Lamb1 (laminin B1) - Rat Genome Database

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Gene: Lamb1 (laminin B1) Mus musculus
Analyze
Symbol: Lamb1
Name: laminin B1
RGD ID: 1314860
MGI Page MGI
Description: Enables enzyme binding activity; glycosphingolipid binding activity; and integrin binding activity. Involved in negative regulation of cell adhesion. Acts upstream of or within cell migration; embryo implantation; and neuron projection development. Located in basement membrane; nucleus; and perinuclear region of cytoplasm. Part of laminin-1 complex and laminin-10 complex. Is expressed in several structures, including alimentary system; extraembryonic component; eye; genitourinary system; and nervous system. Human ortholog(s) of this gene implicated in autistic disorder and lissencephaly 5. Orthologous to human LAMB1 (laminin subunit beta 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C77966; C80098; C81607; D130003D08Rik; Lamb; Lamb-1; Lamb1-1; laminin B1 chain; laminin B1 subunit 1; laminin subunit beta-1; laminin-1 subunit beta; laminin-10 subunit beta; laminin-111; laminin-12 subunit beta; laminin-2 subunit beta; laminin-6 subunit beta; laminin-8 subunit beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Lamb1-2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,315,230 - 31,379,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,315,233 - 31,379,643 (+)EnsemblGRCm39 Ensembl
GRCm381231,265,146 - 31,329,644 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,265,234 - 31,329,644 (+)EnsemblGRCm38mm10GRCm38
MGSCv371231,950,159 - 32,014,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361231,851,443 - 31,915,700 (+)NCBIMGSCv36mm8
Celera1232,713,386 - 32,777,732 (+)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
6alpha-methylprednisolone  (ISO)
acetic acid  (EXP)
acrolein  (ISO)
aldehydo-D-glucosamine  (EXP)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
atrazine  (ISO)
bazedoxifene  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-D-glucosamine  (EXP)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bromochloroacetic acid  (EXP)
butanal  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
chloropicrin  (ISO)
chloroquine  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
deoxynivalenol  (ISO)
dexamethasone  (EXP)
dieldrin  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enalapril  (ISO)
ethyl methanesulfonate  (ISO)
fenamidone  (EXP)
fipronil  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glucose  (EXP)
glyphosate  (ISO)
griseofulvin  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
lactacystin  (EXP)
lipopolysaccharide  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury(1+)  (ISO)
miconazole  (EXP)
mitoxantrone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nicotine  (ISO)
nitrofen  (ISO)
Nor-9-carboxy-delta9-THC  (ISO)
ochratoxin A  (ISO)
oleic acid  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
potassium chromate  (ISO)
raloxifene  (EXP)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
thapsigargin  (EXP,ISO)
thioacetamide  (ISO)
topotecan  (ISO)
Tributyltin oxide  (EXP,ISO)
triclosan  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mutation screening and association analysis of six candidate genes for autism on chromosome 7q. Bonora E, etal., Eur J Hum Genet. 2005 Feb;13(2):198-207.
2. Molecular cloning of a diverged homeobox gene that is rapidly down-regulated during the G0/G1 transition in vascular smooth muscle cells. Gorski DH, etal., Mol Cell Biol 1993 Jun;13(6):3722-33.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1292752   PMID:1339296   PMID:1612587   PMID:1678389   PMID:1725162   PMID:1907584   PMID:1922066   PMID:2088723   PMID:2100263   PMID:2119632   PMID:2436975   PMID:2570028  
PMID:2993224   PMID:3109910   PMID:3402995   PMID:3493487   PMID:3794389   PMID:6189826   PMID:6209134   PMID:7516699   PMID:7544312   PMID:7601910   PMID:7639691   PMID:7669546  
PMID:7851641   PMID:7873892   PMID:7895274   PMID:7898049   PMID:7925005   PMID:7949730   PMID:8034675   PMID:8043949   PMID:8075499   PMID:8082056   PMID:8219353   PMID:8276400  
PMID:8286607   PMID:8359228   PMID:8482578   PMID:8486351   PMID:8562707   PMID:8613743   PMID:8636104   PMID:8645318   PMID:8672144   PMID:8719886   PMID:8722691   PMID:8725284  
PMID:8812145   PMID:8872465   PMID:8918877   PMID:8951069   PMID:8995758   PMID:9004048   PMID:9034910   PMID:9043083   PMID:9151673   PMID:9169128   PMID:9201115   PMID:9219532  
PMID:9226367   PMID:9264260   PMID:9299121   PMID:9344654   PMID:9365514   PMID:9373037   PMID:9382709   PMID:9390664   PMID:9396756   PMID:9489770   PMID:9506922   PMID:9598327  
PMID:9603432   PMID:9719032   PMID:9761722   PMID:9827803   PMID:9833687   PMID:9885251   PMID:9892176   PMID:10349636   PMID:10433800   PMID:10444590   PMID:10625553   PMID:10706142  
PMID:10725249   PMID:10814726   PMID:10866045   PMID:10880400   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11242070   PMID:11307167   PMID:11431694   PMID:11435469  
PMID:11784026   PMID:12015298   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12631063   PMID:12682087   PMID:12743034   PMID:12820173   PMID:12904583   PMID:12921739   PMID:14610273  
PMID:14618389   PMID:14730302   PMID:14998921   PMID:15056720   PMID:15063179   PMID:15102706   PMID:15183724   PMID:15207330   PMID:15474030   PMID:15895400   PMID:16041630   PMID:16100707  
PMID:16141072   PMID:16141073   PMID:16429555   PMID:16554364   PMID:16602821   PMID:16631359   PMID:17334455   PMID:17452023   PMID:17517882   PMID:17601529   PMID:18055048   PMID:18082680  
PMID:18287559   PMID:18418846   PMID:18559345   PMID:18590826   PMID:18718860   PMID:18757743   PMID:19074617   PMID:19118221   PMID:19243017   PMID:19334288   PMID:19416897   PMID:19554387  
PMID:19783738   PMID:19955426   PMID:20332116   PMID:20731416   PMID:20874775   PMID:20939100   PMID:21172822   PMID:21267068   PMID:21311558   PMID:21491542   PMID:21524702   PMID:21677750  
PMID:21873635   PMID:21876163   PMID:21903675   PMID:22083510   PMID:22159717   PMID:22442722   PMID:22613833   PMID:22688677   PMID:22767514   PMID:22911573   PMID:22911783   PMID:23041440  
PMID:23091646   PMID:23153495   PMID:23273220   PMID:23325811   PMID:23472759   PMID:23529140   PMID:23948589   PMID:24006456   PMID:24191021   PMID:24449835   PMID:24457600   PMID:24706882  
PMID:24760005   PMID:24952961   PMID:26555376   PMID:26705335   PMID:26794322   PMID:27068110   PMID:28071719   PMID:28593951   PMID:28636612   PMID:28893945   PMID:29361536   PMID:29449451  
PMID:29459677   PMID:29599141   PMID:30188322   PMID:30550785   PMID:30579834   PMID:32325033   PMID:32439764   PMID:32592286   PMID:33144400   PMID:34156983   PMID:34189436   PMID:34321999  
PMID:34323105   PMID:34427057   PMID:35008625   PMID:35132078   PMID:35449600   PMID:35613264   PMID:36350252   PMID:36905927   PMID:38103869  


