Colgalt1 (collagen beta(1-O)galactosyltransferase 1)

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Gene: Colgalt1 (collagen beta(1-O)galactosyltransferase 1) Mus musculus

Analyze

Symbol:

Colgalt1

Name:

collagen beta(1-O)galactosyltransferase 1

RGD ID:

1550707

MGI Page

MGI

Description:

Predicted to have procollagen galactosyltransferase activity. Predicted to be involved in positive regulation of collagen fibril organization. Predicted to localize to endoplasmic reticulum lumen. Is expressed in axial skeleton. Orthologous to human COLGALT1 (collagen beta(1-O)galactosyltransferase 1); PARTICIPATES IN lysine degradation pathway; O-linked glycan biosynthetic pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2-butoxyethanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

2810024B22Rik; Glt25d; Glt25d1; glycosyltransferase 25 domain containing 1; glycosyltransferase 25 family member 1; hydroxylysine galactosyltransferase 1; MGC38524; procollagen galactosyltransferase 1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	72,063,631 - 72,077,555 (+)	NCBI	GRCm39		mm39
GRCm38	8	71,610,042 - 71,624,911 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,610,998 - 71,624,911 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	74,134,923 - 74,148,810 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	74,539,985 - 74,553,900 (+)	NCBI			mm8
Celera	8	74,125,330 - 74,139,192 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain Small Vessel Disease 3 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-butoxyethanol (EXP)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (ISO)

butanal (ISO)

carbon nanotube (EXP)

clofibrate (EXP)

copper atom (EXP)

copper(0) (EXP)

decabromodiphenyl ether (ISO)

diuron (ISO)

folic acid (EXP)

furan (ISO)

lead diacetate (EXP)

methapyrilene (ISO)

paracetamol (EXP,ISO)

Soman (ISO)

sunitinib (ISO)

tunicamycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of collagen fibril organization (ISO)

protein phosphopantetheinylation (IBA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum lumen (ISO)

Molecular Function

procollagen galactosyltransferase activity (IBA,ISO)

transferase activity (IEA)

transferase activity, transferring glycosyl groups (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

lysine degradation pathway (IEA)

O-linked glycan biosynthetic pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal carpal bone morphology (IAGP)

abnormal eye morphology (IAGP)

abnormal skeleton morphology (IAGP)

cleft palate (IAGP)

embryonic lethality, complete penetrance (IAGP)

exencephaly (IAGP)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGD data from the GO Consortium
3.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Pipeline to import KEGG annotations from KEGG into RGD
5.	RGD automated import pipeline for gene-chemical interactions
6.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11544199	PMID:14610273	PMID:14681479	PMID:15782199	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21327095
PMID:21873635	PMID:22906538	PMID:24457600	PMID:29208648	PMID:30132521	PMID:31101663	PMID:31726007	PMID:31759980

Genomics

Comparative Map Data

Colgalt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	72,063,631 - 72,077,555 (+)	NCBI	GRCm39		mm39
GRCm38	8	71,610,042 - 71,624,911 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,610,998 - 71,624,911 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	74,134,923 - 74,148,810 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	74,539,985 - 74,553,900 (+)	NCBI			mm8
Celera	8	74,125,330 - 74,139,192 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

COLGALT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	17,555,649 - 17,583,162 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	17,555,649 - 17,583,159 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	17,666,511 - 17,693,968 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,527,511 - 17,554,965 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	19	17,527,510 - 17,554,965	NCBI
Celera	19	17,568,107 - 17,595,621 (+)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	17,231,483 - 17,258,727 (+)	NCBI		HuRef
CHM1_1	19	17,665,745 - 17,693,308 (+)	NCBI		CHM1_1

Colgalt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	20,039,969 - 20,052,277 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,039,969 - 20,052,276 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,900,825 - 19,913,463 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,810,962 - 18,823,237 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	16	18,810,896 - 18,822,079 (+)	NCBI
Celera	16	18,523,483 - 18,535,763 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Colgalt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	774,737 - 783,310 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	773,997 - 782,911 (-)	NCBI	ChiLan1.0	ChiLan1.0

COLGALT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	18,013,774 - 18,045,078 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	18,013,831 - 18,043,364 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	17,042,743 - 17,070,333 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

