Washc1 (WASH complex subunit 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Washc1 (WASH complex subunit 1) Mus musculus
Analyze
Symbol: Washc1
Name: WASH complex subunit 1
RGD ID: 1320954
MGI Page MGI
Description: Enables gamma-tubulin binding activity and phosphatidylinositol 3-kinase inhibitor activity. Involved in several processes, including Arp2/3 complex-mediated actin nucleation; meiotic nuclear division; and oocyte maturation. Acts upstream of or within several processes, including low-density lipoprotein particle clearance; positive regulation of cholesterol import; and positive regulation of protein localization to cell surface. Located in autophagosome; centrosome; and endosome. Part of BLOC-1 complex and WASH complex. Is expressed in several structures, including brain; genitourinary system; immune system; liver; and lung. Orthologous to several human genes including WASHC1 (WASH complex subunit 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110049F14Rik; ORF19; Wa; Was; WAS protein family homolog 1; Wash; Wash1
RGD Orthologs
Human
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,418,524 - 66,427,498 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,418,540 - 66,427,498 (+)EnsemblGRCm39 Ensembl
GRCm381766,111,529 - 66,120,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1766,111,545 - 66,120,503 (+)EnsemblGRCm38mm10GRCm38
MGSCv371766,460,886 - 66,469,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361766,011,089 - 66,020,046 (+)NCBIMGSCv36mm8
Celera1770,419,820 - 70,428,779 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
autophagosome  (IDA)
BLOC-1 complex  (IDA)
centriole  (IEA)
centrosome  (IDA)
cytosol  (IEA)
early endosome  (IBA,IDA,ISO,ISS)
early endosome membrane  (NAS)
endosome  (IDA)
exocyst  (ISO)
filopodium  (ISO)
lamellipodium  (ISO)
late endosome  (IDA)
recycling endosome  (IBA,IDA,ISO)
recycling endosome membrane  (IEA)
WASH complex  (IBA,IDA,ISO,ISS,NAS)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Retromer and sorting nexins in endosomal sorting. Gallon M and Cullen PJ, Biochem Soc Trans. 2015 Feb;43(1):33-47. doi: 10.1042/BST20140290.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11701968   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16919471   PMID:18799693   PMID:19922874   PMID:19922875  
PMID:20308062   PMID:21267068   PMID:21873635   PMID:22718907   PMID:23275443   PMID:23452853   PMID:23974797   PMID:24344185   PMID:24886983   PMID:24980959   PMID:24998208   PMID:25225459  
PMID:26496610   PMID:26965651   PMID:27390154   PMID:27927957   PMID:28589939   PMID:29893854   PMID:30425062   PMID:31040226   PMID:31167970   PMID:32325033   PMID:32492429   PMID:32879135  
PMID:38086439  


