysyl oxidase-like 4 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:42,580,718...42,601,326
Ensembl chr19:42,582,421...42,601,252 		JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within IMP (PMID:21606205) MGI PMID:21606205 NCBI chr 1:183,107,091...183,151,091
Ensembl chr 1:183,107,682...183,150,894 		JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within IMP (PMID:20696843) MGI PMID:20696843 NCBI chr18:6,934,966...7,004,779
Ensembl chr18:6,934,518...7,004,780 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within IMP (PMID:18622425) MGI PMID:18622425 NCBI chr10:75,759,056...75,768,336
Ensembl chr10:75,759,056...75,772,330 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within IMP (PMID:10383727) MGI PMID:10383727 NCBI chr11:79,223,541...79,472,435
Ensembl chr11:79,230,519...79,472,438 		JBrowse link
G Optc opticin involved_in IBA
IMP		 (PMID:29323130) GO_Central
UniProt		 PMID:29323130 GO_REF:0000033 NCBI chr 1:133,824,937...133,837,344
Ensembl chr 1:133,824,937...133,835,737 		JBrowse link
G P3h1 prolyl 3-hydroxylase 1 acts_upstream_of_or_within IMP (PMID:20363744) MGI PMID:20363744 NCBI chr 4:119,090,112...119,106,174
Ensembl chr 4:119,090,112...119,106,172 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (non-enzymatic) involved_in IBA
IMP		 (PMID:27119146) GO_Central
UniProt		 PMID:27119146 GO_REF:0000033 NCBI chr11:100,299,293...100,305,542
Ensembl chr11:100,299,282...100,305,662 		JBrowse link
G P4ha1 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:17135260) MGI
GO_Central		 PMID:17135260 GO_REF:0000033 NCBI chr10:59,159,019...59,209,126
Ensembl chr10:59,159,118...59,209,126 		JBrowse link
G P4ha3 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:99,934,637...99,968,908
Ensembl chr 7:99,934,727...99,968,906 		JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:147,994,210...148,021,233
Ensembl chr 4:147,994,210...148,021,224 		JBrowse link
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:92,421,828...92,490,481
Ensembl chr 9:92,424,276...92,490,481 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:16467571) MGI
GO_Central		 PMID:16467571 GO_REF:0000033 NCBI chr 5:137,015,873...137,025,500
Ensembl chr 5:137,015,873...137,025,502 		JBrowse link
G Pxdn peroxidasin involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr12:29,986,641...30,067,657
Ensembl chr12:29,987,607...30,067,657 		JBrowse link
G Scx scleraxis scleraxis bHLH transcription factor involved_in IMP (PMID:18802027) UniProt PMID:18802027 NCBI chr15:76,341,594...76,343,668
Ensembl chr15:76,341,652...76,343,658 		JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within IMP (PMID:28106121) MGI PMID:28106121 NCBI chr 4:134,265,203...134,279,477
Ensembl chr 4:134,265,203...134,279,477 		JBrowse link
G Serpinf2 serine (or cysteine) peptidase inhibitor, clade F, member 2 involved_in IMP (PMID:17958745) BHF-UCL PMID:17958745 NCBI chr11:75,322,562...75,330,327
Ensembl chr11:75,322,558...75,330,417 		JBrowse link
G Serpinh1 serine (or cysteine) peptidase inhibitor, clade H, member 1 involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:10995453)
(PMID:22492985)		 GO_Central
MGI		 PMID:10995453 PMID:22492985 GO_REF:0000033 NCBI chr 7:98,994,583...99,002,321
Ensembl chr 7:98,994,583...99,002,446 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IMP (PMID:19079247) MGI PMID:19079247 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IMP (PMID:15993878) MGI PMID:15993878 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931 		JBrowse link
G Tnxb tenascin XB acts_upstream_of_or_within IMP (PMID:15194424)
(PMID:11925569)		 MGI PMID:11925569 PMID:15194424 NCBI chr17:34,879,427...34,938,789
Ensembl chr17:34,879,431...34,938,789 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog acts_upstream_of_or_within IMP (PMID:27435297) MGI PMID:27435297 NCBI chr12:87,285,647...87,313,426
Ensembl chr12:87,285,642...87,313,030 		JBrowse link
G Vps33b vacuolar protein sorting 33B acts_upstream_of_or_within IMP (PMID:27435297) MGI PMID:27435297 NCBI chr 7:79,919,369...79,941,323
Ensembl chr 7:79,919,397...79,941,502 		JBrowse link
G Zfp469 zinc finger protein 469 acts_upstream_of_or_within IMP (PMID:34368841) MGI PMID:34368841 NCBI chr 8:122,770,009...122,999,389
