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Gene: Col10a1 (collagen, type X, alpha 1) Mus musculus
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Symbol: Col10a1
Name: collagen, type X, alpha 1
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Localizes to the cell cortex; collagen trimer; and extracellular matrix. Used to study Schmid metaphyseal chondrodysplasia. Human ortholog(s) of this gene implicated in Schmid metaphyseal chondrodysplasia and osteochondrodysplasia. Is expressed in several structures, including cartilage; limb; pelvic girdle musculature; and skeletal system. Orthologous to human COL10A1 (collagen type X alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Col10; Col10a-1; collagen alpha-1(X) chain; procollagen, type X, alpha 1
Orthologs:
Homo sapiens (human) : COL10A1 (collagen type X alpha 1 chain)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Col10a1 (collagen type X alpha 1 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col10a1 (collagen type X alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL10A1 (collagen type X alpha 1 chain)
Canis lupus familiaris (dog) : COL10A1 (collagen type X alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col10a1 (collagen type X alpha 1 chain)
Sus scrofa (pig) : COL10A1 (collagen type X alpha 1 chain)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm381034,389,981 - 34,397,085 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371034,109,787 - 34,116,891 (+)NCBIGRCm37mm9NCBIm37
MGSCv361034,079,251 - 34,087,720 (+)NCBImm8
Celera1035,298,560 - 35,305,664 (+)NCBICelera
Cytogenetic Map10 B1NCBI
cM Map1018.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (GRCm38)
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Additional Information

External Database Links
 
More on Col10a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: mm9 mm10
MGI Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 735282
Created: 2004-02-06
Species: Mus musculus
Last Modified: 2019-11-13
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.