Genomics

Comparative Map Data
Washc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,418,524 - 66,427,498 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,418,540 - 66,427,498 (+)EnsemblGRCm39 Ensembl
GRCm381766,111,529 - 66,120,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1766,111,545 - 66,120,503 (+)EnsemblGRCm38mm10GRCm38
MGSCv371766,460,886 - 66,469,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361766,011,089 - 66,020,046 (+)NCBIMGSCv36mm8
Celera1770,419,820 - 70,428,779 (+)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.26NCBI
WASHC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38914,513 - 30,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl914,475 - 73,865 (-)EnsemblGRCh38hg38GRCh38
GRCh37914,513 - 29,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y57,764,816 - 57,767,433 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9p24.3NCBI
CHM1_1914,312 - 29,934 (-)NCBICHM1_1
T2T-CHM13v2.098,314 - 23,877 (-)NCBIT2T-CHM13v2.0
Washc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89113,169,730 - 113,179,829 (+)NCBIGRCr8
mRatBN7.29105,722,779 - 105,830,836 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9105,722,899 - 105,733,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9114,131,463 - 114,141,570 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09119,241,477 - 119,251,568 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09117,597,316 - 117,607,423 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09113,918,914 - 113,936,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9113,918,858 - 113,936,860 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09113,443,351 - 113,459,272 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,885,755 - 104,896,516 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19105,095,204 - 105,105,650 (+)NCBI
Celera9103,300,490 - 103,302,995 (-)NCBICelera
Cytogenetic Map9q37NCBI
WASHC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12742,102,694 - 42,118,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2742,099,886 - 42,116,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,564,689 - 4,581,124 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02742,461,263 - 42,477,702 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2742,461,240 - 42,477,688 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12742,402,542 - 42,419,383 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02742,372,199 - 42,388,638 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,924,862 - 3,941,306 (+)NCBIUU_Cfam_GSD_1.0
Washc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945108,955,066 - 108,974,812 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936606209,289 - 228,986 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASHC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl567,394,875 - 67,412,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1567,395,737 - 67,412,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2569,630,618 - 69,644,438 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WASHC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,075 - 27,633 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,116 - 22,842 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660638,319,471 - 8,337,957 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Washc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624828249,994 - 269,347 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Washc1
363 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:950
Count of miRNA genes:369
Interacting mature miRNAs:405
Transcripts:ENSMUST00000072383, ENSMUST00000116556
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
4142201Obrq15_mobesity resistance QTL 15 (mouse)Not determined5753444780885776Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)175000702870006995Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ304796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY275336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY339670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000072383   ⟹   ENSMUSP00000072220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1766,418,540 - 66,427,498 (+)Ensembl
GRCm38.p6 Ensembl1766,111,545 - 66,120,503 (+)Ensembl
Ensembl Acc Id: ENSMUST00000116556   ⟹   ENSMUSP00000112255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1766,418,640 - 66,426,442 (+)Ensembl
GRCm38.p6 Ensembl1766,111,645 - 66,119,447 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1766,423,039 - 66,424,269 (+)Ensembl
GRCm38.p6 Ensembl1766,116,044 - 66,117,274 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1766,423,269 - 66,424,166 (+)Ensembl
GRCm38.p6 Ensembl1766,116,274 - 66,117,171 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233354   ⟹   ENSMUSP00000156933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1766,418,648 - 66,421,009 (+)Ensembl
GRCm38.p6 Ensembl1766,111,653 - 66,114,014 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1766,418,548 - 66,421,195 (+)Ensembl
GRCm38.p6 Ensembl1766,111,553 - 66,114,200 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1766,422,695 - 66,424,286 (+)Ensembl
GRCm38.p6 Ensembl1766,115,700 - 66,117,291 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1766,422,680 - 66,423,756 (+)Ensembl
GRCm38.p6 Ensembl1766,115,685 - 66,116,761 (+)Ensembl
RefSeq Acc Id: NM_001037757   ⟹   NP_001032846
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391766,418,640 - 66,427,498 (+)NCBI
GRCm381766,111,645 - 66,120,503 (+)NCBI
MGSCv371766,460,886 - 66,469,843 (+)RGD
Celera1770,419,820 - 70,428,779 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026833   ⟹   NP_081109
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391766,418,541 - 66,427,498 (+)NCBI
GRCm381766,111,546 - 66,120,503 (+)ENTREZGENE
MGSCv371766,460,886 - 66,469,843 (+)RGD
Celera1770,419,820 - 70,428,779 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006524859   ⟹   XP_006524922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391766,418,655 - 66,426,445 (+)NCBI
GRCm381766,111,656 - 66,119,450 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524860   ⟹   XP_006524923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391766,418,669 - 66,426,445 (+)NCBI
GRCm381766,111,700 - 66,119,450 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250021   ⟹   XP_030105881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391766,418,524 - 66,426,445 (+)NCBI
GRCm381766,111,529 - 66,119,450 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250022   ⟹   XP_030105882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391766,418,640 - 66,426,445 (+)NCBI
GRCm381766,111,645 - 66,119,450 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250023   ⟹   XP_030105883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391766,418,722 - 66,426,445 (+)NCBI
GRCm381766,111,656 - 66,119,450 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250024   ⟹   XP_030105884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391766,418,751 - 66,426,445 (+)NCBI
GRCm381766,111,756 - 66,119,450 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081109   ⟸   NM_026833
- UniProtKB: Q3U473 (UniProtKB/Swiss-Prot),   Q8VDD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001032846   ⟸   NM_001037757
- UniProtKB: Q3U473 (UniProtKB/Swiss-Prot),   Q8VDD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524922   ⟸   XM_006524859
- Peptide Label: isoform X2
- UniProtKB: Q3U473 (UniProtKB/Swiss-Prot),   Q8VDD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524923   ⟸   XM_006524860
- Peptide Label: isoform X2
- UniProtKB: Q3U473 (UniProtKB/Swiss-Prot),   Q8VDD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030105881   ⟸   XM_030250021
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030105882   ⟸   XM_030250022
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030105883   ⟸   XM_030250023
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030105884   ⟸   XM_030250024
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000072220   ⟸   ENSMUST00000072383
Ensembl Acc Id: ENSMUSP00000156933   ⟸   ENSMUST00000233354
Ensembl Acc Id: ENSMUSP00000112255   ⟸   ENSMUST00000116556
Protein Domains
WASH1 WAHD   WH2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VDD8-F1-model_v2 AlphaFold Q8VDD8 1-475 view protein structure

Promoters
RGD ID:13676648
Promoter ID:EPDNEW_M22473
Type:initiation region
Name:Washc1_1
Description:Mus musculus WASH complex subunit 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381766,111,625 - 66,111,685EPDNEW
RGD ID:6828454
Promoter ID:MM_KWN:24025
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000116556,   NM_026833
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361766,460,694 - 66,461,194 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916017 AgrOrtholog
Ensembl Genes ENSMUSG00000024101 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072383 ENTREZGENE
  ENSMUST00000072383.14 UniProtKB/Swiss-Prot
  ENSMUST00000116556 ENTREZGENE
  ENSMUST00000116556.4 UniProtKB/Swiss-Prot
  ENSMUST00000233354.2 UniProtKB/TrEMBL
InterPro WASH1 UniProtKB/Swiss-Prot
  WASH1_WAHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH2_dom UniProtKB/Swiss-Prot
KEGG Report mmu:68767 UniProtKB/Swiss-Prot
MGD MGI:1916017 ENTREZGENE
NCBI Gene 68767 ENTREZGENE
PANTHER PTHR23331 UniProtKB/Swiss-Prot
  WAS PROTEIN FAMILY HOMOLOG 2-RELATED UniProtKB/Swiss-Prot
Pfam WASH_WAHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Washc1 PhenoGen
PROSITE WH2 UniProtKB/Swiss-Prot
UniProt A0A3B2WDA2_MOUSE UniProtKB/TrEMBL
  Q3U473 ENTREZGENE
  Q8VDD8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3U473 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-29 Washc1  WASH complex subunit 1  Wash1  WAS protein family homolog 1  Symbol and/or name change 5135510 APPROVED
2015-02-17 Wash1  WAS protein family homolog 1  Wash  WAS protein family homolog  Symbol and/or name change 5135510 APPROVED
2012-05-15 Wash  WAS protein family homolog  ORF19  open reading frame 19  Symbol and/or name change 5135510 APPROVED