Ensembl chr 8:122,985,359...122,999,389 		JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase, copper transporting, alpha polypeptide acts_upstream_of_or_within IMP (PMID:20889), (PMID:3385878), (PMID:937819)
(PMID:16338116)		 MGI PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 NCBI chr  X:105,070,830...105,171,766
Ensembl chr  X:105,070,882...105,168,532 		JBrowse link
G Col3a1 collagen, type III, alpha 1 involved_in IMP (PMID:24820199) MGI PMID:24820199 NCBI chr 1:45,350,698...45,388,866
Ensembl chr 1:45,350,698...45,388,866 		JBrowse link
G Efemp2 epidermal growth factor-containing fibulin-like extracellular matrix protein 2 acts_upstream_of_or_within
involved_in		 IMP
ISO
ISS		 (PMID:19855011)
(PMID:16478991), (PMID:20019329), (PMID:26178373), (PMID:26711913), (PMID:28508064)		 MGI
GO_Central
UniProt		 PMID:16478991 PMID:19855011 PMID:20019329 PMID:26178373 PMID:26711913 More... GO_REF:0000024 GO_REF:0000119 NCBI chr19:5,523,974...5,532,548
Ensembl chr19:5,523,982...5,532,545 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IMP (PMID:25056700) BHF-UCL PMID:25056700 NCBI chr 5:31,070,729...31,078,623
Ensembl chr 5:31,070,746...31,078,621 		JBrowse link
G Fbln5 fibulin 5 involved_in ISO
IBA
ISS
IMP		 (PMID:11805834), (PMID:11805835) GO_Central
UniProt		 PMID:11805834 PMID:11805835 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr12:101,712,820...101,785,541
Ensembl chr12:101,712,824...101,785,314 		JBrowse link
G Lox lysyl oxidase involved_in
acts_upstream_of_or_within		 ISO
IMP		 (PMID:12417550), (PMID:16192629)
(PMID:23413430)		 RGD
GO_Central
MGI		 PMID:12417550 PMID:16192629 PMID:16432278 PMID:23413430 GO_REF:0000096 RGD:1600669 NCBI chr18:52,649,132...52,662,939
Ensembl chr18:52,649,139...52,662,939 		JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in IMP (PMID:25713297) UniProt PMID:25713297 NCBI chr 7:27,004,566...27,039,142
Ensembl chr 7:27,004,561...27,037,117 		JBrowse link
G Mfap4 microfibrillar-associated protein 4 involved_in IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr11:61,376,257...61,379,536
Ensembl chr11:61,376,257...61,379,726 		JBrowse link
G Myh11 myosin, heavy polypeptide 11, smooth muscle involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr16:14,012,392...14,109,227
Ensembl chr16:14,012,399...14,109,236 		JBrowse link
G Thsd4 thrombospondin, type I, domain containing 4 acts_upstream_of_or_within IDA (PMID:19940141) MGI PMID:19940141 NCBI chr 9:59,874,214...60,429,394
Ensembl chr 9:59,874,214...60,429,329 		JBrowse link
G Tnxb tenascin XB involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:34,879,427...34,938,789
Ensembl chr17:34,879,431...34,938,789 		JBrowse link
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen, type I, alpha 2 acts_upstream_of_or_within IMP (PMID:22910579) MGI PMID:22910579 NCBI chr 6:4,505,618...4,541,543
Ensembl chr 6:4,504,814...4,541,544 		JBrowse link
G Col6a1 collagen, type VI, alpha 1 acts_upstream_of_or_within IMP (PMID:19114551) MGI PMID:19114551 NCBI chr10:76,544,626...76,561,869
Ensembl chr10:76,544,626...76,562,002 		JBrowse link
G Eln elastin involved_in IMP (PMID:20576933) BHF-UCL PMID:20576933 NCBI chr 5:134,731,449...134,776,300
Ensembl chr 5:134,731,447...134,776,177 		JBrowse link
G Fkbp10 FK506 binding protein 10 acts_upstream_of_or_within IMP (PMID:28774593) MGI PMID:28774593 NCBI chr11:100,306,520...100,315,666
Ensembl chr11:100,306,523...100,315,650 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISS UniProt GO_REF:0000024 NCBI chr 8:13,515,374...13,544,535
Ensembl chr 8:13,515,374...13,544,490 		JBrowse link
G Gpm6b glycoprotein m6b involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr  X:165,021,911...165,172,028
Ensembl chr  X:165,021,907...165,171,984 		JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 acts_upstream_of_or_within IMP (PMID:20181608) MGI PMID:20181608 NCBI chr 3:87,927,865...87,934,818
Ensembl chr 3:87,929,057...87,934,890 		JBrowse link
G Has1 hyaluronan synthase 1 involved_in IDA
IBA		 (PMID:10455188) UniProt
GO_Central		 PMID:10455188 GO_REF:0000033 NCBI chr17:18,063,588...18,075,450
Ensembl chr17:18,063,585...18,075,467 		JBrowse link
G Has2 hyaluronan synthase 2 involved_in IDA
IBA		 (PMID:10455188) UniProt
GO_Central		 PMID:10455188 GO_REF:0000033 NCBI chr15:56,529,023...56,557,942