COLGALT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	45,251,842 - 45,272,875 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	45,250,948 - 45,272,887 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Colgalt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936596	3,377,805 - 3,395,124 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COLGALT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,138,303 - 60,197,611 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,138,303 - 60,166,751 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	59,808,129 - 59,832,256 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COLGALT1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1 Ensembl	6	16,040,583 - 16,066,565 (+)	Ensembl
ChlSab1.1	6	16,040,532 - 16,066,298 (+)	NCBI

Colgalt1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	497,898 - 510,128 (-)	NCBI

Position Markers

RH126876

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,624,564 - 71,624,813	UniSTS	GRCm38
MGSCv37	8	74,148,463 - 74,148,712	UniSTS	GRCm37
Celera	8	74,138,845 - 74,139,094	UniSTS
Cytogenetic Map	8	B3.3	UniSTS

UniSTS:235925

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,624,274 - 71,624,492	UniSTS	GRCm38
MGSCv37	8	74,148,173 - 74,148,391	UniSTS	GRCm37
Celera	8	74,138,555 - 74,138,773	UniSTS
Cytogenetic Map	8	B3.3	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	423
Count of miRNA genes:	295
Interacting mature miRNAs:	348
Transcripts:	ENSMUST00000047903
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001364443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_146211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004934817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004934818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC162033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK027940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK029433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK035788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK036165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK076103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK135643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK154775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK179116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK183495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK188359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK192747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK193650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK195426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK198024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK198517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK199199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK200157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK201749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK203279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK205249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK209762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK212455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK212699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK220006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC018287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC027801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC032165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC032185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC034208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC056951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE692044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BM944342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000047903 ⟹ ENSMUSP00000047923

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,610,998 - 71,624,911 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000212216

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,611,171 - 71,623,523 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000212706

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,620,683 - 71,624,906 (+)	Ensembl

RefSeq Acc Id:

NM_001364443 ⟹ NP_001351372

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	72,063,812 - 72,076,167 (+)	NCBI
GRCm38	8	71,611,168 - 71,623,523 (+)	NCBI

Sequence:

show sequence

AGAAAAGCTGCTTAAAGGCGACGCGTGGCGCGATGGCGGCGTTGCCACGCGGGTCACGCGGGCT
GCCGCTGCTGCCACTGCTCCTACTGCTGCCGCCGCTGGGCGGCCCGCGCGGCGCGGACGGCTAC
TTTCCAGAGGAGCGCTGGAGCCCCGAGTCCCCGCTACAGGCGCCGCGCGTGCTCATCGCGCTGC
TGGCGCGGAACGCGGCACCCGCGCTGCCCGCCACGCTGGGCGCCCTGGAGCAGCTGCGCCACCC
ACGGGAGCGCACGGCGCTGTGGGTGGCCACAGATCACAACACTGACAACACTTCAGCCATACTT
CGAGAGTGGCTGGTGGCAGTGAAGGGTTTATACCACTCTGTGGAGTGGCGACCGGCAGAGGAAC
CCAGCTCTTACCCAGACGAAGAAGGCCCCAAACACTGGTCCGATTCCCGCTACGAGCATGTCAT
GAAACTGCGCCAAGCAGCCTTGAAGTCAGCTAGGGACATGTGGGCTGACTACATTCTGTTCATG
GACATCGACAACTTGATCACCAACCCCGACACTCTGAGCCTGCTCATCGCTGAGAACAAGACAG
TGGTGGCCCCCATGCTGGACTCCCGAGCGGCATACTCCAACTTCTGGTGTGGGATGACTTCGCA
GGGCTACTACAAGCGCACCCCTGCCTATATCCCCATCCGAAAACGAGACCGCAGGGGCTGCTTT
GCAGTTCCCATGGTGCACTCTACCTTCCTCATTGACCTGCGTAAGGCTGCATCCAGGAACCTGG
CCTTTTACCCAACACACCCAGACTACACCTGGTCTTTTGATGACATCATCGTCTTTGCCTTCTC
CTGTAAACAGGCAGAGGTGCAAATGTACGTGTGCAATAAGGAGGTGTACGGCTTCCTGCCCGTG
CCACTGCGTGCGCACAGCAGCCTGCAGGACGAAGCAGAGAGCTTCATGCACGTGCAGCTGGAGG
TCATGGTGAAACATCCACCAGTGCAGCTCTCCCGATTCATCTCAGCACCCAGGAAGACTTCTGA
CAAGATGGGCTTCGATGAGGTCTTCATGATCAACCTGAAGCGGAGGCGGGACCGGCGAGAACGC
ATGCTGCGGGCACTACATGAGCAGGAGATTGACTGCCAGCTGGTGGAGGCTGTAGATGGCAAAG
CCATGAACACCAGCCAGGTGGAAGCCATGGGCATCCAGATGCTGCCTGGCTACCGGGACCCCTA
CCATGGGCGGCCACTCACCAAGGGAGAGCTGGGCTGCTTTCTCAGCCACTACAACATCTGGAAG
GAGGTGGTTGACCGGGGACTACAGAAATCACTAGTGTTTGAGGATGATCTGCGTTTTGAGATCT
TCTTCAAGAGACGTCTGATGAACCTCATGCGGGATGTGGAGCGTGAGGGGCTGGACTGGGACCT
CATCATTCTCTGGCAGGTGGGGGACATGTAACAAGTCTCTTATTCTGCACCCCAGCTACGTGGG
CCGGAAGCGCATGCAGGTGGAGCACCCTGAAAAGGCTGTGCCCCATGTAAGGAACCTGGTAGAG
GCTGATTACTCCTACTGGACGCTAGCCTATGTAATCTCCCTGCAAGGTGCTCAGAAGTTGCTTG
CTGCCAAGCCACTGGCCAAAATGCTACCTGTTGATGAGTTTCTGCCTGTCATGTTTGACAAGCA
CCCAATGTAAGAAGGCTATGAAGGGGTGGGTATTTGAGGGGGTTTGGGTGGCAGGCTCGGGTCT
TTGAGTCTTGGAAGATCAGGGCAGGGGAGTGTTGGGCTCTGGCTAGGCATGGTGGGGTGAATCC
TAGTGGACTCAAAGGAAAGTCTTTTTCTGGATCATTGGTCTCCATCTCCCCTATGTCTCTGCTA
TCTCCCATAGGTCAGAATACAAGAGTCACTTCTCTCCCCGC

