Col5a2 (collagen, type V, alpha 2) - Rat Genome Database

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Gene: Col5a2 (collagen, type V, alpha 2) Mus musculus
Analyze
Symbol: Col5a2
Name: collagen, type V, alpha 2
RGD ID: 736789
MGI Page MGI
Description: Exhibits SMAD binding activity. Involved in several processes, including cellular response to amino acid stimulus; collagen fibril organization; and skin development. Localizes to collagen trimer. Is expressed in several structures, including atrioventricular valve; embryo mesenchyme; genitourinary system; intraembryonic coelom; and musculoskeletal system. Used to study Ehlers-Danlos syndrome classic type 1. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome classic type 2. Orthologous to human COL5A2 (collagen type V alpha 2 chain).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 1110014L14Rik; collagen alpha-2(V) chain; D230017N05; procollagen, type V, alpha 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39145,413,491 - 45,542,442 (-)NCBIGRCm39mm39
GRCm39 Ensembl145,413,481 - 45,542,442 (-)Ensembl
GRCm38145,374,331 - 45,503,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,374,321 - 45,503,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv37145,431,176 - 45,560,127 (-)NCBIGRCm37mm9NCBIm37
MGSCv36145,318,877 - 45,447,828 (-)NCBImm8
Celera145,675,438 - 45,811,971 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4-diaminotoluene  (EXP)
2-butoxyethanol  (EXP)
3-methylcholanthrene  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aconitine  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
alachlor  (ISO)
alendronic acid  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chloroprene  (EXP)
choline  (EXP)
chromium atom  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (EXP)
CU-O LINKAGE  (ISO)
curcumin  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
flavonoids  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (ISO)
hydroquinone  (ISO)
isoprenaline  (EXP)
isotretinoin  (ISO)
L-methionine  (EXP)
Lasiocarpine  (ISO)
lead diacetate  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (EXP)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
pentane-2,3-dione  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
sulindac  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1297453   PMID:7704020   PMID:7813775   PMID:8563024   PMID:8702182   PMID:9582436   PMID:9642685   PMID:10349636   PMID:10722718   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:12477932   PMID:14559231   PMID:15136578   PMID:15199158   PMID:15345741   PMID:15489334   PMID:15872058   PMID:16141072   PMID:16141073   PMID:16424879   PMID:16459152   PMID:16537572  
PMID:16602821   PMID:17881772   PMID:18287559   PMID:18554416   PMID:18816857   PMID:19334288   PMID:20059976   PMID:20548288   PMID:20696843   PMID:21267068   PMID:21467034   PMID:21873635  
PMID:21888903   PMID:22159717   PMID:22437311   PMID:23322734   PMID:23658023   PMID:24006456   PMID:24952961   PMID:25987251   PMID:27770432   PMID:28071719   PMID:28734943   PMID:29061975  
PMID:30566624   PMID:30840660   PMID:32325033  


Genomics

Comparative Map Data
Col5a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39145,413,491 - 45,542,442 (-)NCBIGRCm39mm39
GRCm39 Ensembl145,413,481 - 45,542,442 (-)Ensembl
GRCm38145,374,331 - 45,503,282 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,374,321 - 45,503,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv37145,431,176 - 45,560,127 (-)NCBIGRCm37mm9NCBIm37
MGSCv36145,318,877 - 45,447,828 (-)NCBImm8
Celera145,675,438 - 45,811,971 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
COL5A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2189,031,898 - 189,225,312 (-)EnsemblGRCh38hg38GRCh38
GRCh382189,031,898 - 189,225,301 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372189,896,624 - 190,044,487 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362189,604,886 - 189,752,850 (-)NCBINCBI36hg18NCBI36
Build 342189,722,746 - 189,869,994NCBI
Celera2183,491,426 - 183,639,662 (-)NCBI
Cytogenetic Map2q32.2NCBI
HuRef2181,756,174 - 181,904,275 (-)NCBIHuRef
CHM1_12189,902,544 - 190,050,507 (-)NCBICHM1_1
Col5a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2947,448,736 - 47,598,396 (-)NCBI
Rnor_6.0 Ensembl952,092,511 - 52,238,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0952,091,088 - 52,238,735 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0951,757,496 - 51,906,270 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4944,374,113 - 44,525,086 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1944,376,901 - 44,388,758 (-)NCBI
Celera945,135,653 - 45,279,153 (-)NCBICelera
Cytogenetic Map9q22NCBI
Col5a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554039,562,401 - 9,703,828 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554039,562,401 - 9,703,828 (+)NCBIChiLan1.0ChiLan1.0
COL5A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B194,259,316 - 194,407,237 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B194,259,316 - 194,407,237 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B76,339,756 - 76,487,133 (-)NCBIMhudiblu_PPA_v0panPan3
COL5A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13630,538,863 - 30,677,450 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3630,540,229 - 30,691,564 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3630,444,268 - 30,596,870 (-)NCBI
ROS_Cfam_1.03630,769,002 - 30,921,527 (-)NCBI
UMICH_Zoey_3.13630,829,323 - 30,981,791 (-)NCBI
UNSW_CanFamBas_1.03630,765,542 - 30,917,922 (-)NCBI
UU_Cfam_GSD_1.03630,934,376 - 31,087,519 (-)NCBI
Col5a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303147,964,999 - 148,098,596 (-)NCBI
SpeTri2.0NW_0049365068,739,475 - 8,873,073 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL5A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1593,611,856 - 93,981,110 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11593,611,856 - 93,981,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215104,122,882 - 104,272,687 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL5A2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11074,509,704 - 74,659,251 (-)NCBI
ChlSab1.1 Ensembl1074,507,772 - 74,659,366 (-)Ensembl
Vero_WHO_p1.0NW_023666040124,813,969 - 124,963,385 (+)NCBI
Col5a2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248991,035,797 - 1,175,394 (+)NCBI

