P4ha1 (procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide) - Rat Genome Database

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Gene: P4ha1 (procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide) Mus musculus
Analyze
Symbol: P4ha1
Name: procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
RGD ID: 731789
MGI Page MGI
Description: Contributes to procollagen-proline 4-dioxygenase activity. Involved in collagen fibril organization and peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Localizes to procollagen-proline 4-dioxygenase complex. Is expressed in several structures, including genitourinary system; jaw; limb; sensory organ; and skeleton. Orthologous to human P4HA1 (prolyl 4-hydroxylase subunit alpha 1); PARTICIPATES IN arginine and proline metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; arsane; arsenic atom.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4-PH alpha-1; AL022634; P4; P4ha; procollagen-proline,2-oxoglutarate-4-dioxygenase subunit alpha-1; prolyl 4-hydroxylase subunit alpha-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391059,159,019 - 59,209,126 (+)NCBIGRCm39mm39
GRCm39 Ensembl1059,159,118 - 59,209,126 (+)Ensembl
GRCm381059,323,197 - 59,373,304 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1059,323,296 - 59,373,304 (+)EnsemblGRCm38mm10GRCm38
MGSCv371058,786,044 - 58,836,052 (+)NCBIGRCm37mm9NCBIm37
MGSCv361058,718,730 - 58,767,701 (+)NCBImm8
Celera1060,423,571 - 60,473,579 (+)NCBICelera
Cytogenetic Map10B4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
adefovir pivoxil  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
benzoates  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A5  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
chloroacetaldehyde  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
desferrioxamine B  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
fenofibrate  (ISO)
ferric ammonium citrate  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
gamma-hexachlorocyclohexane  (ISO)
glucose  (ISO)
hydrogen sulfide  (EXP)
ifosfamide  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
ketamine  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
mercury dichloride  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methotrexate  (EXP)
methylmercury chloride  (ISO)
mitoxantrone  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
nickel dichloride  (ISO)
nitric oxide  (EXP)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenylephrine  (ISO)
pirinixic acid  (EXP)
propiconazole  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
ranitidine  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
SCH 23390  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
sodium fluoride  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
titanium dioxide  (EXP)
tolcapone  (ISO)
topotecan  (ISO)
valdecoxib  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
Yessotoxin  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1694844   PMID:7671812   PMID:7753822   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12904583   PMID:12958152  
PMID:14610273   PMID:14681479   PMID:15489334   PMID:15536133   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17135260   PMID:18287559   PMID:18799693   PMID:20362542  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22083510   PMID:22930750   PMID:23022409   PMID:24457600   PMID:24983771   PMID:26001784   PMID:26416771   PMID:26794322   PMID:27746211  
PMID:27818566   PMID:28378742   PMID:29502204   PMID:29615493   PMID:30121012   PMID:30193190   PMID:30457570   PMID:30550785   PMID:30919021   PMID:31029587   PMID:31202927   PMID:32325033  
PMID:32819558  