hide sequence

RefSeq Acc Id:

NM_146211 ⟹ NP_666323

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	72,063,668 - 72,077,555 (+)	NCBI
GRCm38	8	71,611,024 - 71,624,911 (+)	NCBI
MGSCv37	8	74,134,923 - 74,148,810 (+)	RGD
Celera	8	74,125,330 - 74,139,192 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

AAAGGCGTAGCCTTGTCATGCCTCTCTCCAGGACTCACAGTATGACCCGCGGGCCACTTCCCTT
TAAGGAGCGTGTCAGGGGTGGGACCTGGATGTGTCCTTCCCGCCGCCGACTCCTTTAAGGCGCG
GCCCTCGTCCCCCGGCAGAAAAGCTGCTTAAAGGCGACGCGTGGCGCGATGGCGGCGTTGCCAC
GCGGGTCACGCGGGCTGCCGCTGCTGCCACTGCTCCTACTGCTGCCGCCGCTGGGCGGCCCGCG
CGGCGCGGACGGCTACTTTCCAGAGGAGCGCTGGAGCCCCGAGTCCCCGCTACAGGCGCCGCGC
GTGCTCATCGCGCTGCTGGCGCGGAACGCGGCACCCGCGCTGCCCGCCACGCTGGGCGCCCTGG
AGCAGCTGCGCCACCCACGGGAGCGCACGGCGCTGTGGGTGGCCACAGATCACAACACTGACAA
CACTTCAGCCATACTTCGAGAGTGGCTGGTGGCAGTGAAGGGTTTATACCACTCTGTGGAGTGG
CGACCGGCAGAGGAACCCAGCTCTTACCCAGACGAAGAAGGCCCCAAACACTGGTCCGATTCCC
GCTACGAGCATGTCATGAAACTGCGCCAAGCAGCCTTGAAGTCAGCTAGGGACATGTGGGCTGA
CTACATTCTGTTCATGGACATCGACAACTTGATCACCAACCCCGACACTCTGAGCCTGCTCATC
GCTGAGAACAAGACAGTGGTGGCCCCCATGCTGGACTCCCGAGCGGCATACTCCAACTTCTGGT
GTGGGATGACTTCGCAGGGCTACTACAAGCGCACCCCTGCCTATATCCCCATCCGAAAACGAGA
CCGCAGGGGCTGCTTTGCAGTTCCCATGGTGCACTCTACCTTCCTCATTGACCTGCGTAAGGCT
GCATCCAGGAACCTGGCCTTTTACCCAACACACCCAGACTACACCTGGTCTTTTGATGACATCA
TCGTCTTTGCCTTCTCCTGTAAACAGGCAGAGGTGCAAATGTACGTGTGCAATAAGGAGGTGTA
CGGCTTCCTGCCCGTGCCACTGCGTGCGCACAGCAGCCTGCAGGACGAAGCAGAGAGCTTCATG
CACGTGCAGCTGGAGGTCATGGTGAAACATCCACCAGTGCAGCTCTCCCGATTCATCTCAGCAC
CCAGGAAGACTTCTGACAAGATGGGCTTCGATGAGGTCTTCATGATCAACCTGAAGCGGAGGCG
GGACCGGCGAGAACGCATGCTGCGGGCACTACATGAGCAGGAGATTGACTGCCAGCTGGTGGAG
GCTGTAGATGGCAAAGCCATGAACACCAGCCAGGTGGAAGCCATGGGCATCCAGATGCTGCCTG
GCTACCGGGACCCCTACCATGGGCGGCCACTCACCAAGGGAGAGCTGGGCTGCTTTCTCAGCCA
CTACAACATCTGGAAGGAGGTGGTTGACCGGGGACTACAGAAATCACTAGTGTTTGAGGATGAT