Ensembl chr15:56,529,023...56,557,935 		JBrowse link
G Has3 hyaluronan synthase 3 involved_in IDA
IBA		 (PMID:10455188) UniProt
GO_Central		 PMID:10455188 GO_REF:0000033 NCBI chr 8:107,596,874...107,609,534
Ensembl chr 8:107,596,874...107,611,198 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IMP (PMID:19706528) MGI PMID:19706528 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Qsox1 quiescin Q6 sulfhydryl oxidase 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:155,653,901...155,688,645
Ensembl chr 1:155,651,775...155,688,635 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3, neutral acts_upstream_of_or_within IMP (PMID:22910579) MGI PMID:22910579 NCBI chr 8:106,979,180...107,064,597
Ensembl chr 8:106,979,180...107,064,620 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of IMP (PMID:20881014) MGI PMID:20881014 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IDA
ISO		 (PMID:19734317) BHF-UCL
GO_Central		 PMID:19734317 GO_REF:0000119 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 involved_in ISO positive regulation RGD
GO_Central		 PMID:18613219 GO_REF:0000096 RGD:2314619 NCBI chr10:24,471,340...24,474,581
Ensembl chr10:24,471,340...24,474,581 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 involved_in IDA (PMID:19767743) UniProt PMID:19767743 NCBI chr 2:91,812,673...91,854,515
Ensembl chr 2:91,812,673...91,854,847 		JBrowse link
G Eng endoglin involved_in ISO
IEA		 RGD
Ensembl
GO_Central		 PMID:15539634 GO_REF:0000096 GO_REF:0000107 RGD:1601032 NCBI chr 2:32,536,607...32,572,681
Ensembl chr 2:32,536,607...32,572,681 		JBrowse link
G Tmem38b transmembrane protein 38B acts_upstream_of_or_within IMP (PMID:27188440) MGI PMID:27188440 NCBI chr 4:53,825,988...53,862,019
Ensembl chr 4:53,826,045...53,862,019 		JBrowse link
G Zfp469 zinc finger protein 469 acts_upstream_of_or_within IMP (PMID:34368841) MGI PMID:34368841 NCBI chr 8:122,770,009...122,999,389
Ensembl chr 8:122,985,359...122,999,389 		JBrowse link
extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif 15 involved_in IMP (PMID:23233679) UniProt PMID:23233679 NCBI chr 9:30,810,451...30,833,853
Ensembl chr 9:30,810,451...30,833,748 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 involved_in IMP (PMID:23233679) UniProt PMID:23233679 NCBI chr16:85,655,045...85,698,013
Ensembl chr16:85,653,061...85,698,716 		JBrowse link
G Capg capping actin protein, gelsolin like NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chr 6:72,515,265...72,539,966
Ensembl chr 6:72,521,374...72,539,966 		JBrowse link
G Cma1 chymase 1, mast cell involved_in ISO GO_Central GO_REF:0000119 NCBI chr14:56,178,908...56,182,132
Ensembl chr14:56,178,908...56,182,132 		JBrowse link
G Eng endoglin involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:32,536,607...32,572,681
Ensembl chr 2:32,536,607...32,572,681 		JBrowse link
G Exoc8 exocyst complex component 8 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:125,617,038...125,624,444
Ensembl chr 8:125,619,847...125,624,444 		JBrowse link
G Flot1 flotillin 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr17:36,134,243...36,143,674
Ensembl chr17:36,134,122...36,143,683 		JBrowse link
G Gsn gelsolin NOT|involved_in ISO (PMID:24236012) UniProt PMID:24236012 NCBI chr 2:35,146,371...35,197,914
Ensembl chr 2:35,146,392...35,197,904 		JBrowse link
G Kif9 kinesin family member 9 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:110,306,062...110,354,242
Ensembl chr 9:110,306,026...110,354,247 		JBrowse link
G Klk4 kallikrein related-peptidase 4 (prostase, enamel matrix, prostate) acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:22243248) MGI
GO_Central		 PMID:22243248 GO_REF:0000033 NCBI chr 7:43,530,584...43,535,228
Ensembl chr 7:43,530,584...43,535,228 		JBrowse link
G Klk5 kallikrein related-peptidase 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:43,483,581...43,500,605
Ensembl chr 7:43,491,395...43,500,605 		JBrowse link
G Lamc1 laminin, gamma 1 involved_in ISO
ISS		 GO_Central
HGNC-UCL		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:153,094,668...153,208,532
Ensembl chr 1:153,094,668...153,208,532 		JBrowse link
G Lcp1 lymphocyte cytosolic protein 1 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr14:75,368,570...75,468,282
Ensembl chr14:75,368,541...75,468,282 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in ISO