Genomics

Comparative Map Data
P4ha1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391059,159,019 - 59,209,126 (+)NCBIGRCm39mm39
GRCm39 Ensembl1059,159,118 - 59,209,126 (+)Ensembl
GRCm381059,323,197 - 59,373,304 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1059,323,296 - 59,373,304 (+)EnsemblGRCm38mm10GRCm38
MGSCv371058,786,044 - 58,836,052 (+)NCBIGRCm37mm9NCBIm37
MGSCv361058,718,730 - 58,767,701 (+)NCBImm8
Celera1060,423,571 - 60,473,579 (+)NCBICelera
Cytogenetic Map10B4NCBI
P4HA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1073,007,217 - 73,096,974 (-)EnsemblGRCh38hg38GRCh38
GRCh381073,007,217 - 73,096,866 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371074,766,975 - 74,856,624 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361074,436,981 - 74,526,630 (-)NCBINCBI36hg18NCBI36
Build 341074,436,987 - 74,526,614NCBI
Celera1068,052,119 - 68,141,888 (-)NCBI
Cytogenetic Map10q22.1NCBI
HuRef1068,760,779 - 68,850,247 (-)NCBIHuRef
CHM1_11075,048,716 - 75,138,475 (-)NCBICHM1_1
P4ha1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22027,302,046 - 27,352,098 (+)NCBI
Rnor_6.0 Ensembl2028,920,616 - 28,971,966 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02028,920,616 - 28,972,576 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02030,726,604 - 30,776,891 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2028,745,570 - 28,795,338 (+)NCBICelera
Cytogenetic Map20q11NCBI
P4ha1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,604,525 - 18,668,800 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543718,604,525 - 18,668,800 (+)NCBIChiLan1.0ChiLan1.0
P4HA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11072,017,493 - 72,106,083 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1072,017,500 - 72,106,083 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01069,554,722 - 69,643,765 (-)NCBIMhudiblu_PPA_v0panPan3
P4HA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1423,600,399 - 23,677,820 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl423,601,636 - 23,677,762 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha423,738,890 - 23,816,335 (-)NCBI
ROS_Cfam_1.0423,886,920 - 23,964,071 (-)NCBI
UMICH_Zoey_3.1423,785,865 - 23,863,342 (-)NCBI
UNSW_CanFamBas_1.0423,984,840 - 24,062,302 (-)NCBI
UU_Cfam_GSD_1.0424,339,447 - 24,416,949 (-)NCBI
P4ha1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721357,488,533 - 57,552,472 (+)NCBI
SpeTri2.0NW_0049365215,981,205 - 6,045,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
P4HA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1475,825,140 - 75,918,917 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11475,827,207 - 75,919,121 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21481,892,533 - 82,002,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
P4HA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1958,178,350 - 58,259,303 (+)NCBI
ChlSab1.1 Ensembl958,178,461 - 58,259,802 (+)Ensembl
P4ha1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247546,707,429 - 6,802,333 (-)NCBI

Position Markers
RH125320  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381059,371,375 - 59,371,465UniSTSGRCm38
MGSCv371058,834,123 - 58,834,213UniSTSGRCm37
Celera1060,471,650 - 60,471,740UniSTS
Cytogenetic Map10B4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102171529368255809Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102984430763844387Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103109840365098534Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103170104065701188Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103390000071000000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4140150475401504Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
26884421Cvht5_mcranial vault height 5, 10 week (mouse)104570000069300000Mouse
26884400Huml5_mhumerus length 5, 16 week (mouse)104640000069400000Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4684430782655287Mouse
4141159Phl2_mprogressive hearing loss 2 (mouse)Not determined104809840370276821Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105161730482655287Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
12904011Cfq11_mconditioned fear QTL 11 (mouse)105660406061105062Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir122mmu-miR-122-5pMirtarbaseexternal_infoqRT-PCRFunctional MTI (Weak)16459310

