Megf9 (multiple EGF-like-domains 9) - Rat Genome Database

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Gene: Megf9 (multiple EGF-like-domains 9) Mus musculus
Analyze
Symbol: Megf9
Name: multiple EGF-like-domains 9
RGD ID: 1318038
MGI Page MGI
Description: Predicted to be involved in several processes, including axon guidance; basement membrane assembly; and substrate adhesion-dependent cell spreading. Located in basement membrane. Is expressed in several structures, including eye; gut epithelium; nervous system; olfactory epithelium; and skin. Orthologous to human MEGF9 (multiple EGF like domains 9).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4933405H16Rik; 9630025C07; EGF-like protein 5; EGF-like-domain, multiple 5; Egfl; Egfl5; epidermal growth factor-like protein 5; mKIAA0818; multiple EGF-like domains protein 9; multiple epidermal growth factor-like domains protein 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39470,350,164 - 70,453,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl470,345,302 - 70,453,232 (-)EnsemblGRCm39 Ensembl
GRCm38470,431,927 - 70,534,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl470,427,065 - 70,534,995 (-)EnsemblGRCm38mm10GRCm38
MGSCv37470,092,961 - 70,195,962 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36469,918,288 - 70,021,289 (-)NCBIMGSCv36mm8
Celera469,026,247 - 69,125,899 (-)NCBICelera
Cytogenetic Map4C2NCBI
cM Map435.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Identification of candidate lung cancer susceptibility genes in mouse using oligonucleotide arrays. Lemon WJ, etal., J Med Genet 2002 Sep;39(9):644-55.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15782199   PMID:16110338   PMID:16141072   PMID:16141073   PMID:16783635   PMID:16981854  
PMID:20562862   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22967998   PMID:34321999  


Genomics

Comparative Map Data
Megf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39470,350,164 - 70,453,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl470,345,302 - 70,453,232 (-)EnsemblGRCm39 Ensembl
GRCm38470,431,927 - 70,534,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl470,427,065 - 70,534,995 (-)EnsemblGRCm38mm10GRCm38
MGSCv37470,092,961 - 70,195,962 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36469,918,288 - 70,021,289 (-)NCBIMGSCv36mm8
Celera469,026,247 - 69,125,899 (-)NCBICelera
Cytogenetic Map4C2NCBI
cM Map435.92NCBI
MEGF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389120,600,811 - 120,714,470 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9120,600,811 - 120,714,470 (-)EnsemblGRCh38hg38GRCh38
GRCh379123,363,089 - 123,476,748 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369122,402,912 - 122,516,433 (-)NCBINCBI36Build 36hg18NCBI36
Build 349120,442,644 - 120,501,329NCBI
Celera994,011,363 - 94,124,882 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef992,980,942 - 93,106,705 (-)NCBIHuRef
CHM1_19123,510,375 - 123,623,915 (-)NCBICHM1_1
T2T-CHM13v2.09132,795,136 - 132,910,624 (-)NCBIT2T-CHM13v2.0
Megf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8589,008,679 - 89,120,731 (-)NCBIGRCr8
mRatBN7.2583,993,565 - 84,105,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl583,993,565 - 84,105,622 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx586,384,336 - 86,496,433 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0588,201,662 - 88,313,760 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0588,177,337 - 88,289,435 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0586,586,996 - 86,696,388 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl586,586,996 - 86,696,388 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0590,674,194 - 90,783,779 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4587,771,841 - 87,884,885 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1587,835,304 - 87,889,914 (-)NCBI
Celera582,798,300 - 82,909,288 (-)NCBICelera
Cytogenetic Map5q31NCBI
Megf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554197,303,346 - 7,395,493 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554197,303,248 - 7,399,796 (+)NCBIChiLan1.0ChiLan1.0
MEGF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,631,309 - 18,745,186 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1918,633,656 - 18,747,648 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0991,728,219 - 91,842,056 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19120,076,181 - 120,189,364 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,076,181 - 120,189,364 (-)Ensemblpanpan1.1panPan2
MEGF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11173,716,395 - 73,793,072 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1172,129,733 - 72,206,838 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01174,849,424 - 74,927,568 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11173,361,703 - 73,440,223 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01173,393,710 - 73,470,845 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01174,130,763 - 74,208,829 (-)NCBIUU_Cfam_GSD_1.0
Megf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947189,327,446 - 189,428,986 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364879,095,979 - 9,203,768 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEGF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,661,420 - 260,756,866 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,662,355 - 260,756,930 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21292,733,710 - 292,827,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MEGF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11218,866,228 - 18,976,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1218,866,185 - 18,974,909 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603524,028,779 - 24,146,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Megf9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476014,629,985 - 14,723,546 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476014,629,989 - 14,721,655 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Megf9
4041 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:2440
Count of miRNA genes:804
Interacting mature miRNAs:1097
Transcripts:ENSMUST00000037881, ENSMUST00000107359
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
4141810Ccmp4_mcerebellar cAMP 4 (mouse)Not determined46710026280769973Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse

