Elf3 (E74-like factor 3) - Rat Genome Database

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Gene: Elf3 (E74-like factor 3) Mus musculus
Analyze
Symbol: Elf3
Name: E74-like factor 3
RGD ID: 1321735
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in mammary gland involution and positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including blastocyst development; extracellular matrix organization; and regulation of DNA-templated transcription. Predicted to be located in Golgi apparatus; cytosol; and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; eye; and genitourinary system. Orthologous to human ELF3 (E74 like ETS transcription factor 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: epithelial-restricted with serine box; epithelium-restricted Ets protein ESX; epithelium-specific Ets transcription factor 1; ES; ESE-; ESE-1; ESX; ETS-related transcription factor Elf-3; je; jen
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,181,312 - 135,186,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,181,313 - 135,186,306 (-)EnsemblGRCm39 Ensembl
GRCm381135,253,574 - 135,258,472 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,253,575 - 135,258,568 (-)EnsemblGRCm38mm10GRCm38
MGSCv371137,150,151 - 137,155,049 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,069,990 - 137,074,849 (-)NCBIMGSCv36mm8
Celera1137,878,901 - 137,883,796 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
4-hydroxyphenyl retinamide  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
afimoxifene  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (ISO)
antimonite  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzalkonium chloride  (EXP)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cefaloridine  (ISO)
choline  (EXP)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (ISO)
diethylstilbestrol  (EXP,ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dorsomorphin  (ISO)
doxifluridine  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glycine betaine  (ISO)
hydroquinone  (ISO)
inulin  (EXP)
L-methionine  (EXP)
lead diacetate  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
medroxyprogesterone acetate  (ISO)
mercury dibromide  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Monobutylphthalate  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (EXP)
potassium dichromate  (EXP)
progesterone  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
tremolite asbestos  (EXP)
tributylstannane  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IC)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9395241   PMID:9806763   PMID:10349636   PMID:10922068   PMID:11025204   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11893733   PMID:11984530   PMID:12032832   PMID:12477932  
PMID:12775764   PMID:14635793   PMID:15556300   PMID:15645444   PMID:16141072   PMID:16141073   PMID:16230531   PMID:16325481   PMID:16516205   PMID:16602821   PMID:16630543   PMID:17408644  
PMID:17907201   PMID:18287559   PMID:18554416   PMID:19801644   PMID:20054123   PMID:20059953   PMID:20079749   PMID:20412781   PMID:20689519   PMID:20932939   PMID:21267068   PMID:21677750  
PMID:21709667   PMID:21803035   PMID:21873635   PMID:21905163   PMID:21948981   PMID:22158614   PMID:22917924   PMID:22988430   PMID:23266329   PMID:24194600   PMID:26097038   PMID:27222093  
PMID:27626380   PMID:29691435   PMID:31150422   PMID:31780666   PMID:34160894   PMID:35696273   PMID:36988891   PMID:37345534   PMID:37946371   PMID:38355793   PMID:38975675  


Genomics

Comparative Map Data
Elf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,181,312 - 135,186,210 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,181,313 - 135,186,306 (-)EnsemblGRCm39 Ensembl
GRCm381135,253,574 - 135,258,472 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,253,575 - 135,258,568 (-)EnsemblGRCm38mm10GRCm38
MGSCv371137,150,151 - 137,155,049 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,069,990 - 137,074,849 (-)NCBIMGSCv36mm8
Celera1137,878,901 - 137,883,796 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.42NCBI
ELF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,010,587 - 202,017,183 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1202,007,945 - 202,017,183 (+)EnsemblGRCh38hg38GRCh38
GRCh371201,979,715 - 201,986,311 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,243,696 - 200,251,754 (+)NCBINCBI36Build 36hg18NCBI36
Build 341198,708,729 - 198,716,790NCBI
Celera1175,103,445 - 175,110,070 (+)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1173,145,578 - 173,152,204 (+)NCBIHuRef
CHM1_11203,401,929 - 203,408,555 (+)NCBICHM1_1
T2T-CHM13v2.01201,268,232 - 201,274,828 (+)NCBIT2T-CHM13v2.0
Elf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,242,265 - 49,247,102 (-)NCBIGRCr8
mRatBN7.21346,690,460 - 46,695,394 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,690,466 - 46,695,481 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,297,526 - 49,302,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01350,585,600 - 50,590,401 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,851,624 - 47,856,427 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,083,873 - 52,088,798 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,083,859 - 52,088,780 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,135,479 - 57,140,395 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,258,893 - 48,263,713 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,272,937 - 48,277,756 (-)NCBI
Celera1347,013,176 - 47,017,996 (-)NCBICelera
Cytogenetic Map13q13NCBI
Elf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,126,349 - 38,132,123 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540638,126,633 - 38,131,292 (+)NCBIChiLan1.0ChiLan1.0
ELF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,367,065 - 47,372,478 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,331,763 - 47,337,183 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,607,265 - 177,613,234 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,908,704 - 181,915,359 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,908,747 - 181,915,354 (+)Ensemblpanpan1.1panPan2
ELF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17959,408 - 965,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7859,585 - 963,788 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,011,070 - 1,016,981 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07967,232 - 973,143 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7867,652 - 971,634 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17955,282 - 961,193 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,063,480 - 1,069,391 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,087,488 - 1,093,399 (-)NCBIUU_Cfam_GSD_1.0
Elf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,259,969 - 73,266,124 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,494,505 - 2,499,601 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,494,645 - 2,500,361 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,237,875 - 24,243,058 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11024,237,852 - 24,242,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,662,079 - 28,665,494 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,390,707 - 27,398,312 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2527,390,809 - 27,397,441 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605528,173,346 - 28,180,686 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248078,719,835 - 8,725,911 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Elf3
224 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:355
Count of miRNA genes:257
Interacting mature miRNAs:295
Transcripts:ENSMUST00000003135
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
13524520Bodwtq1_mbody wweight QTL 1 (mouse)1131191160135621161Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
13504831Bacszq1_mbaculum size QTL 1 (mouse)1134331161148128608Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
13513913Heal51_mwound healing/ regeneration 51 (mouse)1131780648135499606Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse

