Tnr (tenascin R) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tnr (tenascin R) Mus musculus
Analyze
Symbol: Tnr
Name: tenascin R
RGD ID: 737228
MGI Page MGI
Description: Predicted to enable integrin binding activity. Involved in several processes, including modulation of chemical synaptic transmission; negative regulation of neuron projection development; and regulation of cell migration. Acts upstream of or within several processes, including locomotory exploration behavior; modulation of chemical synaptic transmission; and negative regulation of axon extension involved in regeneration. Located in cell surface; membrane raft; and perineuronal net. Part of tenascin complex. Is active in Schaffer collateral - CA1 synapse and glutamatergic synapse. Is expressed in several structures, including aorta tunica media; brain; heart; urinary system; and ventral grey horn. Orthologous to human TNR (tenascin R).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: J1-ten; J1-tenascin; ja; janusin; neural recognition molecule J1-160/180; rest; restrictin; tenascin-R; TN; TN-R
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,351,170 - 159,759,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,351,339 - 159,759,299 (+)EnsemblGRCm39 Ensembl
GRCm381159,523,729 - 159,931,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,523,769 - 159,931,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,453,900 - 161,855,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,360,446 - 161,761,152 (+)NCBIMGSCv36mm8
Celera1161,927,416 - 162,333,803 (+)NCBICelera
Cytogenetic Map1H1NCBI
cM Map169.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1696875   PMID:2477380   PMID:7527058   PMID:7530141   PMID:7530142   PMID:7678967   PMID:7694605   PMID:8244531   PMID:8261110   PMID:9169525   PMID:9371410   PMID:9405406  
PMID:10101119   PMID:10341229   PMID:10349636   PMID:10383637   PMID:10406848   PMID:10773191   PMID:10793198   PMID:11042159   PMID:11076861   PMID:11077416   PMID:11161481   PMID:11217851  
PMID:11377840   PMID:12056833   PMID:12477932   PMID:12532406   PMID:12882316   PMID:12927810   PMID:14529817   PMID:14681222   PMID:15026125   PMID:15033179   PMID:15034584   PMID:15694392  
PMID:16141072   PMID:16141073   PMID:16262627   PMID:16262655   PMID:16831557   PMID:16870730   PMID:17537973   PMID:17967808   PMID:18287559   PMID:18499893   PMID:18658130   PMID:19141078  
PMID:19178559   PMID:19459213   PMID:19554387   PMID:20110269   PMID:20194688   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23637166   PMID:23744080   PMID:23785146   PMID:24337573  
PMID:24338367   PMID:24625978   PMID:25225104   PMID:26190982   PMID:26621125   PMID:27798109   PMID:28512860   PMID:28630288   PMID:28671696   PMID:28706196   PMID:29367009   PMID:30562941  
PMID:31558805   PMID:31822561   PMID:32325033   PMID:32560809   PMID:32581705   PMID:34083437   PMID:34321999   PMID:35681468   PMID:35721494   PMID:36808153   PMID:37126510   PMID:37142655  
PMID:37580626   PMID:38318351   PMID:38355793  


Genomics

Comparative Map Data
Tnr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,351,170 - 159,759,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,351,339 - 159,759,299 (+)EnsemblGRCm39 Ensembl
GRCm381159,523,729 - 159,931,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,523,769 - 159,931,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,453,900 - 161,855,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,360,446 - 161,761,152 (+)NCBIMGSCv36mm8
Celera1161,927,416 - 162,333,803 (+)NCBICelera
Cytogenetic Map1H1NCBI
cM Map169.03NCBI
TNR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381175,315,194 - 175,743,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1175,315,194 - 175,743,595 (-)EnsemblGRCh38hg38GRCh38
GRCh371175,284,330 - 175,712,731 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,558,558 - 173,979,375 (-)NCBINCBI36Build 36hg18NCBI36
Build 341172,023,591 - 172,107,588NCBI
Celera1148,402,646 - 148,823,466 (-)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1146,518,289 - 146,939,502 (-)NCBIHuRef
CHM1_11176,714,839 - 177,136,331 (-)NCBICHM1_1
T2T-CHM13v2.01174,669,251 - 175,098,445 (-)NCBIT2T-CHM13v2.0
Tnr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81374,285,141 - 74,706,174 (+)NCBIGRCr8
