Dag1 (dystroglycan 1) - Rat Genome Database
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Gene: Dag1 (dystroglycan 1) Mus musculus
Analyze
Symbol: Dag1
Name: dystroglycan 1
RGD ID: 1552006
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; musculature; and sensory organ. Used to study autosomal recessive limb-girdle muscular dystrophy type 2P; dilated cardiomyopathy; and lissencephaly. Human ortholog(s) of this gene implicated in Duchenne muscular dystrophy; autosomal recessive limb-girdle muscular dystrophy type 2D; autosomal recessive limb-girdle muscular dystrophy type 2P; congenital muscular dystrophy-dystroglycanopathy type A9; and inclusion body myositis. Orthologous to human DAG1 (dystroglycan 1).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: alpha-dystroglycan; beta-dystroglycan; D9Wsu13; D9Wsu13e; DG; Dp427; Dp71; dystroglycan; dystrophin associated glycoprotein 1; dystrophin-associated glycoprotein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,082,060 - 108,141,176 (-)NCBIGRCm39mm39
GRCm39 Ensembl9108,081,833 - 108,141,157 (-)Ensembl
GRCm389108,204,861 - 108,263,977 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,204,634 - 108,263,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,108,289 - 108,166,067 (-)NCBIGRCm37mm9NCBIm37
MGSCv369108,064,059 - 108,121,837 (-)NCBImm8
Celera9107,814,579 - 107,872,572 (-)NCBICelera
Cytogenetic Map9F1- F2NCBI
cM Map959.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (ISO)
angiogenesis involved in wound healing  (ISO)
axon guidance  (IBA)
axon regeneration  (ISO)
basement membrane organization  (IMP)
branching involved in salivary gland morphogenesis  (IMP)
calcium-dependent cell-matrix adhesion  (ISO)
cellular response to cholesterol  (ISO)
cellular response to mechanical stimulus  (ISO)
commissural neuron axon guidance  (IMP)
epithelial tube branching involved in lung morphogenesis  (IMP)
membrane protein ectodomain proteolysis  (ISO)
microtubule anchoring  (ISO)
modulation by virus of host process  (ISO)
morphogenesis of an epithelial sheet  (IMP)
morphogenesis of an epithelium  (IBA)
muscle attachment  (IBA)
myelination in peripheral nervous system  (IMP)
negative regulation of cell migration  (ISO)
negative regulation of MAPK cascade  (ISO)
negative regulation of protein kinase B signaling  (ISO)
nerve development  (IBA)
nerve maturation  (IMP)
positive regulation of basement membrane assembly involved in embryonic body morphogenesis  (ISO)
positive regulation of cell-matrix adhesion  (ISO)
positive regulation of myelination  (ISO)
positive regulation of oligodendrocyte differentiation  (ISO)
positive regulation of protein kinase activity  (ISO)
regulation of epithelial to mesenchymal transition  (ISO)
regulation of gastrulation  (ISO)
regulation of neurotransmitter receptor localization to postsynaptic specialization membrane  (IDA,IMP)
regulation of synapse organization  (IDA,IMP)
response to denervation involved in regulation of muscle adaptation  (ISO)
response to peptide hormone  (ISO)
retrograde trans-synaptic signaling by trans-synaptic protein complex  (IDA,IMP)
Schwann cell development  (IMP)
Schwann cell differentiation  (ISO)
skeletal muscle tissue regeneration  (ISO)
viral process  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal action potential  (IAGP)
abnormal axon fasciculation  (IAGP)
abnormal axon guidance  (IAGP)
abnormal axon morphology  (IAGP)
abnormal basement membrane morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cardiac muscle contractility  (IAGP)
abnormal cerebellar cortex morphology  (IAGP)
abnormal cerebellum development  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal extraembryonic tissue morphology  (IAGP)
abnormal hippocampus CA1 region morphology  (IAGP)
abnormal hippocampus granule cell layer  (IAGP)
abnormal myelin sheath morphology  (IAGP)
abnormal nerve conduction  (IAGP)
abnormal neuromuscular synapse morphology  (IAGP)
abnormal neuronal migration  (IAGP)
abnormal Reichert's membrane morphology  (IAGP)
abnormal rod electrophysiology  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal spinal cord dorsal column morphology  (IAGP)
abnormal spinal cord ventral commissure morphology  (IAGP)
abnormal stratification in cerebral cortex  (IAGP)
abnormal subarachnoid space morphology  (IAGP)
absent extraembryonic ectoderm  (IAGP)
absent mesoderm  (IAGP)
anterior iris synechia  (IAGP)
astrocytosis  (IAGP)
blindness  (IAGP)
buphthalmos  (IAGP)
cardiac fibrosis  (IAGP)
centrally nucleated skeletal muscle fibers  (IAGP)
corneal opacity  (IAGP)
decreased embryo size  (IAGP)
decreased grip strength  (IAGP)
decreased nerve conduction velocity  (IAGP)
demyelination  (IAGP)
dilated cardiomyopathy  (IAGP)
dystrophic muscle  (IAGP)
embryonic growth arrest  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
failure to gastrulate  (IAGP)
increased body size  (IAGP)
increased brain size  (IAGP)
increased circulating creatine kinase level  (IAGP)
increased skeletal muscle fiber diameter  (IAGP)
increased skeletal muscle fiber size  (IAGP)
increased skeletal muscle weight  (IAGP)
increased susceptibility to injury  (IAGP)
increased variability of skeletal muscle fiber size  (IAGP)
limb grasping  (IAGP)
megacephaly  (IAGP)
microphthalmia  (IAGP)
mydriasis  (IAGP)
myocardial fiber degeneration  (IAGP)
no abnormal phenotype detected  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
radial glial endfoot detachment  (IAGP)
reduced long term potentiation  (IAGP)
skeletal muscle necrosis  (IAGP)
thin ventricular wall  (IAGP)
References