Markers in Region
G67012  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38470,430,175 - 70,430,633UniSTSGRCm38
MGSCv37470,091,209 - 70,091,667UniSTSGRCm37
Celera469,024,497 - 69,024,955UniSTS
Cytogenetic Map4C2UniSTS
UniSTS:234943  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38470,430,074 - 70,430,196UniSTSGRCm38
MGSCv37470,091,108 - 70,091,230UniSTSGRCm37
Celera469,024,396 - 69,024,518UniSTS
Cytogenetic Map4C2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000037881   ⟹   ENSMUSP00000040801
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl470,380,063 - 70,453,232 (-)Ensembl
GRCm38.p6 Ensembl470,461,826 - 70,534,995 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107359   ⟹   ENSMUSP00000102982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl470,345,302 - 70,453,165 (-)Ensembl
GRCm38.p6 Ensembl470,427,065 - 70,534,928 (-)Ensembl
RefSeq Acc Id: NM_172694   ⟹   NP_766282
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39470,350,164 - 70,453,165 (-)NCBI
GRCm38470,431,927 - 70,534,928 (-)ENTREZGENE
MGSCv37470,092,961 - 70,195,962 (-)RGD
Celera469,026,247 - 69,125,899 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_766282   ⟸   NM_172694
- Peptide Label: precursor
- UniProtKB: Q8BWI4 (UniProtKB/Swiss-Prot),   Q8BH27 (UniProtKB/Swiss-Prot),   Q0VGR4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000102982   ⟸   ENSMUST00000107359
Ensembl Acc Id: ENSMUSP00000040801   ⟸   ENSMUST00000037881
Protein Domains
Laminin EGF-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BH27-F1-model_v2 AlphaFold Q8BH27 1-600 view protein structure

Promoters
RGD ID:6835645
Promoter ID:MM_KWN:38068
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000000816,   OTTMUST00000000817
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36470,195,901 - 70,196,997 (-)MPROMDB
RGD ID:6883692
Promoter ID:EPDNEW_M5297
Type:initiation region
Name:Megf9_1
Description:Mus musculus multiple EGF-like-domains 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38470,534,928 - 70,534,988EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918264 AgrOrtholog
Ensembl Genes ENSMUSG00000039270 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037881.3 UniProtKB/TrEMBL
  ENSMUST00000107359 ENTREZGENE
  ENSMUST00000107359.9 UniProtKB/Swiss-Prot
Gene3D-CATH Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin/Netrin_ECM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:230316 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1918264 ENTREZGENE
NCBI Gene Megf9 ENTREZGENE
PANTHER LAMININ SUBUNIT ALPHA 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Megf9 PhenoGen
PRINTS EGFLAMININ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRICHEXTENSN UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_LAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_Lam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F8WHT8_MOUSE UniProtKB/TrEMBL
  MEGF9_MOUSE UniProtKB/Swiss-Prot
  Q0VGR4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BH27 ENTREZGENE
  Q8BWI4 ENTREZGENE
UniProt Secondary Q8BWI4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Megf9  multiple EGF-like-domains 9  4933405H16Rik  RIKEN cDNA 4933405H16 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 4933405H16Rik  RIKEN cDNA 4933405H16 gene  Megf9  multiple EGF-like-domains 9  Symbol and/or name change 5135510 APPROVED