Thsd4 (thrombospondin, type I, domain containing 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Thsd4 (thrombospondin, type I, domain containing 4) Mus musculus
Analyze
Symbol: Thsd4
Name: thrombospondin, type I, domain containing 4
RGD ID: 1617400
MGI Page MGI
Description: Predicted to have metalloendopeptidase activity. Involved in elastic fiber assembly. Localizes to microfibril. Is expressed in several structures, including cricoid cartilage; diencephalon; lip; metatarsal bone; and trunk. Orthologous to human THSD4 (thrombospondin type 1 domain containing 4); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A disintegrin and metalloproteinase with thrombospondin motifs-like protein 6; ADAM; ADAMTS-like protein 4; ADAMTS-like protein 6; ADAMTSL-4; ADAMTSL-6; Adamtsl4; ADAMTSL6; AI585901; B230114P05Rik; thrombospondin type-1 domain-containing protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,874,214 - 60,429,394 (-)NCBIGRCm39mm39
GRCm39 Ensembl959,874,214 - 60,429,329 (-)Ensembl
GRCm38959,966,931 - 60,522,113 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,966,931 - 60,522,046 (-)EnsemblGRCm38mm10GRCm38
MGSCv37959,814,738 - 60,358,842 (-)NCBIGRCm37mm9NCBIm37
MGSCv36959,767,725 - 59,939,141 (-)NCBImm8
Celera957,195,098 - 57,735,471 (-)NCBICelera
Cytogenetic Map9BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17103052   PMID:17916774   PMID:18757743   PMID:18799693  
PMID:19940141   PMID:20436479   PMID:20637190   PMID:21267068   PMID:21491160   PMID:21873635   PMID:21880733   PMID:22052878  


Genomics

Comparative Map Data
Thsd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,874,214 - 60,429,394 (-)NCBIGRCm39mm39
GRCm39 Ensembl959,874,214 - 60,429,329 (-)Ensembl
GRCm38959,966,931 - 60,522,113 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,966,931 - 60,522,046 (-)EnsemblGRCm38mm10GRCm38
MGSCv37959,814,738 - 60,358,842 (-)NCBIGRCm37mm9NCBIm37
MGSCv36959,767,725 - 59,939,141 (-)NCBImm8
Celera957,195,098 - 57,735,471 (-)NCBICelera
Cytogenetic Map9BNCBI
THSD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1571,096,952 - 71,783,383 (+)EnsemblGRCh38hg38GRCh38
GRCh381571,096,894 - 71,783,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371571,433,788 - 72,075,722 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361569,220,842 - 69,862,776 (+)NCBINCBI36hg18NCBI36
Celera1548,324,642 - 48,962,070 (+)NCBI
Cytogenetic Map15q23NCBI
HuRef1548,268,554 - 48,906,012 (+)NCBIHuRef
CHM1_11571,551,994 - 72,193,852 (+)NCBICHM1_1
Thsd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2860,384,636 - 60,984,419 (-)NCBI
Rnor_6.0 Ensembl864,817,191 - 65,003,296 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0864,811,940 - 65,413,498 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0864,569,306 - 65,166,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4863,925,951 - 64,415,899 (-)NCBIRGSC3.4rn4RGSC3.4
Celera859,826,443 - 60,422,430 (-)NCBICelera
Cytogenetic Map8q24NCBI
Thsd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554505,301,765 - 5,479,638 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554505,296,670 - 5,827,252 (-)NCBIChiLan1.0ChiLan1.0
THSD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11568,859,738 - 69,497,610 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1568,859,819 - 69,491,696 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01550,067,560 - 50,732,761 (+)NCBIMhudiblu_PPA_v0panPan3
THSD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13035,156,926 - 35,358,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3035,156,981 - 35,353,767 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3035,091,914 - 35,293,801 (+)NCBI
Dog10K_Boxer_Tasha3034,726,043 - 35,042,345 (+)NCBI
ROS_Cfam_1.03034,990,940 - 35,563,193 (+)NCBI
UMICH_Zoey_3.13034,946,198 - 35,514,090 (+)NCBI
UNSW_CanFamBas_1.03035,339,869 - 35,542,129 (+)NCBI
UNSW_CanFamBas_1.03034,974,569 - 35,290,502 (+)NCBI
UU_Cfam_GSD_1.03035,230,015 - 35,796,275 (+)NCBI
Thsd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640112,781,079 - 113,364,996 (+)NCBI
SpeTri2.0NW_00493647131,002,241 - 31,213,057 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THSD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1168,751,423 - 169,323,977 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11168,751,403 - 169,328,559 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21187,773,138 - 188,056,930 (+)NCBISscrofa10.2Sscrofa10.2susScr3
THSD4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12611,677,332 - 12,207,092 (-)NCBI
ChlSab1.1 Ensembl2611,683,231 - 11,912,098 (-)Ensembl
Vero_WHO_p1.0NW_023666048129,220,676 - 129,891,992 (+)NCBI
Thsd4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247812,217,668 - 2,793,867 (-)NCBI

Position Markers
