Colgalt1 (collagen beta(1-O)galactosyltransferase 1) - Rat Genome Database
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Gene: Colgalt1 (collagen beta(1-O)galactosyltransferase 1) Mus musculus
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Symbol: Colgalt1
Name: collagen beta(1-O)galactosyltransferase 1
RGD ID: 1550707
MGI Page MGI
Description: Predicted to have procollagen galactosyltransferase activity. Predicted to be involved in positive regulation of collagen fibril organization. Predicted to localize to endoplasmic reticulum lumen. Is expressed in axial skeleton. Orthologous to human COLGALT1 (collagen beta(1-O)galactosyltransferase 1); PARTICIPATES IN lysine degradation pathway; O-linked glycan biosynthetic pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2-butoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2810024B22Rik; Glt25d; Glt25d1; glycosyltransferase 25 domain containing 1; glycosyltransferase 25 family member 1; hydroxylysine galactosyltransferase 1; MGC38524; procollagen galactosyltransferase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,063,631 - 72,077,555 (+)NCBIGRCm39mm39
GRCm38871,610,042 - 71,624,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,610,998 - 71,624,911 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,134,923 - 74,148,810 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,539,985 - 74,553,900 (+)NCBImm8
Celera874,125,330 - 74,139,192 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11544199   PMID:14610273   PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21327095  
PMID:21873635   PMID:22906538   PMID:24457600   PMID:29208648   PMID:30132521   PMID:31101663   PMID:31726007   PMID:31759980  


Genomics

Comparative Map Data
Colgalt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,063,631 - 72,077,555 (+)NCBIGRCm39mm39
GRCm38871,610,042 - 71,624,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,610,998 - 71,624,911 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,134,923 - 74,148,810 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,539,985 - 74,553,900 (+)NCBImm8
Celera874,125,330 - 74,139,192 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
COLGALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,555,649 - 17,583,162 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,555,649 - 17,583,159 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,666,511 - 17,693,968 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,527,511 - 17,554,965 (+)NCBINCBI36hg18NCBI36
Build 341917,527,510 - 17,554,965NCBI
Celera1917,568,107 - 17,595,621 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,231,483 - 17,258,727 (+)NCBIHuRef
CHM1_11917,665,745 - 17,693,308 (+)NCBICHM1_1
Colgalt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,039,969 - 20,052,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,039,969 - 20,052,276 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,900,825 - 19,913,463 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,810,962 - 18,823,237 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,810,896 - 18,822,079 (+)NCBI
Celera1618,523,483 - 18,535,763 (+)NCBICelera
Cytogenetic Map16p14NCBI
Colgalt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524774,737 - 783,310 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524773,997 - 782,911 (-)NCBIChiLan1.0ChiLan1.0
COLGALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11918,013,774 - 18,045,078 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,013,831 - 18,043,364 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,042,743 - 17,070,333 (+)NCBIMhudiblu_PPA_v0panPan3
COLGALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2045,251,842 - 45,272,875 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12045,250,948 - 45,272,887 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Colgalt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,377,805 - 3,395,124 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COLGALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,138,303 - 60,197,611 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,138,303 - 60,166,751 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,808,129 - 59,832,256 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COLGALT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl616,040,583 - 16,066,565 (+)Ensembl
ChlSab1.1616,040,532 - 16,066,298 (+)NCBI
Colgalt1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908497,898 - 510,128 (-)NCBI

Position Markers
RH126876  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,624,564 - 71,624,813UniSTSGRCm38
MGSCv37874,148,463 - 74,148,712UniSTSGRCm37
Celera874,138,845 - 74,139,094UniSTS
Cytogenetic Map8B3.3UniSTS
UniSTS:235925  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,624,274 - 71,624,492UniSTSGRCm38
MGSCv37874,148,173 - 74,148,391UniSTSGRCm37
Celera874,138,555 - 74,138,773UniSTS
Cytogenetic Map8B3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:423
Count of miRNA genes:295
Interacting mature miRNAs:348
Transcripts:ENSMUST00000047903
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001364443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE692044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM944342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000047903   ⟹   ENSMUSP00000047923
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,610,998 - 71,624,911 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212216
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,611,171 - 71,623,523 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212706
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,620,683 - 71,624,906 (+)Ensembl
RefSeq Acc Id: NM_001364443   ⟹   NP_001351372
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,063,812 - 72,076,167 (+)NCBI
GRCm38871,611,168 - 71,623,523 (+)NCBI
Sequence:
RefSeq Acc Id: NM_146211   ⟹   NP_666323
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,063,668 - 72,077,555 (+)NCBI
GRCm38871,611,024 - 71,624,911 (+)NCBI
MGSCv37874,134,923 - 74,148,810 (+)RGD
Celera874,125,330 - 74,139,192 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004934817
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,063,631 - 72,077,555 (+)NCBI
RefSeq Acc Id: XR_004934818
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39872,063,631 - 72,077,555 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_666323   ⟸   NM_146211
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8K297 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001351372   ⟸   NM_001364443
- Peptide Label: isoform 2 precursor
RefSeq Acc Id: ENSMUSP00000047923   ⟸   ENSMUST00000047903

Promoters
RGD ID:8667421
Promoter ID:EPDNEW_M11742
Type:initiation region
Name:Colgalt1_1
Description:Mus musculus collagen beta(1-O)galactosyltransferase 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,611,170 - 71,611,230EPDNEW
RGD ID:6843190
Promoter ID:MM_KWN:54807
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC009MEE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36874,134,726 - 74,135,226 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924348 AgrOrtholog
Ensembl Genes ENSMUSG00000034807 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000047923 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000047903 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000212216 ENTREZGENE
Gene3D-CATH 3.90.550.10 UniProtKB/Swiss-Prot
InterPro Glyco_trans_25 UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
KEGG Report mmu:234407 UniProtKB/Swiss-Prot
MGD MGI:1924348 ENTREZGENE
NCBI Gene 234407 ENTREZGENE
Pfam Glyco_transf_25 UniProtKB/Swiss-Prot
PhenoGen Colgalt1 PhenoGen
PROSITE ER_TARGET UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniGene Mm.240885 ENTREZGENE
  Mm.273836 ENTREZGENE
  Mm.334606 ENTREZGENE
UniProt GT251_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3V3R5 UniProtKB/Swiss-Prot
  Q6PGL1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-01-20 Colgalt1  collagen beta(1-O)galactosyltransferase 1  Glt25d1  glycosyltransferase 25 domain containing 1  Symbol and/or name change 5135510 APPROVED