mRatBN7.21371,751,714 - 72,172,731 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1372,091,585 - 72,167,641 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1374,669,906 - 74,745,851 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01375,968,796 - 76,044,850 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01373,228,183 - 73,304,243 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01377,602,249 - 77,678,385 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1377,485,113 - 77,678,437 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,511,491 - 82,587,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,271,116 - 75,347,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11375,285,303 - 75,361,369 (+)NCBI
Celera1371,896,221 - 71,972,111 (+)NCBICelera
Cytogenetic Map13q22NCBI
Tnr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540615,088,843 - 15,282,937 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540615,007,248 - 15,512,219 (-)NCBIChiLan1.0ChiLan1.0
TNR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2173,986,128 - 74,416,537 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1173,659,533 - 74,089,881 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01150,826,892 - 151,257,301 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11154,532,462 - 154,954,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1154,532,582 - 154,615,538 (-)Ensemblpanpan1.1panPan2
TNR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1723,721,227 - 24,125,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl724,019,095 - 24,122,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha723,245,784 - 23,649,456 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0723,467,664 - 23,871,975 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl723,467,781 - 23,877,432 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1723,381,542 - 23,790,688 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0723,472,927 - 23,881,710 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0723,616,133 - 24,025,964 (+)NCBIUU_Cfam_GSD_1.0
Tnr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934494,739,675 - 95,125,605 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648112,787,536 - 12,965,327 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648112,586,460 - 12,972,348 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,373,545 - 117,771,224 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,365,930 - 117,790,332 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29129,110,238 - 129,553,412 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12553,526,477 - 53,942,278 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605555,081,568 - 55,503,253 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247716,519,091 - 6,717,947 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247716,291,202 - 6,725,737 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:164
Count of miRNA genes:150
Interacting mature miRNAs:161
Transcripts:ENSMUST00000111669
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
4141075Bmd1a_mbone mineral density 1a (mouse)Not determined1155837814162145325Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1300611Tlln_mtail length (mouse)Not determined1155837814159390372Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156602037170803640Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
13452394Leusq1_mleucocytosis susceptibility QTL 1 (mouse)1156602037168186402Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301232Hcs7_mhepatocarcinogenesis susceptibility 7 (mouse)Not determined1156602037168186402Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse

Markers in Region
C86103  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,550,988 - 159,551,073UniSTSGRCm38
MGSCv371161,481,119 - 161,481,204UniSTSGRCm37
Celera1161,954,649 - 161,954,734UniSTS
Cytogenetic Map1E2UniSTS
Whitehead/MRC_RH12028.12UniSTS
29.MMHAP6FRB11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,757,135 - 159,757,297UniSTSGRCm38
MGSCv371161,687,266 - 161,687,428UniSTSGRCm37
Celera1162,165,622 - 162,165,784UniSTS
Cytogenetic Map1E2UniSTS
Whitehead/MRC_RH12054.82UniSTS
Whitehead_YAC1 UniSTS
D1Mit159  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,661,973 - 159,662,164UniSTSGRCm38
MGSCv371161,592,104 - 161,592,295UniSTSGRCm37
Celera1162,070,282 - 162,070,455UniSTS
Cytogenetic Map1E2UniSTS
cM Map181.6UniSTS
Whitehead Genetic182.0UniSTS