IMP		 (PMID:17987127) GO_Central
UniProt		 PMID:17987127 GO_REF:0000119 NCBI chr 9:7,272,514...7,283,333
Ensembl chr 9:7,272,514...7,283,331 		JBrowse link
G Mmp20 matrix metallopeptidase 20 (enamelysin) acts_upstream_of_or_within IMP (PMID:22243248) MGI PMID:22243248 NCBI chr 9:7,628,232...7,674,969
Ensembl chr 9:7,628,232...7,674,980 		JBrowse link
G Noxo1 NADPH oxidase organizer 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr17:24,915,208...24,919,504
Ensembl chr17:24,915,208...24,919,503 		JBrowse link
G Pbxip1 pre B cell leukemia transcription factor interacting protein 1 acts_upstream_of_or_within IMP (PMID:30659184) MGI PMID:30659184 NCBI chr 3:89,343,982...89,358,259
Ensembl chr 3:89,344,013...89,358,259 		JBrowse link
G Plg plasminogen involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:12,597,496...12,638,271
Ensembl chr17:12,597,495...12,638,272 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO GO_Central GO_REF:0000119 NCBI chr11:32,297,777...32,378,189
Ensembl chr11:32,297,820...32,378,173 		JBrowse link
G Tpsab1 tryptase alpha/beta 1 involved_in ISO (PMID:27068509) BHF-UCL PMID:27068509 NCBI chr17:25,562,219...25,564,536
Ensembl chr17:25,562,212...25,564,541 		JBrowse link
G Washc1 WASH complex subunit 1 involved_in ISO (PMID:24344185) UniProt PMID:24344185 NCBI chr17:66,418,524...66,427,498
Ensembl chr17:66,418,540...66,427,498 		JBrowse link
G Wdr72 WD repeat domain 72 acts_upstream_of_or_within IMP (PMID:26247047) MGI PMID:26247047 NCBI chr 9:74,017,608...74,190,485
Ensembl chr 9:74,017,638...74,190,590 		JBrowse link
gene expression involved in extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within IMP (PMID:23900597) MGI PMID:23900597 NCBI chr 5:104,318,569...104,327,993
Ensembl chr 5:104,318,578...104,327,993 		JBrowse link
G Pbxip1 pre B cell leukemia transcription factor interacting protein 1 acts_upstream_of_or_within IMP (PMID:30659184) MGI PMID:30659184 NCBI chr 3:89,343,982...89,358,259
Ensembl chr 3:89,344,013...89,358,259 		JBrowse link
G Zfp469 zinc finger protein 469 acts_upstream_of_or_within IMP (PMID:34368841) MGI PMID:34368841 NCBI chr 8:122,770,009...122,999,389
Ensembl chr 8:122,985,359...122,999,389 		JBrowse link
glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a3 collagen, type IV, alpha 3 involved_in IMP (PMID:12631063) UniProt PMID:12631063 NCBI chr 1:82,564,647...82,699,778
Ensembl chr 1:82,564,642...82,699,780 		JBrowse link
G Col4a4 collagen, type IV, alpha 4 acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA		 (PMID:10534397) MGI
GO_Central		 PMID:10534397 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:82,426,140...82,564,570
Ensembl chr 1:82,426,144...82,564,570 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (PMID:18480751) MGI PMID:18480751 NCBI chr15:52,931,657...53,209,579
Ensembl chr15:52,927,434...53,209,555 		JBrowse link
G Mpv17 MpV17 mitochondrial inner membrane protein involved_in IMP (PMID:16041630) UniProt PMID:16041630 NCBI chr 5:31,298,007...31,311,595
Ensembl chr 5:31,297,998...31,311,595 		JBrowse link
G Myo1e myosin IE involved_in IMP (PMID:19005011) UniProt PMID:19005011 NCBI chr 9:70,114,632...70,307,349
Ensembl chr 9:70,114,632...70,307,048 		JBrowse link
G Nid1 nidogen 1 acts_upstream_of_or_within IMP (PMID:14566019) MGI PMID:14566019 NCBI chr13:13,612,252...13,686,849
Ensembl chr13:13,612,136...13,686,854 		JBrowse link
G Nphs1 nephrosis 1, nephrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:30,157,259...30,188,048
Ensembl chr 7:30,157,740...30,186,648 		JBrowse link
G Sulf1 sulfatase 1 involved_in IGI
IBA		 (PMID:21719793) UniProt
GO_Central		 PMID:21719793 GO_REF:0000033 NCBI chr 1:12,762,421...12,946,090
Ensembl chr 1:12,762,501...12,931,416 		JBrowse link
G Sulf2 sulfatase 2 involved_in IGI
IBA		 (PMID:21719793) UniProt
GO_Central		 PMID:21719793 GO_REF:0000033 NCBI chr 2:165,915,819...165,997,603
Ensembl chr 2:165,915,009...165,997,583 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:104,956,874...105,003,959
Ensembl chr 2:104,956,874...105,003,961 		JBrowse link
metanephric glomerular basement membrane development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb2 laminin, beta 2 acts_upstream_of_or_within IMP (PMID:16886065), (PMID:7670489) MGI PMID:7670489 PMID:16886065 NCBI chr 9:108,357,080...108,367,729