CTGCGTTTTGAGATCTTCTTCAAGAGACGTCTGATGAACCTCATGCGGGATGTGGAGCGTGAGG
GGCTGGACTGGGACCTCATCTACGTGGGCCGGAAGCGCATGCAGGTGGAGCACCCTGAAAAGGC
TGTGCCCCATGTAAGGAACCTGGTAGAGGCTGATTACTCCTACTGGACGCTAGCCTATGTAATC
TCCCTGCAAGGTGCTCAGAAGTTGCTTGCTGCCAAGCCACTGGCCAAAATGCTACCTGTTGATG
AGTTTCTGCCTGTCATGTTTGACAAGCACCCAATGTCAGAATACAAGAGTCACTTCTCTCCCCG
CAACCTGCGTGCCTTCTCTGTGGAGCCCCTCCTTATCTACCCTACACACTACACAGGGGATGAT
GGCTATGTGAGTGACACAGAGACCTCAGTTGTGTGGAATAATGAGCAGGTTAAGACTGACTGGG
ACCGAGCCAAGTCCCAGAAGATGCGGGAACAGCAAGCACTGAGCCGTGAGGCCAAGAACTCAGA
TGTGCTCCAGTCTCCACTGGACAGCACTGCCCGTGATGAGCTTTGAGGCAACTGGCAAACAGCC
AAAGCCACTGCTACACACCTAAACTTCATGTGCTTGCCTGGGACTATAGGGCCACTCAGGCAGA
CAACAGAGAGCTCTACAAGCACAGAGGTCTCCATGTCTTCCTGTTTAGCAGCCACTTACACACA
GGCAGCATTTATGGAGTACTTACTGTATGCCAGAAATAGGGCTGACCACCAAGAGATTGGTCAG
GAACAAGCACAGTCAGTTGGGTCCACCATGAAGGAAGTTCTCTTGTTAGAGCAATGAAAGAGGC
ATGATTCCCCCTTATCAGTGATGAACTGATCATCAGTCTTTTATTGTTCAGACTGAGTCAGGTA
TTAGGGATACATACTCATTTTTAAAATCCGTTTGAGTATTTATTGAGGGCTTACTGTATATTAG
GTACCATTCTTAGCTCTGGGAATACTGAAATAAGAAAAAAAAATCAAGCAAAATATACCAAGCA
GCTGCTATGTGCCAGGTCTTAGGAAGCACTGATGAGTTAAGTGTCTACTATGTGTCACTCAGTA
GGTGCTGGAGATGGATGTCCCAGTGGTGCTTATCCTTGTAGTGGGCATGATATGCTTACGGTGG
AAACAGTCTTATTGACCCTGTGTGCTAGGCTACACGCTGAGCACAATGACAGAGTCTAAACAGA
ATGTAACAAGCATTTATTGAGCACCTAGAGTATCAGGCCTTTGACTCCCAGTTGGTTGAGAAAT
AGCCACCCTCCAACCTGTCTGCCGGAGGACACTGGGCTTCCCTTGTCTAGAAGGGAGCATTGCT
CTCCTTCCCTTGGTTGACTGCTAGGTTCAAGGATACTCATGACCTTGCAAGTCCCCCACCCCCC
GTGTCCCTGGGCTGGGGCTCCCTTGCCCACCCCTTACTTCCAGAGCTTCTCTCTGCCCTTGTAT
CTCAGGTGTCCCTTGGCTGCTCATATGTTTGGGGCCTTGAGGTGCCCACCTGTATTGGGGTGCT
CCTCTTGGCCTGAGCAGTGTGTTTACCAGCAGGCCAGGGTGTTGCTGTCCCTTCAAAACCAAAT
TGACTGTCAACTGGACAGTGGGTACCATCTTCTTGGGATGACTGCTTGCCTGCTCAGGTCTTGG
TAACTTGCTCATGTTTGTATTAAATTCTTATTGGTTTTCACTGAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XR_004934817