D9Mit103  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38960,494,267 - 60,494,414UniSTSGRCm38
MGSCv37960,342,074 - 60,342,221UniSTSGRCm37
Celera957,718,543 - 57,718,694UniSTS
Cytogenetic Map9BUniSTS
cM Map933.0UniSTS
Whitehead Genetic931.7UniSTS
D9Mit194  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38960,306,987 - 60,307,122UniSTSGRCm38
MGSCv37960,154,794 - 60,154,929UniSTSGRCm37
Celera957,529,045 - 57,529,180UniSTS
Cytogenetic Map9BUniSTS
cM Map934.0UniSTS
Whitehead Genetic932.8UniSTS
Whitehead_YAC9 UniSTS
RH125506  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38960,153,596 - 60,153,860UniSTSGRCm38
MGSCv37960,001,403 - 60,001,667UniSTSGRCm37
Celera957,375,820 - 57,376,084UniSTS
Cytogenetic Map9BUniSTS
AI585901  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38959,967,026 - 59,967,116UniSTSGRCm38
MGSCv37959,814,833 - 59,814,923UniSTSGRCm37
Celera957,195,193 - 57,195,283UniSTS
Cytogenetic Map9BUniSTS
Whitehead/MRC_RH9592.62UniSTS
MARC_21620-21621:1033068940:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38959,987,371 - 59,987,969UniSTSGRCm38
MGSCv37959,835,178 - 59,835,776UniSTSGRCm37
Celera957,215,541 - 57,216,139UniSTS
Cytogenetic Map9BUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208563Bmiq8_mbody mass index QTL 8 (mouse)92500000069000000Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92688512460885255Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92688512460885255Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92688512460885255Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92733989761340026Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92938163163381774Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92938163163381774Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93014186664141979Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93082861764828723Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93252326366523557Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93254112166541246Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93259987266600121Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93297840266978536Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93319972567199840Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93512317869123299Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93512317869123299Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93512317869123299Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93791224471912244Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93819229172192291Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93819229172192291Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93819229172192291Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93949260173492601Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94050829874700643Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94089776474897921Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94357343177573577Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94357343177573577Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94452089278520980Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4668637365923895Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94892377482923895Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94892377482923895Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94950899863332570Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94950899867244166Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
14746993Manh66_mmandible shape 66 (mouse)94990676683906766Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95024403884244166Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95251479868648726Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95465267888652678Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
1301287Feml2_mfemur length in high growth mice 2 (mouse)Not determined95760000063300000Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95768420965923895Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95789776471574472Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95789776486239920Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95887703568648726Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5272
Count of miRNA genes:881
Interacting mature miRNAs:1178
Transcripts:ENSMUST00000034829, ENSMUST00000098660, ENSMUST00000126347, ENSMUST00000140824, ENSMUST00000146099, ENSMUST00000171654
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001040426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV559893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ424862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ517441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034829   ⟹   ENSMUSP00000034829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl959,969,719 - 60,141,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000098660   ⟹   ENSMUSP00000096257