References - curated
1. Bedossa P, etal., Lab Invest. 2002 Aug;82(8):1053-61.
2. Chockalingam PS, etal., Am J Physiol Cell Physiol 2002 Aug;283(2):C500-11.
3. Concolino P, etal., Clin Chim Acta. 2007 Mar;378(1-2):164-7. Epub 2006 Nov 25.
4. Fortunato MJ, etal., PLoS One. 2014 May 13;9(5):e97567. doi: 10.1371/journal.pone.0097567. eCollection 2014.
5. Furumura M, etal., Proc Natl Acad Sci U S A 1998 Jun 23;95(13):7374-8.
6. Grewal PK, etal., Nat Genet 2001 Jun;28(2):151-4.
7. Hayashi YK, etal., Neurology. 2001 Jul 10;57(1):115-21.
8. Huizing M, etal., Mol Genet Metab. 2004 Mar;81(3):196-202.
9. Jimi T, etal., Muscle Nerve. 1995 Aug;18(8):910-3.
10. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
11. Leone L, etal., J Neuropathol Exp Neurol. 2005 Nov;64(11):1007-17.
12. Masaki T, etal., Med Electron Microsc. 2003 Dec;36(4):221-39.
13. Matsumura K, etal., Neuromuscul Disord. 2005 May;15(5):336-41.
14. MGD data from the GO Consortium
15. MGD IEA
16. Miyagawa S, etal., Circulation. 2002 May 28;105(21):2556-61.
17. Mulvey C, etal., Eur J Cell Biol. 2005 Nov;84(11):867-83.
18. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
19. OMIM Disease Annotation Pipeline
20. Persons DA, etal., Nat Genet 1999 Oct;23(2):159-65.
21. Pipeline to import KEGG annotations from KEGG into RGD
22. Qiu GP, etal., Neurosci Lett. 2015 Feb 19;588:42-8. doi: 10.1016/j.neulet.2014.12.053. Epub 2014 Dec 27.
23. RGD automated import pipeline
24. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
25. RGD automated import pipeline for gene-chemical interactions
26. Satz JS, etal., J Neurosci. 2008 Oct 15;28(42):10567-75. doi: 10.1523/JNEUROSCI.2457-08.2008.
27. Wappler EA, etal., Microvasc Res. 2011 Mar;81(2):153-9. doi: 10.1016/j.mvr.2010.12.005. Epub 2010 Dec 28.
Additional References at PubMed
PMID:1461282   PMID:1757468   PMID:7547961   PMID:7774920   PMID:7790379   PMID:7833916   PMID:7894483   PMID:8205617   PMID:8268918   PMID:8589441   PMID:8641130   PMID:8663016  
PMID:8872465   PMID:8950511   PMID:9057818   PMID:9175728   PMID:9245586   PMID:9524190   PMID:9659216   PMID:9727035   PMID:9790770   PMID:9864373   PMID:9917844   PMID:10349636  
PMID:10355629   PMID:10367882   PMID:10481911   PMID:10488149   PMID:10512203   PMID:10610181   PMID:10725249   PMID:10767327   PMID:10922068   PMID:10988290   PMID:11042159   PMID:11076861  
PMID:11115849   PMID:11178104   PMID:11217851   PMID:11245989   PMID:11259414   PMID:11381080   PMID:11423118   PMID:11430802   PMID:11487633   PMID:11502221   PMID:11520903   PMID:11544199  
PMID:11565031   PMID:11741881   PMID:11798066   PMID:11802174   PMID:12040032   PMID:12140558   PMID:12140559   PMID:12230980   PMID:12398834   PMID:12477932   PMID:12520002   PMID:12618313  
PMID:12670716   PMID:12702645   PMID:12795607   PMID:12797959   PMID:12843252   PMID:12904583   PMID:14516660   PMID:14610273   PMID:14622018   PMID:14627610   PMID:14678011   PMID:14723853  
PMID:15071496   PMID:15160389   PMID:15175275   PMID:15210115   PMID:15326183   PMID:15351499   PMID:15371519   PMID:15383666   PMID:15489334   PMID:15782199   PMID:15788414   PMID:15837576  
PMID:15840001   PMID:15913604   PMID:16023353   PMID:16098969   PMID:16141072   PMID:16141073   PMID:16221851   PMID:16254363   PMID:16254364   PMID:16394267   PMID:16436605   PMID:16447256  
PMID:16475793   PMID:16504180   PMID:16531403   PMID:16819976   PMID:16968749   PMID:17012237   PMID:17389231   PMID:17452335   PMID:17456771   PMID:17676646   PMID:17948866   PMID:17967808  
PMID:18030304   PMID:18171694   PMID:18287559   PMID:18556591   PMID:18579745   PMID:18586242   PMID:18596960   PMID:18641643   PMID:18680104   PMID:18794334   PMID:18799693   PMID:18930541  
PMID:18942111   PMID:18982058   PMID:19109891   PMID:19321787   PMID:19543532   PMID:19633189   PMID:19649270   PMID:19657058   PMID:19694806   PMID:19739104   PMID:19783738   PMID:19797173  
