Lcp1 (lymphocyte cytosolic protein 1) - Rat Genome Database

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Gene: Lcp1 (lymphocyte cytosolic protein 1) Mus musculus
Analyze
Symbol: Lcp1
Name: lymphocyte cytosolic protein 1
RGD ID: 1317978
MGI Page MGI
Description: Enables actin filament binding activity. Acts upstream of or within actin filament bundle assembly. Located in several cellular components, including actin filament; phagocytic cup; and ruffle. Is expressed in several structures, including brain; cardiovascular system; female reproductive system; gut; and yolk sac. Human ortholog(s) of this gene implicated in nicotine dependence. Orthologous to human LCP1 (lymphocyte cytosolic protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 65 kDa macrophage protein; AW536232; D14Ertd310; D14Ertd310e; L-; L-fi; L-fimbrin; L-plastin (Lymphocyte cytosolic protein 1) (LCP-1) (65 kDa macrophage protein) (PP65); LCP-1; P; plastin 2, L; plastin-2; Pls2; pp65
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7823  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391475,368,570 - 75,468,282 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1475,368,541 - 75,468,282 (+)EnsemblGRCm39 Ensembl
GRCm381475,131,105 - 75,230,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1475,131,101 - 75,230,842 (+)EnsemblGRCm38mm10GRCm38
MGSCv371475,536,232 - 75,630,615 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361473,870,580 - 73,964,963 (+)NCBIMGSCv36mm8
Celera1472,636,371 - 72,732,832 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1439.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2-palmitoylglycerol  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
acetamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
aniline  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
bathocuproine disulfonic acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP)
buspirone  (ISO)
cadmium dichloride  (ISO)
calyculin a  (ISO)
cannabidiol  (EXP)
cantharidin  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
Cuprizon  (ISO)
curcumin  (EXP)
cyclosporin A  (EXP,ISO)
deoxynivalenol  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dimethylarsinic acid  (EXP)
dimethylarsinous acid  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
enzalutamide  (ISO)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
gentamycin  (ISO)
hydroxyflutamide  (ISO)
indoles  (ISO)
ionomycin  (ISO)
KT 5926  (ISO)
lead diacetate  (EXP)
lidocaine  (ISO)
lithium chloride  (ISO)
methylarsonic acid  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
nimesulide  (ISO)
oxycodone  (ISO)
paracetamol  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
pyrrolidine dithiocarbamate  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sotorasib  (ISO)
tanespimycin  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trametinib  (ISO)
trichloroethene  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Substance dependence low-density whole genome association study in two distinct American populations. Yu Y, etal., Hum Genet. 2008 Jun;123(5):495-506. doi: 10.1007/s00439-008-0501-0. Epub 2008 Apr 26.
Additional References at PubMed
PMID:2686960   PMID:7655078   PMID:7897227   PMID:8060349   PMID:9022040   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11591653   PMID:12477932   PMID:12871642  
PMID:14729942   PMID:14756805   PMID:15102471   PMID:15489334   PMID:16115810   PMID:16141072   PMID:16141073   PMID:17198697   PMID:17296600   PMID:19423573   PMID:20194718   PMID:20551175  
PMID:20650888   PMID:21076065   PMID:21267068   PMID:21308776   PMID:21677750   PMID:21832164   PMID:21832165   PMID:21862448   PMID:21873635   PMID:22922362   PMID:23589339   PMID:24194600  
PMID:24595139   PMID:27465533   PMID:27758872   PMID:28378742   PMID:28637896   PMID:30136304   PMID:30196744   PMID:30244178   PMID:30333137   PMID:31453341   PMID:31453638   PMID:32318063  
PMID:32325033   PMID:32554809   PMID:33082323   PMID:33858961   PMID:35294888   PMID:37138794  


Genomics

Comparative Map Data
Lcp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391475,368,570 - 75,468,282 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1475,368,541 - 75,468,282 (+)EnsemblGRCm39 Ensembl