Position Markers
35.MMHAP59FRD11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,501,926 - 45,502,105UniSTSGRCm38
MGSCv37145,558,771 - 45,558,950UniSTSGRCm37
Celera145,810,615 - 45,810,794UniSTS
Cytogenetic Map1C1UniSTS
Whitehead_YAC1 UniSTS
D1Mit236  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,378,613 - 45,378,760UniSTSGRCm38
MGSCv37145,435,458 - 45,435,605UniSTSGRCm37
Celera145,679,690 - 45,679,823UniSTS
Cytogenetic Map1C1UniSTS
cM Map125.7UniSTS
Whitehead Genetic125.1UniSTS
Whitehead/MRC_RH1737.71UniSTS
Whitehead_YAC1 UniSTS
AW558340  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,375,965 - 45,376,108UniSTSGRCm38
MGSCv37145,432,810 - 45,432,953UniSTSGRCm37
Celera145,677,072 - 45,677,215UniSTS
Cytogenetic Map1C1UniSTS
Whitehead/MRC_RH1737.81UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11902627053026373Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11902627053026373Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11902627053026373Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11930000053300000Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12307051073937756Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2551111058234112Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12551111062907723Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12600000060000000Mouse
1357822Lvrq3_mliver weight QTL 3 (mouse)Not determined13472105773937756Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13472105773937756Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13472105773937756Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13472105773937756Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13472105773937756Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13472105773937756Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13472105773937756Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13909372774477206Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139093727126517573Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14082884867231097Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14082884867231097Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14082884867231097Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14123396575234112Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14123624075236240Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4222050876220508Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14289887276899008Mouse
12050090Shm1_msperm head morphology 1 (mouse)14414774450777776Mouse
12879917Shm3_msperm head morphology 3 (mouse)14414774462907723Mouse
10412179Habiir1_mhyperoxic acute lung injury imprinted region 1 (mouse)Not determined14537861351924960Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14537861372935898Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:653
Count of miRNA genes:472
Interacting mature miRNAs:528
Transcripts:ENSMUST00000086430, ENSMUST00000131535, ENSMUST00000134681, ENSMUST00000150143
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L02918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000086430   ⟹   ENSMUSP00000083620
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl145,374,321 - 45,503,282 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131535
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl145,417,474 - 45,422,411 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl145,414,199 - 45,503,282 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150143
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl145,389,031 - 45,393,634 (-)Ensembl
RefSeq Acc Id: NM_007737   ⟹   NP_031763
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39145,413,491 - 45,542,442 (-)NCBI
GRCm38145,374,331 - 45,503,282 (-)ENTREZGENE
MGSCv37145,431,176 - 45,560,127 (-)RGD
Celera145,675,438 - 45,811,971 (-)RGD
cM Map1 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031763   ⟸   NM_007737
- Peptide Label: preproprotein
- UniProtKB: Q3U962 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000083620   ⟸   ENSMUST00000086430
Protein Domains
Fibrillar collagen NC1   VWFC

Promoters
RGD ID:6817534
Promoter ID:MM_KWN:627
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050642
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36145,450,446 - 45,451,167 (-)MPROMDB
RGD ID:6817536
Promoter ID:MM_KWN:628
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050643
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36145,479,046 - 45,480,047 (-)MPROMDB
RGD ID:6817531
Promoter ID:MM_KWN:629
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4
Transcripts:ENSMUST00000114615
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36145,499,796 - 45,500,296 (-)MPROMDB
RGD ID:6873636
Promoter ID:EPDNEW_M269
Type:initiation region
Name:Col5a2_1
Description:Mus musculus collagen, type V, alpha 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38145,503,063 - 45,503,123EPDNEW
RGD ID:6817533
Promoter ID:MM_KWN:630
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000086430,   OTTMUST00000050641
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36145,559,816 - 45,560,817 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88458 AgrOrtholog
Ensembl Genes ENSMUSG00000026042 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000083620 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000086430 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fib_collagen_C UniProtKB/Swiss-Prot
  VWF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12832 UniProtKB/Swiss-Prot
MGD MGI:88458 ENTREZGENE
NCBI Gene 12832 ENTREZGENE
Pfam COLFI UniProtKB/Swiss-Prot
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Col5a2 PhenoGen
PROSITE NC1_FIB UniProtKB/Swiss-Prot
  VWFC_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFC_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART COLFI UniProtKB/Swiss-Prot
  VWC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CO5A2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BNA3_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3TVR2 UniProtKB/Swiss-Prot
  Q3UHK7 UniProtKB/Swiss-Prot
  Q3UTT4 UniProtKB/Swiss-Prot
  Q3V1J6 UniProtKB/Swiss-Prot
  Q61431 UniProtKB/Swiss-Prot
  Q7TMS0 UniProtKB/Swiss-Prot
  Q80VS8 UniProtKB/Swiss-Prot