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	72,063,631 - 72,077,555 (+)	NCBI

RefSeq Acc Id:

XR_004934818

RefSeq Status:

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	72,063,631 - 72,077,555 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001351372	(Get FASTA)	NCBI Sequence Viewer
	NP_666323	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH32165	(Get FASTA)	NCBI Sequence Viewer
	AAH56951	(Get FASTA)	NCBI Sequence Viewer
	BAE43293	(Get FASTA)	NCBI Sequence Viewer
	EDL28949	(Get FASTA)	NCBI Sequence Viewer
	EDL28950	(Get FASTA)	NCBI Sequence Viewer
	Q8K297	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_666323 ⟸ NM_146211
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q8K297 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAALPRGSRGLPLLPLLLLLPPLGGPRGADGYFPEERWSPESPLQAPRVLIALLARNAAPALPA TLGALEQLRHPRERTALWVATDHNTDNTSAILREWLVAVKGLYHSVEWRPAEEPSSYPDEEGPK HWSDSRYEHVMKLRQAALKSARDMWADYILFMDIDNLITNPDTLSLLIAENKTVVAPMLDSRAA YSNFWCGMTSQGYYKRTPAYIPIRKRDRRGCFAVPMVHSTFLIDLRKAASRNLAFYPTHPDYTW SFDDIIVFAFSCKQAEVQMYVCNKEVYGFLPVPLRAHSSLQDEAESFMHVQLEVMVKHPPVQLS RFISAPRKTSDKMGFDEVFMINLKRRRDRRERMLRALHEQEIDCQLVEAVDGKAMNTSQVEAMG IQMLPGYRDPYHGRPLTKGELGCFLSHYNIWKEVVDRGLQKSLVFEDDLRFEIFFKRRLMNLMR DVEREGLDWDLIYVGRKRMQVEHPEKAVPHVRNLVEADYSYWTLAYVISLQGAQKLLAAKPLAK MLPVDEFLPVMFDKHPMSEYKSHFSPRNLRAFSVEPLLIYPTHYTGDDGYVSDTETSVVWNNEQ VKTDWDRAKSQKMREQQALSREAKNSDVLQSPLDSTARDEL hide sequence

RefSeq Acc Id:	NP_001351372 ⟸ NM_001364443
- Peptide Label:	isoform 2 precursor

RefSeq Acc Id:

ENSMUSP00000047923 ⟸ ENSMUST00000047903

Promoters

RGD ID:

8667421

Promoter ID:

EPDNEW_M11742

Type:

initiation region

Name:

Colgalt1_1

Description:

Mus musculus collagen beta(1-O)galactosyltransferase 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	71,611,170 - 71,611,230	EPDNEW

RGD ID:

6843190

Promoter ID:

MM_KWN:54807

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

UC009MEE.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	74,134,726 - 74,135,226 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1924348	AgrOrtholog
Ensembl Genes	ENSMUSG00000034807	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000047923	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000047903	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000212216	ENTREZGENE
Gene3D-CATH	3.90.550.10	UniProtKB/Swiss-Prot
InterPro	Glyco_trans_25	UniProtKB/Swiss-Prot
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot
KEGG Report	mmu:234407	UniProtKB/Swiss-Prot
MGD	MGI:1924348	ENTREZGENE
NCBI Gene	234407	ENTREZGENE
Pfam	Glyco_transf_25	UniProtKB/Swiss-Prot
PhenoGen	Colgalt1	PhenoGen
PROSITE	ER_TARGET	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot
UniGene	Mm.240885	ENTREZGENE
	Mm.273836	ENTREZGENE
	Mm.334606	ENTREZGENE
UniProt	GT251_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q3V3R5	UniProtKB/Swiss-Prot
	Q6PGL1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-01-20	Colgalt1	collagen beta(1-O)galactosyltransferase 1	Glt25d1	glycosyltransferase 25 domain containing 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)