Ensembl chr 9:108,356,935...108,367,729 		JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chadl chondroadherin-like involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr15:81,570,366...81,581,564
Ensembl chr15:81,562,497...81,581,488 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IMP (PMID:25056700) BHF-UCL PMID:25056700 NCBI chr 5:31,070,729...31,078,623
Ensembl chr 5:31,070,746...31,078,621 		JBrowse link
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 anthrax toxin receptor 1 acts_upstream_of_or_within IMP (PMID:25572963) MGI PMID:25572963 NCBI chr 6:87,110,835...87,312,757
Ensembl chr 6:87,110,835...87,312,803 		JBrowse link
G Mir145a microRNA 145a involved_in
acts_upstream_of		 ISO (PMID:25704091)
(PMID:25323858)		 BHF-UCL PMID:25323858 PMID:25704091 NCBI chr18:61,780,896...61,780,965
Ensembl chr18:61,780,896...61,780,965 		JBrowse link
G Mir18 microRNA 18 involved_in ISO (PMID:28131417) BHF-UCL PMID:28131417 NCBI chr14:115,281,283...115,281,378
Ensembl chr14:115,281,283...115,281,378 		JBrowse link
G Mir19a microRNA 19a acts_upstream_of ISO (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr14:115,281,432...115,281,513
Ensembl chr14:115,281,432...115,281,513 		JBrowse link
G Mir19b-1 microRNA 19b-1 acts_upstream_of ISO (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr14:115,281,737...115,281,823
Ensembl chr14:115,281,737...115,281,823 		JBrowse link
G Mir19b-2 microRNA 19b-2 acts_upstream_of ISO (PMID:27098600) BHF-UCL PMID:27098600 NCBI chr  X:51,830,860...51,830,943
Ensembl chr  X:51,830,860...51,830,943 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:28095798) BHF-UCL PMID:28095798 NCBI chr13:63,448,526...63,448,598
Ensembl chr13:63,448,526...63,448,598 		JBrowse link
G Mir483 microRNA 483 acts_upstream_of ISO (PMID:26747772) BHF-UCL PMID:26747772 NCBI chr 7:142,208,661...142,208,733
Ensembl chr 7:142,208,661...142,208,733 		JBrowse link
G Mir9-1 microRNA 9-1 acts_upstream_of ISO (PMID:26315535) BHF-UCL PMID:26315535 NCBI chr 3:88,122,905...88,122,993
Ensembl chr 3:88,122,905...88,122,993 		JBrowse link
G Mir9-2 microRNA 9-2 acts_upstream_of ISO (PMID:26315535) BHF-UCL PMID:26315535 NCBI chr13:83,886,933...83,887,004
Ensembl chr13:83,886,933...83,887,004 		JBrowse link
G Mir9-3 microRNA 9-3 acts_upstream_of ISO (PMID:26315535) BHF-UCL PMID:26315535 NCBI chr 7:79,155,012...79,155,101
Ensembl chr 7:79,155,012...79,155,101 		JBrowse link
G Mir98 microRNA 98 acts_upstream_of ISO (PMID:28251559) BHF-UCL PMID:28251559 NCBI chr  X:150,696,210...150,696,317
Ensembl chr  X:150,696,210...150,696,317 		JBrowse link
G Pparg peroxisome proliferator activated receptor gamma involved_in ISO GO_Central GO_REF:0000119 NCBI chr 6:115,337,828...115,467,365
Ensembl chr 6:115,337,912...115,467,360 		JBrowse link
G Tgfbr3 transforming growth factor, beta receptor III involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:107,254,433...107,437,495
Ensembl chr 5:107,254,436...107,437,495 		JBrowse link
negative regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adtrp androgen dependent TFPI regulating protein involved_in ISO GO_Central GO_REF:0000119 NCBI chr13:41,916,621...42,001,092
Ensembl chr13:41,916,624...42,001,160 		JBrowse link
G Notch1 notch 1 involved_in IMP (PMID:26491108) BHF-UCL PMID:26491108 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a involved_in IGI (PMID:26491108) BHF-UCL PMID:26491108 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447 		JBrowse link
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b involved_in IGI (PMID:26491108) BHF-UCL PMID:26491108 NCBI chr 4:144,938,938...144,973,453
Ensembl chr 4:144,940,033...144,973,440 		JBrowse link
negative regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C involved_in ISO GO_Central GO_REF:0000119 NCBI chr 2:148,713,642...148,717,432
Ensembl chr 2:148,713,642...148,717,612 		JBrowse link
G Dpp4 dipeptidylpeptidase 4 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:62,160,417...62,242,635
Ensembl chr 2:62,160,417...62,242,575 		JBrowse link
G Fap fibroblast activation protein involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:62,331,280...62,404,365
Ensembl chr 2:62,331,287...62,404,419 		JBrowse link