PMID:19800000   PMID:19809515   PMID:19846701   PMID:19931597   PMID:20016072   PMID:20044576   PMID:20054819   PMID:20142806   PMID:20213761   PMID:20369005   PMID:20493807   PMID:20544851  
PMID:20682766   PMID:20816174   PMID:20878767   PMID:20940259   PMID:20944549   PMID:20976766   PMID:20980614   PMID:21129441   PMID:21203384   PMID:21209007   PMID:21255062   PMID:21267068  
PMID:21289070   PMID:21388311   PMID:21452199   PMID:21460210   PMID:21501259   PMID:21533062   PMID:21862561   PMID:21865464   PMID:21873635   PMID:21900571   PMID:21903675   PMID:21930648  
PMID:22028625   PMID:22102469   PMID:22270369   PMID:22493004   PMID:22549772   PMID:22553019   PMID:22698694   PMID:22764250   PMID:22767514   PMID:22810924   PMID:22937058   PMID:22982027  
PMID:23147502   PMID:23217742   PMID:23673330   PMID:23722005   PMID:23793062   PMID:23940011   PMID:23951345   PMID:24006456   PMID:24256719   PMID:24598388   PMID:24599031   PMID:24687281  
PMID:24753587   PMID:24777283   PMID:24796807   PMID:24915007   PMID:25082828   PMID:25138275   PMID:25228692   PMID:25270874   PMID:25279699   PMID:25324540   PMID:25382142   PMID:25392494  
PMID:25646087   PMID:25704809   PMID:25715395   PMID:25932631   PMID:26435413   PMID:26627310   PMID:26751696   PMID:27449702   PMID:27561302   PMID:27569418   PMID:27625424   PMID:27707967  
PMID:27854211   PMID:28039900   PMID:28334989   PMID:28572004   PMID:28591570   PMID:28760865   PMID:28821434   PMID:29320543   PMID:29360985   PMID:29380551   PMID:29853630   PMID:30149005  
PMID:30282023   PMID:30758284   PMID:30814495   PMID:31097590   PMID:31356769   PMID:32325033  


Genomics

Comparative Map Data
Dag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,082,060 - 108,141,176 (-)NCBIGRCm39mm39
GRCm39 Ensembl9108,081,833 - 108,141,157 (-)Ensembl
GRCm389108,204,861 - 108,263,977 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,204,634 - 108,263,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv379108,108,289 - 108,166,067 (-)NCBIGRCm37mm9NCBIm37
MGSCv369108,064,059 - 108,121,837 (-)NCBImm8
Celera9107,814,579 - 107,872,572 (-)NCBICelera
Cytogenetic Map9F1- F2NCBI
cM Map959.08NCBI
DAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,468,703 - 49,535,618 (+)EnsemblGRCh38hg38GRCh38
GRCh38349,468,703 - 49,535,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,506,136 - 49,573,051 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,482,569 - 49,548,052 (+)NCBINCBI36hg18NCBI36
Build 34349,482,594 - 49,548,048NCBI
Celera349,470,589 - 49,537,675 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,565,602 - 49,632,289 (+)NCBIHuRef
CHM1_1349,458,558 - 49,525,426 (+)NCBICHM1_1
Dag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28108,890,926 - 108,955,611 (-)NCBI
Rnor_6.0 Ensembl8116,980,497 - 116,993,193 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08116,980,501 - 116,993,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,334,176 - 116,346,857 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,470,871 - 113,483,433 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18113,492,696 - 113,493,023 (-)NCBI
Celera8108,195,279 - 108,207,962 (-)NCBICelera
Cytogenetic Map8q32NCBI
Dag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,397,900 - 1,466,312 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,446,553 - 1,465,310 (+)NCBIChiLan1.0ChiLan1.0
DAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,637,707 - 50,703,852 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,640,615 - 50,703,852 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,396,180 - 49,464,689 (+)NCBIMhudiblu_PPA_v0panPan3
DAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,708,053 - 39,778,550 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,707,672 - 39,779,094 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,099,510 - 1,171,587 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,029,329 - 32,092,453 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,028,019 - 32,092,450 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DAG1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,864,058 - 10,934,179 (+)NCBI
ChlSab1.1 Ensembl2210,865,724 - 10,934,200 (+)Ensembl
Dag1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,417,356 - 3,488,300 (+)NCBI

Position Markers
38.MMHAP67FLE5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,249,409 - 108,249,563UniSTSGRCm38
MGSCv379108,151,740 - 108,151,894UniSTSGRCm37
Celera9107,857,800 - 107,857,954UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS
Whitehead_YAC9 UniSTS
D9Mit359  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,223,644 - 108,223,764UniSTSGRCm38
MGSCv379108,125,975 - 108,126,095UniSTSGRCm37
Celera9107,832,168 - 107,832,328UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS
Whitehead Genetic960.1UniSTS
Whitehead_YAC9 UniSTS
SSC24F05  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,206,003 - 108,206,137UniSTSGRCm38
MGSCv379108,108,334 - 108,108,468UniSTSGRCm37
Celera9107,814,624 - 107,814,758UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS
D3S3337  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,206,594 - 108,206,934UniSTSGRCm38
MGSCv379108,108,925 - 108,109,265UniSTSGRCm37
Celera9107,815,215 - 107,815,555UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS
Dag1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,208,497 - 108,208,742UniSTSGRCm38
MGSCv379108,110,828 - 108,111,073UniSTSGRCm37
Celera9107,817,118 - 107,817,363UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS
RH125695  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,204,993 - 108,205,143UniSTSGRCm38
MGSCv379108,107,324 - 108,107,474UniSTSGRCm37
Celera9107,813,614 - 107,813,764UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS
Whitehead/MRC_RH91108.73UniSTS
Dag1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,208,031 - 108,208,343UniSTSGRCm38
MGSCv379108,110,362 - 108,110,674UniSTSGRCm37
Celera9107,816,652 - 107,816,964UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1323
Count of miRNA genes:346
Interacting mature miRNAs:378
Transcripts:ENSMUST00000080435, ENSMUST00000166905, ENSMUST00000171412
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001276481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC168217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV085570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY256937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA327718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB289895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD578569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ106897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ130634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM141732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U43512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U48854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X86073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z34532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000080435   ⟹   ENSMUSP00000079294
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,205,944 - 108,263,815 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166905   ⟹   ENSMUSP00000128531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,205,955 - 108,263,918 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171412   ⟹   ENSMUSP00000130626
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,205,958 - 108,263,736 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191899   ⟹   ENSMUSP00000142109