GRCm381475,131,105 - 75,230,842 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1475,131,101 - 75,230,842 (+)EnsemblGRCm38mm10GRCm38
MGSCv371475,536,232 - 75,630,615 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361473,870,580 - 73,964,963 (+)NCBIMGSCv36mm8
Celera1472,636,371 - 72,732,832 (+)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1439.63NCBI
LCP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381346,125,923 - 46,182,177 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1346,125,920 - 46,211,871 (-)EnsemblGRCh38hg38GRCh38
GRCh371346,700,058 - 46,756,312 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361345,598,060 - 45,654,395 (-)NCBINCBI36Build 36hg18NCBI36
Build 341345,598,059 - 45,654,395NCBI
Celera1327,755,067 - 27,811,461 (-)NCBICelera
Cytogenetic Map13q14.13NCBI
HuRef1327,497,877 - 27,554,218 (-)NCBIHuRef
CHM1_11346,669,191 - 46,725,269 (-)NCBICHM1_1
T2T-CHM13v2.01345,347,305 - 45,403,192 (-)NCBIT2T-CHM13v2.0
Lcp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81556,846,375 - 56,954,090 (+)NCBIGRCr8
mRatBN7.21550,443,300 - 50,544,682 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1550,488,149 - 50,544,680 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1554,630,232 - 54,686,870 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01555,748,540 - 55,805,188 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01552,580,535 - 52,637,056 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01557,170,566 - 57,277,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1557,221,292 - 57,277,811 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01560,888,052 - 60,988,851 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41556,034,457 - 56,091,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11556,050,236 - 56,107,660 (+)NCBI
Celera1550,120,119 - 50,176,635 (+)NCBICelera
Cytogenetic Map15q11NCBI
Lcp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555183,814,840 - 3,891,299 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555183,815,181 - 3,863,440 (-)NCBIChiLan1.0ChiLan1.0
LCP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21445,180,206 - 45,266,387 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11336,234,410 - 36,320,594 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01326,820,846 - 26,906,916 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LCP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1224,955,453 - 5,059,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl224,992,347 - 5,059,636 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha224,965,424 - 5,047,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0225,070,372 - 5,176,432 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl225,123,064 - 5,175,065 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1224,852,728 - 4,958,773 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0224,916,029 - 5,022,003 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0224,921,102 - 5,027,186 (+)NCBIUU_Cfam_GSD_1.0
Lcp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945156,224,062 - 156,314,492 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936857646,118 - 698,035 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936857646,363 - 726,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LCP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1121,126,539 - 21,223,550 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11121,126,504 - 21,223,543 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21121,535,029 - 21,685,279 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LCP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1324,182,086 - 24,238,746 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl324,182,076 - 24,238,651 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605719,776,506 - 19,834,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lcp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247488,779,395 - 8,835,500 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247488,740,563 - 8,833,091 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lcp1
3177 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2118
Count of miRNA genes:641
Interacting mature miRNAs:807