G Mir98 microRNA 98 involved_in ISO (PMID:26587789) ARUK-UCL PMID:26587789 NCBI chr  X:150,696,210...150,696,317
Ensembl chr  X:150,696,210...150,696,317 		JBrowse link
negative regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fap fibroblast activation protein involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:62,331,280...62,404,365
Ensembl chr 2:62,331,287...62,404,419 		JBrowse link
polarized secretion of basement membrane proteins in epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle1 prickle planar cell polarity protein 1 involved_in IMP (PMID:33144400) MGI PMID:33144400 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 CLIP associating protein 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 1:118,314,976...118,537,192
Ensembl chr 1:118,316,788...118,540,408 		JBrowse link
G Clasp2 CLIP associating protein 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:113,567,776...113,748,765
Ensembl chr 9:113,570,541...113,748,750 		JBrowse link
G Dag1 dystroglycan 1 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:108,082,060...108,141,176
Ensembl chr 9:108,081,833...108,141,157 		JBrowse link
G Phldb1 pleckstrin homology like domain, family B, member 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:44,597,605...44,649,800
Ensembl chr 9:44,597,601...44,646,495 		JBrowse link
G Phldb2 pleckstrin homology like domain, family B, member 2 involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr16:45,566,593...45,773,961
Ensembl chr16:45,566,606...45,773,961 		JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:72,063,631...72,077,555
Ensembl chr 8:72,063,642...72,077,555 		JBrowse link
G Efemp2 epidermal growth factor-containing fibulin-like extracellular matrix protein 2 involved_in IMP (PMID:26178373), (PMID:26220971), (PMID:26711913) UniProt PMID:26178373 PMID:26220971 PMID:26711913 NCBI chr19:5,523,974...5,532,548
Ensembl chr19:5,523,982...5,532,545 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IMP (PMID:29304157) BHF-UCL PMID:29304157 NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262 		JBrowse link
G Tnxb tenascin XB involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:34,879,427...34,938,789
Ensembl chr17:34,879,431...34,938,789 		JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen acts_upstream_of ISO GO_Central GO_REF:0000119 NCBI chr 8:125,283,326...125,296,445
Ensembl chr 8:125,283,273...125,296,445 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in IMP (PMID:25056700) BHF-UCL PMID:25056700 NCBI chr 5:31,070,729...31,078,623
Ensembl chr 5:31,070,746...31,078,621 		JBrowse link
G Mad2l2 MAD2 mitotic arrest deficient-like 2 involved_in ISO RGD
GO_Central		 PMID:27488450 GO_REF:0000096 RGD:152995505 NCBI chr 4:148,214,615...148,230,161
Ensembl chr 4:148,214,841...148,230,156 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:30729664) BHF-UCL PMID:30729664 NCBI chr13:63,448,526...63,448,598
Ensembl chr13:63,448,526...63,448,598 		JBrowse link
G Rgcc regulator of cell cycle involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr14:79,526,190...79,539,075
Ensembl chr14:79,526,196...79,539,085 		JBrowse link
G Smad3 SMAD family member 3 involved_in
acts_upstream_of		 IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr18:73,767,861...73,836,862
Ensembl chr18:73,772,080...73,836,851 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (PMID:20881014) MGI PMID:20881014 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of IDA (PMID:24279830) BHF-UCL PMID:24279830 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I involved_in
acts_upstream_of		 IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931 		JBrowse link
positive regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO RGD
GO_Central		 PMID:21419085 GO_REF:0000096 RGD:5129171 NCBI chr 8:125,283,326...125,296,445
Ensembl chr 8:125,283,273...125,296,445 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IMP (PMID:16730346) BHF-UCL PMID:16730346 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805 		JBrowse link
G Cpb2 carboxypeptidase B2 involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:23369837 GO_REF:0000096 GO_REF:0000107 RGD:7243115 NCBI chr14:75,479,727...75,520,995
Ensembl chr14:75,479,727...75,520,995 		JBrowse link