Predicted Target Of
Summary Value
Count of predictions:1211
Count of miRNA genes:434
Interacting mature miRNAs:495
Transcripts:ENSMUST00000009789, ENSMUST00000092512, ENSMUST00000105466
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001316370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001316371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003948602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_380368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_380369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE652325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE985798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX518478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY721363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U16162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000009789   ⟹   ENSMUSP00000009789
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1059,323,296 - 59,373,304 (+)Ensembl
RefSeq Acc Id: ENSMUST00000092512   ⟹   ENSMUSP00000090170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1059,323,364 - 59,371,956 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105466   ⟹   ENSMUSP00000101106
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1059,323,368 - 59,372,251 (+)Ensembl
RefSeq Acc Id: NM_001316370   ⟹   NP_001303299
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391059,159,118 - 59,209,126 (+)NCBI
GRCm381059,323,296 - 59,373,304 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001316371   ⟹   NP_001303300
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391059,159,118 - 59,209,126 (+)NCBI
GRCm381059,323,296 - 59,373,304 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011030   ⟹   NP_035160
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391059,159,118 - 59,209,126 (+)NCBI
GRCm381059,323,296 - 59,373,304 (+)NCBI
MGSCv371058,786,044 - 58,836,052 (+)RGD
Celera1060,423,571 - 60,473,579 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_001779474
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391059,159,075 - 59,209,107 (+)NCBI
GRCm381059,323,202 - 59,372,356 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779475
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391059,159,019 - 59,209,107 (+)NCBI
GRCm381059,323,197 - 59,372,356 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003948602
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391059,159,075 - 59,209,107 (+)NCBI
GRCm381059,323,197 - 59,372,356 (+)NCBI
Sequence:
RefSeq Acc Id: XR_380368
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391059,159,019 - 59,209,107 (+)NCBI
GRCm381059,323,202 - 59,372,356 (+)NCBI
Sequence:
RefSeq Acc Id: XR_380369
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391059,159,019 - 59,209,107 (+)NCBI
GRCm381059,323,197 - 59,372,356 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035160   ⟸   NM_011030
- Peptide Label: isoform 3 precursor
- UniProtKB: Q60715 (UniProtKB/Swiss-Prot),   Q3UF16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001303300   ⟸   NM_001316371
- Peptide Label: isoform 2 precursor
- UniProtKB: Q60715 (UniProtKB/Swiss-Prot),   Q3UF16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001303299   ⟸   NM_001316370
- Peptide Label: isoform 1 precursor
- UniProtKB: E9Q7B0 (UniProtKB/TrEMBL),   Q3TTT2 (UniProtKB/TrEMBL),   Q3UF16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000101106   ⟸   ENSMUST00000105466
RefSeq Acc Id: ENSMUSP00000009789   ⟸   ENSMUST00000009789
RefSeq Acc Id: ENSMUSP00000090170   ⟸   ENSMUST00000092512
Protein Domains
Fe2OG dioxygenase   TPR_REGION

Promoters
RGD ID:6819694
Promoter ID:MM_KWN:4205
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000105466,   OTTMUST00000086403,   OTTMUST00000086405
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361058,785,061 - 58,786,212 (+)MPROMDB
RGD ID:8672030
Promoter ID:EPDNEW_M14046
Type:multiple initiation site
Name:P4ha1_1
Description:Mus musculus procollagen-proline, 2-oxoglutarate 4-dioxygenase(proline 4-hydroxylase), alpha 1 polypeptide , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14047  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381059,323,368 - 59,323,428EPDNEW
RGD ID:8672032
Promoter ID:EPDNEW_M14047
Type:single initiation site
Name:P4ha1_2
Description:Mus musculus procollagen-proline, 2-oxoglutarate 4-dioxygenase(proline 4-hydroxylase), alpha 1 polypeptide , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14046  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381059,324,010 - 59,324,070EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97463 AgrOrtholog
Ensembl Genes ENSMUSG00000019916 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000009789 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000090170 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000101106 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000009789 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000092512 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000105466 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-contain_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18451 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97463 ENTREZGENE
NCBI Gene 18451 ENTREZGENE
Pfam 2OG-FeII_Oxy_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P4Ha_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen P4ha1 PhenoGen
PROSITE FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART P4Hc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9Q7B0 ENTREZGENE, UniProtKB/TrEMBL
  P4HA1_MOUSE UniProtKB/Swiss-Prot
  Q3TN84_MOUSE UniProtKB/TrEMBL
  Q3TTT2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UF16 ENTREZGENE, UniProtKB/TrEMBL
  Q60715 ENTREZGENE
UniProt Secondary Q3TEB7 UniProtKB/Swiss-Prot
  Q80T05 UniProtKB/Swiss-Prot
  Q91VJ7 UniProtKB/Swiss-Prot