Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Col13a1 (collagen, type XIII, alpha 1) Mus musculus
Analyze
Symbol: Col13a1
Name: collagen, type XIII, alpha 1
Description: ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN endochondral ossification; morphogenesis of a branching structure; cell-matrix adhesion (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH abnormal basement membrane morphology; abnormal cell adhesion; abnormal diaphragm morphology; ASSOCIATED WITH congenital myasthenic syndrome (ortholog); congenital myasthenic syndrome 19 (ortholog); Spontaneous Abortions (ortholog); FOUND IN cell-cell junction; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: collagen alpha-1(XIII) chain; procollagen, type XIII, alpha 1; type XIII collagen
Orthologs:
Homo sapiens (human) : COL13A1 (collagen type XIII alpha 1 chain)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Col13a1 (collagen type XIII alpha 1 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col13a1 (collagen type XIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL13A1 (collagen type XIII alpha 1 chain)
Canis lupus familiaris (dog) : COL13A1 (collagen type XIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col13a1 (collagen type XIII alpha 1 chain)
Sus scrofa (pig) : COL13A1 (collagen type XIII alpha 1 chain)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm381061,838,234 - 61,979,206 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371061,301,246 - 61,441,856 (-)NCBIGRCm37mm9NCBIm37
MGSCv361061,233,855 - 61,374,465 (-)NCBImm8
Celera1062,940,611 - 63,081,159 (-)NCBICelera
Cytogenetic Map10 B4NCBI
cM Map1032.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (GRCm38)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Additional Information

External Database Links
 
More on Col13a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: mm9 mm10
MGI Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1312682
Created: 2005-01-12
Species: Mus musculus
Last Modified: 2019-10-08
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.