Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular matrix constituent secretion
go back to main search page
Accession:GO:0070278 term browser browse the term
Definition:The controlled release of molecules that form the extracellular matrix, including carbohydrates and glycoproteins by a cell.
Synonyms:exact_synonym: ECM constituent secretion;   ECM secretion


show annotations for term's descendants           Sort by:
extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccn2 cellular communication network factor 2 IMP positive regulation RGD PMID:18613219 RGD:2314619 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3-like 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4438316|PMID:19767743)		 UniProt
RGD		 PMID:19767743 GO_REF:0000024 MGI:4438316 NCBI chr 3:77,952,589...77,993,513
Ensembl chr 3:77,952,540...77,993,456 		JBrowse link
G Eng endoglin IMP RGD PMID:15539634 RGD:1601032 NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Tmem38b transmembrane protein 38B acts_upstream_of_or_within ISO MGI:1921416 (MGI:6141091|PMID:27188440) RGD PMID:27188440 MGI:6141091 NCBI chr 5:68,460,304...68,496,026
Ensembl chr 5:68,460,304...68,496,025 		JBrowse link
G Zfp469 zinc finger protein 469 acts_upstream_of_or_within ISO MGI:6765940 (MGI:6765278|PMID:34368841) RGD PMID:34368841 MGI:6765278 NCBI chr19:50,282,434...50,324,010 JBrowse link
negative regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adtrp androgen-dependent TFPI-regulating protein involved_in ISO (PMID:28341552) RGD PMID:28341552 NCBI chr17:22,930,012...22,993,834
Ensembl chr17:22,930,740...22,993,826 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:6158728|PMID:26491108) RGD PMID:26491108 MGI:6158728 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A involved_in ISO UniProtKB:P25119 (MGI:6158728|PMID:26491108) RGD PMID:26491108 MGI:6158728 NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in ISO UniProtKB:P25118 (MGI:6158728|PMID:26491108) RGD PMID:26491108 MGI:6158728 NCBI chr 5:157,070,642...157,104,216
Ensembl chr 5:157,070,642...157,104,206 		JBrowse link
polarized secretion of basement membrane proteins in epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO
IEA		 MGI:5645931 (MGI:6504857|PMID:33144400)
GO_REF:0000107		 RGD
Ensembl		 PMID:33144400 GO_REF:0000107 MGI:6504857 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
positive regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen IDA RGD PMID:21419085 RGD:5129171 NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977 		JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in IEA
ISO		 GO_REF:0000107
(MGI:3640731|PMID:16730346)		 Ensembl
RGD		 PMID:16730346 GO_REF:0000107 MGI:3640731 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Cpb2 carboxypeptidase B2 IMP RGD PMID:23369837 RGD:7243115 NCBI chr15:50,557,722...50,606,569
Ensembl chr15:50,557,717...50,606,556 		JBrowse link
G Ier3ip1 immediate early response 3 interacting protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:33122427)		 UniProt
RGD		 PMID:33122427 GO_REF:0000024
G Rgcc regulator of cell cycle involved_in ISO (PMID:19158077) RGD PMID:19158077 NCBI chr15:54,662,483...54,675,320
Ensembl chr15:54,662,483...54,681,141 		JBrowse link
regulation of extracellular matrix constituent secretion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 involved_in ISO (PMID:31932796) RGD PMID:31932796 NCBI chr 1:227,285,510...227,384,553
Ensembl chr 1:227,285,210...227,382,863 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19748
    cellular process 18161
      export from cell 1068
        secretion by cell 989
          extracellular matrix constituent secretion 16
            basement membrane constituent secretion + 1
            dentin extracellular matrix secretion 0
            negative regulation of extracellular matrix constituent secretion 4
            positive regulation of extracellular matrix constituent secretion 5
            regulation of extracellular matrix constituent secretion + 10
Path 2
Term Annotations click to browse term
  biological_process 19748
    cellular process 18161
      cellular component organization or biogenesis 6791
        cellular component organization 6546
          extracellular structure organization 323
            extracellular matrix organization 322
              extracellular matrix constituent secretion 16
                basement membrane constituent secretion + 1
                dentin extracellular matrix secretion 0
                negative regulation of extracellular matrix constituent secretion 4
                positive regulation of extracellular matrix constituent secretion 5
                regulation of extracellular matrix constituent secretion + 10
paths to the root