G Ier3ip1 immediate early response 3 interacting protein 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr18:77,017,723...77,029,310
Ensembl chr18:77,017,713...77,029,308 		JBrowse link
G Rgcc regulator of cell cycle involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr14:79,526,190...79,539,075
Ensembl chr14:79,526,196...79,539,085 		JBrowse link
positive regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carmil2 capping protein regulator and myosin 1 linker 2 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:106,412,642...106,424,827
Ensembl chr 8:106,412,906...106,424,819 		JBrowse link
G Clasp1 CLIP associating protein 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 1:118,314,976...118,537,192
Ensembl chr 1:118,316,788...118,540,408 		JBrowse link
G Clasp2 CLIP associating protein 2 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 9:113,567,776...113,748,765
Ensembl chr 9:113,570,541...113,748,750 		JBrowse link
G Ddr2 discoidin domain receptor family, member 2 involved_in IMP (PMID:11723120) UniProt PMID:11723120 NCBI chr 1:169,799,874...169,938,525
Ensembl chr 1:169,799,876...169,938,331 		JBrowse link
G Fscn1 fascin actin-bundling protein 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 5:142,946,110...142,958,944
Ensembl chr 5:142,946,098...142,958,940 		JBrowse link
G Il6 interleukin 6 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Meltf melanotransferrin involved_in ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr16:31,697,449...31,717,838
Ensembl chr16:31,697,628...31,717,838 		JBrowse link
G Pdpn podoplanin involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:142,993,979...143,026,134
Ensembl chr 4:142,994,001...143,026,134 		JBrowse link
G Sema5a sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A involved_in NAS (PMID:19850054) UniProt PMID:19850054 NCBI chr15:32,244,959...32,696,487
Ensembl chr15:32,244,956...32,696,487 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IDA (PMID:21984612) UniProt PMID:21984612 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
positive regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:19846571 GO_REF:0000096 GO_REF:0000107 RGD:8693597 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Cflar CASP8 and FADD-like apoptosis regulator involved_in ISO RGD
GO_Central		 PMID:24691542 GO_REF:0000096 RGD:11341715 NCBI chr 1:58,750,353...58,798,043
Ensembl chr 1:58,750,667...58,798,043 		JBrowse link
G Cyp2j6 cytochrome P450, family 2, subfamily j, polypeptide 6 involved_in ISO GO_Central GO_REF:0000096 NCBI chr 4:96,404,375...96,449,835
Ensembl chr 4:96,404,375...96,441,898 		JBrowse link
G Cyp2j9 cytochrome P450, family 2, subfamily j, polypeptide 9 ISO RGD PMID:29656108 RGD:150520032 NCBI chr 4:96,456,661...96,480,748
Ensembl chr 4:96,456,666...96,479,815 		JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IMP (PMID:29304157) BHF-UCL PMID:29304157 NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262 		JBrowse link
regulation of basement membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama1 laminin, alpha 1 involved_in NAS (PMID:2119632) ComplexPortal PMID:2119632 NCBI chr17:68,004,129...68,129,640
Ensembl chr17:68,004,254...68,129,642 		JBrowse link
G Lama2 laminin, alpha 2 involved_in NAS (PMID:2119632) ComplexPortal PMID:2119632 NCBI chr10:26,857,281...27,493,021
Ensembl chr10:26,856,032...27,495,754 		JBrowse link
G Lamb1 laminin B1 involved_in NAS (PMID:2119632) ComplexPortal PMID:2119632 NCBI chr12:31,315,230...31,379,643
Ensembl chr12:31,315,233...31,379,643 		JBrowse link
G Lamb2 laminin, beta 2 involved_in NAS (PMID:2119632) ComplexPortal PMID:2119632 NCBI chr 9:108,357,080...108,367,729
Ensembl chr 9:108,356,935...108,367,729 		JBrowse link
G Lamc1 laminin, gamma 1 involved_in NAS (PMID:2119632) ComplexPortal PMID:2119632 NCBI chr 1:153,094,668...153,208,532
Ensembl chr 1:153,094,668...153,208,532 		JBrowse link
G Nid1 nidogen 1 involved_in NAS (PMID:2119632) ComplexPortal PMID:2119632 NCBI chr13:13,612,252...13,686,849
Ensembl chr13:13,612,136...13,686,854 		JBrowse link
regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp1 AE binding protein 1 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:5,806,085...5,822,248
Ensembl chr11:5,811,947...5,822,088 		JBrowse link