Markers in Region
Elf3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1FUniSTS
cM Map158.42UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000003135   ⟹   ENSMUSP00000003135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,181,313 - 135,186,306 (-)Ensembl
GRCm38.p6 Ensembl1135,253,575 - 135,258,568 (-)Ensembl
Ensembl Acc Id: ENSMUST00000185752   ⟹   ENSMUSP00000139769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,181,317 - 135,186,176 (-)Ensembl
GRCm38.p6 Ensembl1135,253,579 - 135,258,438 (-)Ensembl
Ensembl Acc Id: ENSMUST00000188895
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,184,395 - 135,185,387 (-)Ensembl
GRCm38.p6 Ensembl1135,256,657 - 135,257,649 (-)Ensembl
RefSeq Acc Id: NM_001163131   ⟹   NP_001156603
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,181,312 - 135,186,210 (-)NCBI
GRCm381135,253,574 - 135,258,472 (-)NCBI
MGSCv371137,150,151 - 137,155,049 (-)RGD
Celera1137,878,901 - 137,883,796 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007921   ⟹   NP_031947
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,181,312 - 135,186,210 (-)NCBI
GRCm381135,253,574 - 135,258,472 (-)NCBI
MGSCv371137,150,151 - 137,155,049 (-)RGD
Celera1137,878,901 - 137,883,796 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031947   ⟸   NM_007921
- Peptide Label: isoform 2
- UniProtKB: Q3UPW2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156603   ⟸   NM_001163131
- Peptide Label: isoform 1
- UniProtKB: Q3UPW2 (UniProtKB/Swiss-Prot),   B9EI01 (UniProtKB/Swiss-Prot),   B7ZNQ9 (UniProtKB/Swiss-Prot),   O35275 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000139769   ⟸   ENSMUST00000185752
Ensembl Acc Id: ENSMUSP00000003135   ⟸   ENSMUST00000003135
Protein Domains
PNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UPW2-F1-model_v2 AlphaFold Q3UPW2 1-391 view protein structure

Promoters
RGD ID:6875052
Promoter ID:EPDNEW_M977
Type:multiple initiation site
Name:Elf3_1
Description:Mus musculus E74-like factor 3 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,258,457 - 135,258,517EPDNEW
RGD ID:6817639
Promoter ID:MM_KWN:2190
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung
Transcripts:NM_001163131,   NM_007921
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361137,154,781 - 137,155,281 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1101781 AgrOrtholog
Ensembl Genes ENSMUSG00000003051 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000003135 ENTREZGENE
  ENSMUST00000003135.14 UniProtKB/Swiss-Prot
  ENSMUST00000185752 ENTREZGENE
  ENSMUST00000185752.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
  1.10.150.50 UniProtKB/Swiss-Prot
InterPro Elf-3_PNT UniProtKB/Swiss-Prot
  Ets_dom UniProtKB/Swiss-Prot
  ETS_fam UniProtKB/Swiss-Prot
  Pointed_dom UniProtKB/Swiss-Prot
  SAM/pointed_sf UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report mmu:13710 UniProtKB/Swiss-Prot
MGD MGI:1101781 ENTREZGENE
NCBI Gene 13710 ENTREZGENE
PANTHER PTHR11849 UniProtKB/Swiss-Prot
  PTHR11849:SF13 UniProtKB/Swiss-Prot
Pfam Ets UniProtKB/Swiss-Prot
  SAM_PNT UniProtKB/Swiss-Prot
PhenoGen Elf3 PhenoGen
PRINTS ETSDOMAIN UniProtKB/Swiss-Prot
PROSITE ETS_DOMAIN_3 UniProtKB/Swiss-Prot
  PNT UniProtKB/Swiss-Prot
SMART ETS UniProtKB/Swiss-Prot
  SAM_PNT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
  SSF47769 UniProtKB/Swiss-Prot
UniProt B7ZNQ9 ENTREZGENE
  B9EI01 ENTREZGENE
  ELF3_MOUSE UniProtKB/Swiss-Prot
  O35275 ENTREZGENE
  Q3UPW2 ENTREZGENE
  Q9R1Y9_MOUSE UniProtKB/TrEMBL
UniProt Secondary B7ZNQ9 UniProtKB/Swiss-Prot
  B9EI01 UniProtKB/Swiss-Prot
  O35275 UniProtKB/Swiss-Prot