Transcripts:ENSMUST00000122840, ENSMUST00000124499, ENSMUST00000124608, ENSMUST00000125833, ENSMUST00000130510, ENSMUST00000131802, ENSMUST00000134114, ENSMUST00000143539, ENSMUST00000145303, ENSMUST00000148609, ENSMUST00000149883
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse

Markers in Region
AW536232  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371475,630,289 - 75,630,392UniSTSGRCm37
MGSCv37X129,627,152 - 129,627,263UniSTSGRCm37
Celera1492,092,528 - 92,092,631UniSTS
Celera1472,732,506 - 72,732,609UniSTS
CeleraX115,978,232 - 115,978,343UniSTS
Cytogenetic Map14D3UniSTS
cM Map1442.0UniSTS
Whitehead/MRC_RH14846.53UniSTS
16.MMHAP57FLF1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381475,186,166 - 75,186,365UniSTSGRCm38
MGSCv371475,585,973 - 75,586,172UniSTSGRCm37
Celera1472,685,861 - 72,686,060UniSTS
Cytogenetic Map14D3UniSTS
cM Map1442.0UniSTS
Whitehead_YAC14 UniSTS
Lcp1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14D3UniSTS
cM Map1442.0UniSTS
RH126802  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371475,630,353 - 75,630,591UniSTSGRCm37
MGSCv37X129,626,953 - 129,627,191UniSTSGRCm37
Celera1472,732,570 - 72,732,808UniSTS
Celera1492,092,592 - 92,092,830UniSTS
CeleraX115,978,033 - 115,978,271UniSTS
Cytogenetic Map14D3UniSTS
cM Map1442.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001247984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF149038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF728368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U82610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U82611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000122840   ⟹   ENSMUSP00000117984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,373,915 - 75,437,894 (+)Ensembl
GRCm38.p6 Ensembl1475,136,475 - 75,200,454 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124499   ⟹   ENSMUSP00000121201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,368,994 - 75,467,236 (+)Ensembl
GRCm38.p6 Ensembl1475,131,554 - 75,229,796 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,368,599 - 75,385,520 (+)Ensembl
GRCm38.p6 Ensembl1475,131,159 - 75,148,080 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125833   ⟹   ENSMUSP00000116033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,368,939 - 75,437,903 (+)Ensembl
GRCm38.p6 Ensembl1475,131,499 - 75,200,463 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130510
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,435,340 - 75,436,806 (+)Ensembl
GRCm38.p6 Ensembl1475,197,900 - 75,199,366 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131802   ⟹   ENSMUSP00000117137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,427,769 - 75,468,256 (+)Ensembl
GRCm38.p6 Ensembl1475,190,329 - 75,230,816 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134114   ⟹   ENSMUSP00000121376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,368,599 - 75,437,954 (+)Ensembl
GRCm38.p6 Ensembl1475,131,159 - 75,200,514 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143539   ⟹   ENSMUSP00000118721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,368,541 - 75,436,884 (+)Ensembl
GRCm38.p6 Ensembl1475,131,101 - 75,199,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145303   ⟹   ENSMUSP00000116271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,373,772 - 75,468,282 (+)Ensembl
GRCm38.p6 Ensembl1475,136,332 - 75,230,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,412,387 - 75,415,463 (+)Ensembl
GRCm38.p6 Ensembl1475,174,947 - 75,178,023 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1475,413,648 - 75,435,582 (+)Ensembl
GRCm38.p6 Ensembl1475,176,208 - 75,198,142 (+)Ensembl
RefSeq Acc Id: NM_001247984   ⟹   NP_001234913
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391475,368,570 - 75,468,282 (+)NCBI
GRCm381475,131,123 - 75,230,842 (+)NCBI
Celera1472,631,072 - 72,732,866 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001424512   ⟹   NP_001411441
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391475,368,570 - 75,468,282 (+)NCBI
RefSeq Acc Id: NM_001424513   ⟹   NP_001411442
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391475,368,570 - 75,468,282 (+)NCBI
RefSeq Acc Id: NM_001424514   ⟹   NP_001411443
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391475,373,984 - 75,468,282 (+)NCBI