G Col6a1 collagen, type VI, alpha 1 acts_upstream_of_or_within IMP (PMID:20951202) MGI PMID:20951202 NCBI chr10:76,544,626...76,561,869
Ensembl chr10:76,544,626...76,562,002 		JBrowse link
G Efemp2 epidermal growth factor-containing fibulin-like extracellular matrix protein 2 involved_in IMP (PMID:26690653) UniProt PMID:26690653 NCBI chr19:5,523,974...5,532,548
Ensembl chr19:5,523,982...5,532,545 		JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO GO_Central GO_REF:0000119 NCBI chr 8:125,283,326...125,296,445
Ensembl chr 8:125,283,273...125,296,445 		JBrowse link
G Has2 hyaluronan synthase 2 involved_in ISO
IEA		 RGD
GO_Central
Ensembl		 PMID:27094859 GO_REF:0000096 GO_REF:0000107 RGD:12910548 NCBI chr15:56,529,023...56,557,942
Ensembl chr15:56,529,023...56,557,935 		JBrowse link
G Notch1 notch 1 involved_in IMP (PMID:21311046) BHF-UCL PMID:21311046 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 acts_upstream_of IMP (PMID:31319059) BHF-UCL PMID:31319059 NCBI chr 4:118,328,388...118,347,046
Ensembl chr 4:118,328,388...118,347,258 		JBrowse link
regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric1 RAB6A GEF complex partner 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr19:29,499,637...29,583,909
Ensembl chr19:29,499,682...29,584,229 		JBrowse link
regulation of extracellular matrix disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddr1 discoidin domain receptor family, member 1 involved_in IMP
ISO		 (PMID:12065315) UniProt
GO_Central		 PMID:12065315 GO_REF:0000119 NCBI chr17:35,992,459...36,015,633
Ensembl chr17:35,992,459...36,015,513 		JBrowse link
G Ets1 E26 avian leukemia oncogene 1, 5' domain involved_in ISO RGD
GO_Central		 PMID:16738537 GO_REF:0000096 RGD:2313717 NCBI chr 9:32,547,501...32,669,116
Ensembl chr 9:32,547,517...32,669,116 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr13:55,300,631...55,316,572
Ensembl chr13:55,300,453...55,316,572 		JBrowse link
regulation of extracellular matrix organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (PMID:20980600) MGI PMID:20980600 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (PMID:20980600) MGI PMID:20980600 NCBI chr 1:156,386,160...156,477,189
Ensembl chr 1:156,386,356...156,477,138 		JBrowse link
G Angptl7 angiopoietin-like 7 involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:148,579,737...148,584,919
Ensembl chr 4:148,579,640...148,584,917 		JBrowse link
G Axin2 axin 2 involved_in IMP (PMID:28069701) BHF-UCL PMID:28069701 NCBI chr11:108,808,687...108,841,609
Ensembl chr11:108,811,175...108,841,609 		JBrowse link
G Itgb3 integrin beta 3 acts_upstream_of_or_within IMP (PMID:22984613) MGI PMID:22984613 NCBI chr11:104,498,826...104,561,302
Ensembl chr11:104,498,826...104,561,302 		JBrowse link
G Lemd3 LEM domain containing 3 acts_upstream_of_or_within IMP (PMID:16943282) MGI PMID:16943282 NCBI chr10:120,759,316...120,815,491
Ensembl chr10:120,759,318...120,815,237 		JBrowse link
G Mir21a microRNA 21a acts_upstream_of ISO (PMID:18591254) BHF-UCL PMID:18591254 NCBI chr11:86,474,893...86,474,984
Ensembl chr11:86,474,893...86,474,984 		JBrowse link
G Prdm5 PR domain containing 5 involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:65,754,640...65,914,606
Ensembl chr 6:65,755,972...65,913,994 		JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs involved_in IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:43,875,521...43,944,806
Ensembl chr 4:43,875,530...43,944,806 		JBrowse link
G Slc2a10 solute carrier family 2 (facilitated glucose transporter), member 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:165,345,817...165,361,837
Ensembl chr 2:165,345,707...165,361,837 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within IMP (PMID:24038871) MGI PMID:24038871 NCBI chr 2:151,984,973...151,991,017
Ensembl chr 2:151,985,481...151,991,017 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within IMP (PMID:21780244) MGI PMID:21780244 NCBI chr 1:186,354,984...186,441,504
Ensembl chr 1:186,354,989...186,438,186 		JBrowse link
G Zfp469 zinc finger protein 469 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 8:122,770,009...122,999,389
Ensembl chr 8:122,985,359...122,999,389 		JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (PMID:17881493) MGI PMID:17881493 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
Term paths to the root