TNR (tenascin R) - Rat Genome Database
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Gene: TNR (tenascin R) Sus scrofa
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Symbol: TNR
Name: tenascin R
RGD ID: 14104789
Description: ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); negative regulation of axon extension (ortholog); negative regulation of cell adhesion (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); Gliosis (ortholog); Parkinson's disease (ortholog); FOUND IN extracellular matrix (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); perisynaptic extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: tenascin R (restrictin, janusin); tenascin-R
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,371,828 - 117,790,243 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,365,930 - 117,790,332 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29129,110,238 - 129,553,412 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
TNR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,371,828 - 117,790,243 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,365,930 - 117,790,332 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29129,110,238 - 129,553,412 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1175,315,194 - 175,743,616 (-)EnsemblGRCh38hg38GRCh38
GRCh381175,315,194 - 175,743,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371175,291,935 - 175,712,752 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,558,558 - 173,979,375 (-)NCBINCBI36hg18NCBI36
Build 341172,023,591 - 172,107,588NCBI
Celera1148,402,646 - 148,823,466 (-)NCBI
Cytogenetic Map1q25.1NCBI
HuRef1146,518,289 - 146,939,502 (-)NCBIHuRef
CHM1_11176,714,839 - 177,136,331 (-)NCBICHM1_1
Tnr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,351,170 - 159,759,299 (+)NCBIGRCm39mm39
GRCm381159,523,729 - 159,931,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,523,769 - 159,931,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,453,900 - 161,855,053 (+)NCBIGRCm37mm9NCBIm37
MGSCv361161,360,446 - 161,761,152 (+)NCBImm8
Celera1161,927,416 - 162,333,803 (+)NCBICelera
Cytogenetic Map1H1NCBI
Tnr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01377,602,249 - 77,678,385 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1377,485,113 - 77,678,437 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,511,491 - 82,587,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,271,116 - 75,347,181 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11375,285,303 - 75,361,369 (+)NCBI
Celera1371,896,221 - 71,972,111 (+)NCBICelera
Cytogenetic Map13q22NCBI
Tnr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540615,088,843 - 15,282,937 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540615,007,248 - 15,512,219 (-)NCBIChiLan1.0ChiLan1.0
TNR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11154,532,462 - 154,954,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1154,532,582 - 154,615,538 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01150,826,892 - 151,257,301 (-)NCBIMhudiblu_PPA_v0panPan3
TNR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl724,019,095 - 24,122,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1723,721,227 - 24,125,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tnr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648112,586,460 - 12,972,348 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNR
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12553,526,477 - 53,942,278 (+)NCBI
Tnr
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247716,291,202 - 6,725,737 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium 11
Low 3 12
Below cutoff 4 2 5 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016895   ⟹   ENSSSCP00000016444
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,373,545 - 117,790,243 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000050478   ⟹   ENSSSCP00000044539
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,397,070 - 117,790,243 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000066712   ⟹   ENSSSCP00000060729
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9117,371,828 - 117,452,922 (-)Ensembl
RefSeq Acc Id: XM_013989629   ⟹   XP_013845083
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,365,930 - 117,790,332 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063665   ⟹   XP_020919324
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,365,930 - 117,790,332 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063666   ⟹   XP_020919325
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,365,930 - 117,790,332 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063667   ⟹   XP_020919326
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,365,930 - 117,617,050 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021063668   ⟹   XP_020919327
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19117,365,930 - 117,449,539 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020919325   ⟸   XM_021063666
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013845083   ⟸   XM_013989629
- Peptide Label: isoform X1
- UniProtKB: F1S706 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919324   ⟸   XM_021063665
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020919326   ⟸   XM_021063667
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020919327   ⟸   XM_021063668
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000044539   ⟸   ENSSSCT00000050478
RefSeq Acc Id: ENSSSCP00000016444   ⟸   ENSSSCT00000016895
RefSeq Acc Id: ENSSSCP00000060729   ⟸   ENSSSCT00000066712

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015508 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070015744 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016444 UniProtKB/TrEMBL
  ENSSSCP00000044539 UniProtKB/TrEMBL
  ENSSSCP00000060729 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070025857 UniProtKB/TrEMBL
  ENSSSCP00070025873 UniProtKB/TrEMBL
  ENSSSCP00070025882 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016895 UniProtKB/TrEMBL
  ENSSSCT00000050478 UniProtKB/TrEMBL
  ENSSSCT00000066712 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070031000 UniProtKB/TrEMBL
  ENSSSCT00070031017 UniProtKB/TrEMBL
  ENSSSCT00070031028 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  EGF_Tenascin UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  TNR UniProtKB/TrEMBL
KEGG Report ssc:100520686 UniProtKB/TrEMBL
NCBI Gene TNR ENTREZGENE
PANTHER PTHR19143:SF254 UniProtKB/TrEMBL
Pfam EGF_Tenascin UniProtKB/TrEMBL
  Fibrinogen_C UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  FBG UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt A0A287AKK6_PIG UniProtKB/TrEMBL
  A0A481CFE3_PIG UniProtKB/TrEMBL
  A0A4X1U7Z3_PIG UniProtKB/TrEMBL
  A0A4X1UCU5_PIG UniProtKB/TrEMBL
  A0A5G2Q9T4_PIG UniProtKB/TrEMBL
  F1S706 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94290 ENTREZGENE