TNR (tenascin R) - Rat Genome Database
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Gene: TNR (tenascin R) Canis lupus familiaris
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Symbol: TNR
Name: tenascin R
RGD ID: 12319514
Description: ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN associative learning (ortholog); extracellular matrix organization (ortholog); locomotory exploration behavior (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); Gliosis (ortholog); Parkinson's disease (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: tenascin-R; tenascin R (restrictin, janusin); tenascin-R
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl724,019,095 - 24,122,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1723,721,227 - 24,125,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
TNR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl724,019,095 - 24,122,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1723,721,227 - 24,125,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
TNR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1175,315,194 - 175,743,616 (-)EnsemblGRCh38hg38GRCh38
GRCh381175,315,194 - 175,743,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371175,291,935 - 175,712,752 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361173,558,558 - 173,979,375 (-)NCBINCBI36hg18NCBI36
Build 341172,023,591 - 172,107,588NCBI
Celera1148,402,646 - 148,823,466 (-)NCBI
Cytogenetic Map1q25.1NCBI
HuRef1146,518,289 - 146,939,502 (-)NCBIHuRef
CHM1_11176,714,839 - 177,136,331 (-)NCBICHM1_1
Tnr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,351,170 - 159,759,299 (+)NCBIGRCm39mm39
GRCm381159,523,729 - 159,931,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,523,769 - 159,931,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,453,900 - 161,855,053 (+)NCBIGRCm37mm9NCBIm37
MGSCv361161,360,446 - 161,761,152 (+)NCBImm8
Celera1161,927,416 - 162,333,803 (+)NCBICelera
Cytogenetic Map1H1NCBI
Tnr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01377,602,249 - 77,678,385 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1377,485,113 - 77,678,437 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01382,511,491 - 82,587,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41375,271,116 - 75,347,181 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11375,285,303 - 75,361,369 (+)NCBI
Celera1371,896,221 - 71,972,111 (+)NCBICelera
Cytogenetic Map13q22NCBI
Tnr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540615,088,843 - 15,282,937 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540615,007,248 - 15,512,219 (-)NCBIChiLan1.0ChiLan1.0
TNR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11154,532,462 - 154,954,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1154,532,582 - 154,615,538 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01150,826,892 - 151,257,301 (-)NCBIMhudiblu_PPA_v0panPan3
Tnr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648112,586,460 - 12,972,348 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9117,371,828 - 117,790,243 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19117,365,930 - 117,790,332 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29129,110,238 - 129,553,412 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNR
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12553,526,477 - 53,942,278 (+)NCBI
Tnr
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247716,291,202 - 6,725,737 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low 6 1 12
Below cutoff 5 5 14 4 5 4 6 6 8 10 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000022732   ⟹   ENSCAFP00000021113
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl724,019,095 - 24,122,530 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000049423   ⟹   ENSCAFP00000036108
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl724,019,095 - 24,122,530 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000076564   ⟹   ENSCAFP00000052407
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl724,019,095 - 24,097,647 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078812   ⟹   ENSCAFP00000062377
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl724,019,095 - 24,122,530 (+)Ensembl
RefSeq Acc Id: XM_547454   ⟹   XP_547454
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1723,721,227 - 24,125,183 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038337001 (Get FASTA)   NCBI Sequence Viewer  
  XP_038398359 (Get FASTA)   NCBI Sequence Viewer  
  XP_038462516 (Get FASTA)   NCBI Sequence Viewer  
  XP_038527192 (Get FASTA)   NCBI Sequence Viewer  
  XP_547454 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_547454   ⟸   XM_547454
- Sequence:
RefSeq Acc Id: ENSCAFP00000062377   ⟸   ENSCAFT00000078812
RefSeq Acc Id: ENSCAFP00000036108   ⟸   ENSCAFT00000049423
RefSeq Acc Id: ENSCAFP00000052407   ⟸   ENSCAFT00000076564
RefSeq Acc Id: ENSCAFP00000021113   ⟸   ENSCAFT00000022732

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014301 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000021113 UniProtKB/TrEMBL
  ENSCAFP00000036108 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000052407 UniProtKB/TrEMBL
  ENSCAFP00000062377 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022732 UniProtKB/TrEMBL
  ENSCAFT00000049423 UniProtKB/TrEMBL
  ENSCAFT00000076564 UniProtKB/TrEMBL
  ENSCAFT00000078812 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  EGF_Tenascin UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  TNR UniProtKB/TrEMBL
KEGG Report cfa:490334 UniProtKB/TrEMBL
NCBI Gene TNR ENTREZGENE
PANTHER PTHR19143:SF254 UniProtKB/TrEMBL
Pfam EGF_Tenascin UniProtKB/TrEMBL
  Fibrinogen_C UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  FBG UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt A0A5F4CDS2_CANLF UniProtKB/TrEMBL
  A0A5F4D9C9_CANLF UniProtKB/TrEMBL
  F1P798_CANLF UniProtKB/TrEMBL
  J9NRI4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47697 ENTREZGENE