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,204,634 - 108,263,958 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193701
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,252,840 - 108,263,751 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194698   ⟹   ENSMUSP00000141921
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,218,216 - 108,263,709 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195429   ⟹   ENSMUSP00000141385
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,218,178 - 108,263,751 (-)Ensembl
RefSeq Acc Id: NM_001276481   ⟹   NP_001263410
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,060 - 108,141,014 (-)NCBI
GRCm389108,204,861 - 108,263,815 (-)NCBI
Celera9107,813,482 - 107,872,794 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001276482   ⟹   NP_001263411
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,060 - 108,141,014 (-)NCBI
GRCm389108,204,861 - 108,263,815 (-)NCBI
Celera9107,813,482 - 107,872,794 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001276485   ⟹   NP_001263414
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,060 - 108,141,157 (-)NCBI
GRCm389108,204,861 - 108,263,958 (-)NCBI
Celera9107,813,482 - 107,872,794 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001276486   ⟹   NP_001263415
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,060 - 108,141,157 (-)NCBI
GRCm389108,204,861 - 108,263,958 (-)NCBI
Celera9107,813,482 - 107,872,794 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001276492   ⟹   NP_001263421
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,060 - 108,141,014 (-)NCBI
GRCm389108,204,861 - 108,263,815 (-)NCBI
Celera9107,813,482 - 107,872,794 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001276493   ⟹   NP_001263422
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,060 - 108,141,014 (-)NCBI
GRCm389108,204,861 - 108,263,815 (-)NCBI
Celera9107,813,482 - 107,872,794 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010017   ⟹   NP_034147
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,060 - 108,141,014 (-)NCBI
GRCm389108,204,861 - 108,263,815 (-)NCBI
MGSCv379108,108,289 - 108,166,067 (-)RGD
Celera9107,813,482 - 107,872,794 (-)NCBI
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511636   ⟹   XP_006511699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,065 - 108,141,151 (-)NCBI
GRCm389108,204,861 - 108,263,956 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244040   ⟹   XP_030099900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,065 - 108,140,966 (-)NCBI
GRCm389108,204,861 - 108,263,794 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244041   ⟹   XP_030099901
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,082,062 - 108,141,176 (-)NCBI
GRCm389108,204,861 - 108,263,977 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034147   ⟸   NM_010017
- Peptide Label: preproprotein
- UniProtKB: Q62165 (UniProtKB/Swiss-Prot),   Q544G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263414   ⟸   NM_001276485
- Peptide Label: preproprotein
- UniProtKB: Q62165 (UniProtKB/Swiss-Prot),   Q544G5 (UniProtKB/TrEMBL),   Q8BPJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263415   ⟸   NM_001276486
- Peptide Label: preproprotein
- UniProtKB: Q62165 (UniProtKB/Swiss-Prot),   Q544G5 (UniProtKB/TrEMBL),   Q8CBE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263411   ⟸   NM_001276482
- Peptide Label: preproprotein
- UniProtKB: Q62165 (UniProtKB/Swiss-Prot),   Q544G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263421   ⟸   NM_001276492
- Peptide Label: preproprotein
- UniProtKB: Q62165 (UniProtKB/Swiss-Prot),   Q544G5 (UniProtKB/TrEMBL),   Q8CBE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263422   ⟸   NM_001276493