RefSeq Acc Id: NM_001424515   ⟹   NP_001411444
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391475,414,039 - 75,468,282 (+)NCBI
RefSeq Acc Id: NM_008879   ⟹   NP_032905
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391475,373,984 - 75,468,282 (+)NCBI
GRCm381475,136,425 - 75,230,842 (+)NCBI
MGSCv371475,536,232 - 75,630,615 (+)RGD
Celera1472,631,072 - 72,732,866 (+)ENTREZGENE
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036158507   ⟹   XP_036014400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391475,373,920 - 75,468,282 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001234913 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411441 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411442 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411443 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411444 (Get FASTA)   NCBI Sequence Viewer  
  NP_032905 (Get FASTA)   NCBI Sequence Viewer  
  XP_036014400 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC53012 (Get FASTA)   NCBI Sequence Viewer  
  AAH22943 (Get FASTA)   NCBI Sequence Viewer  
  BAA07085 (Get FASTA)   NCBI Sequence Viewer  
  BAB26141 (Get FASTA)   NCBI Sequence Viewer  
  BAC27205 (Get FASTA)   NCBI Sequence Viewer  
  BAC27208 (Get FASTA)   NCBI Sequence Viewer  
  BAC40207 (Get FASTA)   NCBI Sequence Viewer  
  BAE20456 (Get FASTA)   NCBI Sequence Viewer  
  BAE29087 (Get FASTA)   NCBI Sequence Viewer  
  BAE30161 (Get FASTA)   NCBI Sequence Viewer  
  BAE30488 (Get FASTA)   NCBI Sequence Viewer  
  BAE30639 (Get FASTA)   NCBI Sequence Viewer  
  BAE31403 (Get FASTA)   NCBI Sequence Viewer  
  BAE31574 (Get FASTA)   NCBI Sequence Viewer  
  BAE31583 (Get FASTA)   NCBI Sequence Viewer  
  BAE31687 (Get FASTA)   NCBI Sequence Viewer  
  BAE31707 (Get FASTA)   NCBI Sequence Viewer  
  BAE31806 (Get FASTA)   NCBI Sequence Viewer  
  BAE39375 (Get FASTA)   NCBI Sequence Viewer  
  BAE41332 (Get FASTA)   NCBI Sequence Viewer  
  BAE41398 (Get FASTA)   NCBI Sequence Viewer  
  BAE42649 (Get FASTA)   NCBI Sequence Viewer  
  EDL35834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000116033.2
  ENSMUSP00000116271
  ENSMUSP00000116271.2
  ENSMUSP00000117137.2
  ENSMUSP00000117984.2
  ENSMUSP00000118721.2
  ENSMUSP00000121201
  ENSMUSP00000121201.2
  ENSMUSP00000121376.2
GenBank Protein Q61233 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032905   ⟸   NM_008879
- UniProtKB: Q8R1X3 (UniProtKB/Swiss-Prot),   Q3UE24 (UniProtKB/Swiss-Prot),   Q9CV77 (UniProtKB/Swiss-Prot),   Q61233 (UniProtKB/Swiss-Prot),   Q3TJX0 (UniProtKB/TrEMBL),   Q3U6Z1 (UniProtKB/TrEMBL),   Q3U9M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001234913   ⟸   NM_001247984
- UniProtKB: Q8R1X3 (UniProtKB/Swiss-Prot),   Q3UE24 (UniProtKB/Swiss-Prot),   Q9CV77 (UniProtKB/Swiss-Prot),   Q61233 (UniProtKB/Swiss-Prot),   Q3TJX0 (UniProtKB/TrEMBL),   Q3U6Z1 (UniProtKB/TrEMBL),   Q3U9M7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000116033   ⟸   ENSMUST00000125833
RefSeq Acc Id: ENSMUSP00000116271   ⟸   ENSMUST00000145303
RefSeq Acc Id: ENSMUSP00000121201   ⟸   ENSMUST00000124499
RefSeq Acc Id: ENSMUSP00000118721   ⟸   ENSMUST00000143539
RefSeq Acc Id: ENSMUSP00000117137   ⟸   ENSMUST00000131802
RefSeq Acc Id: ENSMUSP00000121376   ⟸   ENSMUST00000134114
RefSeq Acc Id: ENSMUSP00000117984   ⟸   ENSMUST00000122840
RefSeq Acc Id: XP_036014400   ⟸   XM_036158507
- Peptide Label: isoform X1
- UniProtKB: Q8R1X3 (UniProtKB/Swiss-Prot),   Q61233 (UniProtKB/Swiss-Prot),   Q3UE24 (UniProtKB/Swiss-Prot),   Q9CV77 (UniProtKB/Swiss-Prot),   Q3TJX0 (UniProtKB/TrEMBL),   Q3U6Z1 (UniProtKB/TrEMBL),   Q3U9M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001411442   ⟸   NM_001424513
- UniProtKB: Q9CV77 (UniProtKB/Swiss-Prot),   Q8R1X3 (UniProtKB/Swiss-Prot),   Q61233 (UniProtKB/Swiss-Prot),   Q3UE24 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411441   ⟸   NM_001424512
- UniProtKB: Q9CV77 (UniProtKB/Swiss-Prot),   Q8R1X3 (UniProtKB/Swiss-Prot),   Q61233 (UniProtKB/Swiss-Prot),   Q3UE24 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411443   ⟸   NM_001424514
- UniProtKB: Q9CV77 (UniProtKB/Swiss-Prot),   Q8R1X3 (UniProtKB/Swiss-Prot),   Q61233 (UniProtKB/Swiss-Prot),   Q3UE24 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411444   ⟸   NM_001424515