D1Mit159.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,661,856 - 159,661,974UniSTSGRCm38
MGSCv371161,591,987 - 161,592,105UniSTSGRCm37
Celera1162,070,165 - 162,070,283UniSTS
Cytogenetic Map1E2UniSTS
cM Map181.6UniSTS
cM Map1 UniSTS
Whitehead_YAC1 UniSTS
D1Mit219  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,562,662 - 159,562,802UniSTSGRCm38
MGSCv371161,492,793 - 161,492,933UniSTSGRCm37
Celera1161,966,294 - 161,966,434UniSTS
Cytogenetic Map1E2UniSTS
cM Map181.6UniSTS
Whitehead Genetic182.0UniSTS
Whitehead_YAC1 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC116773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY353974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000111669   ⟹   ENSMUSP00000107298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,565,080 - 159,751,967 (+)Ensembl
GRCm38.p6 Ensembl1159,737,510 - 159,924,397 (+)Ensembl
Ensembl Acc Id: ENSMUST00000192069   ⟹   ENSMUSP00000141553
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,351,339 - 159,759,299 (+)Ensembl
GRCm38.p6 Ensembl1159,523,769 - 159,931,729 (+)Ensembl
Ensembl Acc Id: ENSMUST00000192457   ⟹   ENSMUSP00000141509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,677,967 - 159,691,219 (+)Ensembl
GRCm38.p6 Ensembl1159,850,397 - 159,863,649 (+)Ensembl
Ensembl Acc Id: ENSMUST00000193325   ⟹   ENSMUSP00000141752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,601,340 - 159,677,912 (+)Ensembl
GRCm38.p6 Ensembl1159,773,770 - 159,850,342 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,351,411 - 159,565,365 (+)Ensembl
GRCm38.p6 Ensembl1159,523,841 - 159,737,795 (+)Ensembl
RefSeq Acc Id: NM_022312   ⟹   NP_071707
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,351,339 - 159,752,492 (+)NCBI
GRCm381159,523,769 - 159,924,922 (+)NCBI
MGSCv371161,453,900 - 161,855,053 (+)RGD
Celera1161,927,416 - 162,333,803 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496742   ⟹   XP_006496805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,351,317 - 159,759,299 (+)NCBI
GRCm381159,523,729 - 159,931,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006496743   ⟹   XP_006496806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,517,907 - 159,759,299 (+)NCBI
GRCm381159,687,813 - 159,931,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006496744   ⟹   XP_006496807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,601,173 - 159,759,299 (+)NCBI
GRCm381159,753,377 - 159,931,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006496745   ⟹   XP_006496808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,351,170 - 159,759,299 (+)NCBI
GRCm381159,523,729 - 159,931,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006496746   ⟹   XP_006496809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,351,340 - 159,759,299 (+)NCBI
GRCm381159,523,729 - 159,931,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252974   ⟹   XP_030108834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,436,335 - 159,759,299 (+)NCBI
GRCm381159,608,766 - 159,931,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252975   ⟹   XP_030108835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,517,938 - 159,759,299 (+)NCBI
GRCm381159,687,813 - 159,931,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252977   ⟹   XP_030108837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,351,292 - 159,759,299 (+)NCBI
GRCm381159,523,729 - 159,931,729 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163559   ⟹   XP_036019452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,351,217 - 159,759,299 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163560   ⟹   XP_036019453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,351,288 - 159,759,299 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163561   ⟹   XP_036019454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,351,289 - 159,759,299 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163563   ⟹   XP_036019456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,517,907 - 159,759,299 (+)NCBI
Sequence:
RefSeq Acc Id: NP_071707   ⟸   NM_022312
- Peptide Label: precursor
- UniProtKB: A2RT70 (UniProtKB/Swiss-Prot),   O88717 (UniProtKB/Swiss-Prot),   Q8BYI9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496805   ⟸   XM_006496742
- Peptide Label: isoform X1
- UniProtKB: A2RT70 (UniProtKB/Swiss-Prot),   O88717 (UniProtKB/Swiss-Prot),   Q8BYI9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496808   ⟸   XM_006496745