- Peptide Label: preproprotein
- UniProtKB: Q62165 (UniProtKB/Swiss-Prot),   Q544G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263410   ⟸   NM_001276481
- Peptide Label: preproprotein
- UniProtKB: Q62165 (UniProtKB/Swiss-Prot),   Q544G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511699   ⟸   XM_006511636
- Peptide Label: isoform X1
- UniProtKB: Q62165 (UniProtKB/Swiss-Prot),   Q544G5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099901   ⟸   XM_030244041
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030099900   ⟸   XM_030244040
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000128531   ⟸   ENSMUST00000166905
RefSeq Acc Id: ENSMUSP00000142109   ⟸   ENSMUST00000191899
RefSeq Acc Id: ENSMUSP00000130626   ⟸   ENSMUST00000171412
RefSeq Acc Id: ENSMUSP00000079294   ⟸   ENSMUST00000080435
RefSeq Acc Id: ENSMUSP00000141385   ⟸   ENSMUST00000195429
RefSeq Acc Id: ENSMUSP00000141921   ⟸   ENSMUST00000194698
Protein Domains
Peptidase S72

Promoters
RGD ID:6848398
Promoter ID:MM_ACW:52007
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:DAG1.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,110,996 - 108,111,496 (-)MPROMDB
RGD ID:6849269
Promoter ID:MM_XEF:7675
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver,   Lung
Transcripts:NM_173274
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,111,409 - 108,111,909 (-)MPROMDB
RGD ID:6844392
Promoter ID:MM_KWN:58782
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000080435,   NM_010017,   UC009ROY.1,   UC009RPA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,166,056 - 108,166,867 (-)MPROMDB
RGD ID:8670868
Promoter ID:EPDNEW_M13465
Type:initiation region
Name:Dag1_1
Description:Mus musculus dystroglycan 1 , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,263,918 - 108,263,978EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101864 AgrOrtholog
Ensembl Genes ENSMUSG00000039952 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000079294 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000128531 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000130626 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000141385 UniProtKB/TrEMBL
  ENSMUSP00000141921 UniProtKB/TrEMBL
  ENSMUSP00000142109 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000080435 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000166905 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000171412 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000191899 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000194698 UniProtKB/TrEMBL
  ENSMUST00000195429 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.1040 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Alpha-dystroglycan_domain_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Alpha_DG1_N2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DAG1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEA_DG_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13138 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:101864 ENTREZGENE
NCBI Gene 13138 ENTREZGENE
Pfam a_DG1_N2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DAG1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dag1 PhenoGen
PROSITE SEA_DG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CADG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF111006 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49313 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YW41_MOUSE UniProtKB/TrEMBL
  A0A0A6YXB6_MOUSE UniProtKB/TrEMBL
  DAG1_MOUSE UniProtKB/Swiss-Prot
  Q544G5 ENTREZGENE, UniProtKB/TrEMBL
  Q62165 ENTREZGENE
  Q8BPJ7 ENTREZGENE, UniProtKB/TrEMBL
  Q8CBE6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q61094 UniProtKB/Swiss-Prot
  Q61141 UniProtKB/Swiss-Prot
  Q61497 UniProtKB/Swiss-Prot