- UniProtKB: Q9CV77 (UniProtKB/Swiss-Prot),   Q8R1X3 (UniProtKB/Swiss-Prot),   Q61233 (UniProtKB/Swiss-Prot),   Q3UE24 (UniProtKB/Swiss-Prot)
Protein Domains
Calponin-homology (CH)   EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61233-F1-model_v2 AlphaFold Q61233 1-627 view protein structure

Promoters
RGD ID:8682988
Promoter ID:EPDNEW_M19525
Type:initiation region
Name:Lcp1_2
Description:Mus musculus lymphocyte cytosolic protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19526  EPDNEW_M19527  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381475,131,130 - 75,131,190EPDNEW
RGD ID:8682990
Promoter ID:EPDNEW_M19526
Type:initiation region
Name:Lcp1_1
Description:Mus musculus lymphocyte cytosolic protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19525  EPDNEW_M19527  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381475,176,892 - 75,176,952EPDNEW
RGD ID:8683042
Promoter ID:EPDNEW_M19527
Type:initiation region
Name:Lcp1_3
Description:Mus musculus lymphocyte cytosolic protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19525  EPDNEW_M19526  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381475,197,968 - 75,198,028EPDNEW
RGD ID:6825152
Promoter ID:MM_KWN:17468
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   Lung
Transcripts:BC145796_LRRC63,   NM_027581,   OTTMUST00000060384,   OTTMUST00000060385,   OTTMUST00000060929,   OTTMUST00000060930,   UC007UQM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361475,530,806 - 75,531,306 (-)MPROMDB
RGD ID:6825111
Promoter ID:MM_KWN:17469
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour
Transcripts:OTTMUST00000060380,   OTTMUST00000060928
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361475,535,176 - 75,535,677 (+)MPROMDB
RGD ID:6825112
Promoter ID:MM_KWN:17471
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000060381
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361475,573,856 - 75,574,937 (+)MPROMDB
RGD ID:6825113
Promoter ID:MM_KWN:17472
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver,   Spleen
Transcripts:ENSMUST00000110916,   OTTMUST00000060383
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361475,575,361 - 75,576,737 (+)MPROMDB
RGD ID:6825114
Promoter ID:MM_KWN:17473
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000060382
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361475,589,586 - 75,590,562 (+)MPROMDB
RGD ID:6825116
Promoter ID:MM_KWN:17474
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000060386,   UC007UQP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361475,596,911 - 75,597,812 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104808 AgrOrtholog
Ensembl Genes ENSMUSG00000021998 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000122840.8 UniProtKB/TrEMBL
  ENSMUST00000124499 ENTREZGENE
  ENSMUST00000124499.8 UniProtKB/Swiss-Prot
  ENSMUST00000125833.8 UniProtKB/TrEMBL
  ENSMUST00000131802.2 UniProtKB/Swiss-Prot
  ENSMUST00000134114.8 UniProtKB/TrEMBL
  ENSMUST00000143539.8 UniProtKB/TrEMBL
  ENSMUST00000145303 ENTREZGENE
  ENSMUST00000145303.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CaBP1/2/4/5 UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fimbrin/Plastin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18826 UniProtKB/Swiss-Prot
MGD MGI:104808 ENTREZGENE
NCBI Gene 18826 ENTREZGENE
PANTHER CALCIUM-BINDING PROTEIN 1-RELATED UniProtKB/TrEMBL
  CALCIUM-BINDING PROTEIN 2 UniProtKB/TrEMBL
  EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  PLASTIN-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19961 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lcp1 PhenoGen
PROSITE ACTININ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YVW8_MOUSE UniProtKB/TrEMBL
  D3YZ25_MOUSE UniProtKB/TrEMBL
  D3Z311_MOUSE UniProtKB/TrEMBL
  D3Z7D9_MOUSE UniProtKB/TrEMBL
  PLSL_MOUSE UniProtKB/Swiss-Prot
  Q3TAL9_MOUSE UniProtKB/TrEMBL
  Q3TJX0 ENTREZGENE, UniProtKB/TrEMBL
  Q3U6N7_MOUSE UniProtKB/TrEMBL
  Q3U6Z1 ENTREZGENE, UniProtKB/TrEMBL
  Q3U9M7 ENTREZGENE, UniProtKB/TrEMBL
  Q3UE24 ENTREZGENE
  Q61233 ENTREZGENE
  Q8R1X3 ENTREZGENE
  Q9CV77 ENTREZGENE
UniProt Secondary Q3UE24 UniProtKB/Swiss-Prot
  Q8R1X3 UniProtKB/Swiss-Prot
  Q9CV77 UniProtKB/Swiss-Prot