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006496806   ⟸   XM_006496743
- Peptide Label: isoform X1
- UniProtKB: A2RT70 (UniProtKB/Swiss-Prot),   O88717 (UniProtKB/Swiss-Prot),   Q8BYI9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496807   ⟸   XM_006496744
- Peptide Label: isoform X1
- UniProtKB: A2RT70 (UniProtKB/Swiss-Prot),   O88717 (UniProtKB/Swiss-Prot),   Q8BYI9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496809   ⟸   XM_006496746
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030108837   ⟸   XM_030252977
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030108834   ⟸   XM_030252974
- Peptide Label: isoform X1
- UniProtKB: Q8BYI9 (UniProtKB/Swiss-Prot),   A2RT70 (UniProtKB/Swiss-Prot),   O88717 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030108835   ⟸   XM_030252975
- Peptide Label: isoform X1
- UniProtKB: Q8BYI9 (UniProtKB/Swiss-Prot),   A2RT70 (UniProtKB/Swiss-Prot),   O88717 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000107298   ⟸   ENSMUST00000111669
Ensembl Acc Id: ENSMUSP00000141752   ⟸   ENSMUST00000193325
Ensembl Acc Id: ENSMUSP00000141509   ⟸   ENSMUST00000192457
Ensembl Acc Id: ENSMUSP00000141553   ⟸   ENSMUST00000192069
RefSeq Acc Id: XP_036019452   ⟸   XM_036163559
- Peptide Label: isoform X1
- UniProtKB: Q8BYI9 (UniProtKB/Swiss-Prot),   A2RT70 (UniProtKB/Swiss-Prot),   O88717 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036019453   ⟸   XM_036163560
- Peptide Label: isoform X1
- UniProtKB: Q8BYI9 (UniProtKB/Swiss-Prot),   A2RT70 (UniProtKB/Swiss-Prot),   O88717 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036019454   ⟸   XM_036163561
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019456   ⟸   XM_036163563
- Peptide Label: isoform X2
Protein Domains
EGF-like   Fibrinogen C-terminal   Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BYI9-F1-model_v2 AlphaFold Q8BYI9 1-1358 view protein structure

Promoters
RGD ID:6875398
Promoter ID:EPDNEW_M1150
Type:initiation region
Name:Tnr_1
Description:Mus musculus tenascin R , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1151  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381159,523,841 - 159,523,901EPDNEW
RGD ID:6875400
Promoter ID:EPDNEW_M1151
Type:single initiation site
Name:Tnr_2
Description:Mus musculus tenascin R , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1150  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381159,798,064 - 159,798,124EPDNEW
RGD ID:6818618
Promoter ID:MM_KWN:2579
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_022312
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361161,453,636 - 161,454,136 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99516 AgrOrtholog
Ensembl Genes ENSMUSG00000015829 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000111669.9 UniProtKB/Swiss-Prot
  ENSMUST00000192069 ENTREZGENE
  ENSMUST00000192069.6 UniProtKB/Swiss-Prot
  ENSMUST00000192457.2 UniProtKB/TrEMBL
  ENSMUST00000193325.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.215.10 UniProtKB/Swiss-Prot
  Laminin UniProtKB/Swiss-Prot
InterPro ECM_Regulatory_Proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/Swiss-Prot
  EGF_extracell UniProtKB/Swiss-Prot
  EGF_Tenascin UniProtKB/Swiss-Prot
  Fibrinogen-like_C UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_C_1 UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_C_dom UniProtKB/Swiss-Prot
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21960 UniProtKB/Swiss-Prot
MGD MGI:99516 ENTREZGENE
NCBI Gene 21960 ENTREZGENE
PANTHER TENASCIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TENASCIN-R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EGF_2 UniProtKB/Swiss-Prot
  EGF_Tenascin UniProtKB/Swiss-Prot
  Fibrinogen_C UniProtKB/Swiss-Prot
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tnr PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  FIBRINOGEN_C_2 UniProtKB/Swiss-Prot
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot
  FBG UniProtKB/Swiss-Prot
  FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56496 UniProtKB/Swiss-Prot
UniProt A0A0A6YWD9_MOUSE UniProtKB/TrEMBL
  A0A0A6YWY3_MOUSE UniProtKB/TrEMBL
  A2RT70 ENTREZGENE
  O88717 ENTREZGENE
  Q8BYI9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2RT70 UniProtKB/Swiss-Prot
  O88717 UniProtKB/Swiss-Prot