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl959,966,931 - 60,511,035 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126347
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl959,993,115 - 60,001,588 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140824   ⟹   ENSMUSP00000123323
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl960,428,226 - 60,522,046 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146099
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl960,509,875 - 60,511,007 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171654   ⟹   ENSMUSP00000131418
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl959,966,931 - 60,497,126 (-)Ensembl
RefSeq Acc Id: NM_001040426   ⟹   NP_001035516
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,874,214 - 60,418,318 (-)NCBI
GRCm38959,966,931 - 60,511,035 (-)NCBI
MGSCv37959,814,738 - 60,358,842 (-)RGD
Celera957,195,098 - 57,735,471 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172444   ⟹   NP_766032
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,874,214 - 60,048,503 (-)NCBI
GRCm38959,966,931 - 60,141,220 (-)NCBI
MGSCv37959,814,738 - 60,358,842 (-)RGD
Celera957,195,098 - 57,735,471 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510906   ⟹   XP_006510969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,874,214 - 60,429,394 (-)NCBI
GRCm38959,966,931 - 60,522,113 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510907   ⟹   XP_006510970
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,874,214 - 60,429,161 (-)NCBI
GRCm38959,966,931 - 60,521,870 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154759   ⟹   XP_036010652
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,874,214 - 60,418,342 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001035516   ⟸   NM_001040426
- Peptide Label: isoform a precursor
- UniProtKB: Q3UTY6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_766032   ⟸   NM_172444
- Peptide Label: isoform b precursor
- UniProtKB: Q3UTY6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510969   ⟸   XM_006510906
- Peptide Label: isoform X1
- UniProtKB: Q3UTY6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510970   ⟸   XM_006510907
- Peptide Label: isoform X1
- UniProtKB: Q3UTY6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034829   ⟸   ENSMUST00000034829
RefSeq Acc Id: ENSMUSP00000131418   ⟸   ENSMUST00000171654
RefSeq Acc Id: ENSMUSP00000123323   ⟸   ENSMUST00000140824
RefSeq Acc Id: ENSMUSP00000096257   ⟸   ENSMUST00000098660
RefSeq Acc Id: XP_036010652   ⟸   XM_036154759
- Peptide Label: isoform X1
Protein Domains
PLAC   TSP type-1

Promoters
RGD ID:8669862
Promoter ID:EPDNEW_M12961
Type:single initiation site
Name:Thsd4_1
Description:Mus musculus thrombospondin, type I, domain containing 4 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12962  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38960,141,231 - 60,141,291EPDNEW
RGD ID:8669864
Promoter ID:EPDNEW_M12962
Type:single initiation site
Name:Thsd4_2
Description:Mus musculus thrombospondin, type I, domain containing 4 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M12961  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38960,511,011 - 60,511,071EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2672033 AgrOrtholog
Ensembl Genes ENSMUSG00000032289 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034829 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000096257 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000123323 UniProtKB/TrEMBL
  ENSMUSP00000131418 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034829 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000098660 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000140824 UniProtKB/TrEMBL
  ENSMUST00000171654 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.20.100.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ADAM_spacer1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLAC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:207596 UniProtKB/Swiss-Prot
MGD MGI:2672033 ENTREZGENE
NCBI Gene 207596 ENTREZGENE
Pfam ADAM_spacer1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLAC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Thsd4 PhenoGen
PROSITE PLAC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TSP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF82895 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RTG1_MOUSE UniProtKB/TrEMBL
  D3Z044_MOUSE UniProtKB/TrEMBL
  Q19NU2_MOUSE UniProtKB/TrEMBL
  Q1W767_MOUSE UniProtKB/TrEMBL
  Q3UTY6 ENTREZGENE
  Q8C3I5_MOUSE UniProtKB/TrEMBL
  THSD4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BLE5 UniProtKB/Swiss-Prot