Genomics

Comparative Map Data
Lamb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,315,230 - 31,379,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,315,233 - 31,379,643 (+)EnsemblGRCm39 Ensembl
GRCm381231,265,146 - 31,329,644 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,265,234 - 31,329,644 (+)EnsemblGRCm38mm10GRCm38
MGSCv371231,950,159 - 32,014,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361231,851,443 - 31,915,700 (+)NCBIMGSCv36mm8
Celera1232,713,386 - 32,777,732 (+)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.39NCBI
LAMB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,923,799 - 108,003,161 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,923,799 - 108,003,213 (-)EnsemblGRCh38hg38GRCh38
GRCh377107,564,244 - 107,643,606 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,351,499 - 107,431,040 (-)NCBINCBI36Build 36hg18NCBI36
Build 347107,158,213 - 107,237,755NCBI
Celera7102,371,233 - 102,450,770 (-)NCBICelera
Cytogenetic Map7q31.1NCBI
HuRef7101,926,690 - 102,006,298 (-)NCBIHuRef
CHM1_17107,497,967 - 107,577,516 (-)NCBICHM1_1
T2T-CHM13v2.07109,241,996 - 109,321,407 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,925,375 - 107,004,933 (-)NCBI
Lamb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,562,849 - 53,630,118 (+)NCBIGRCr8
mRatBN7.2647,835,492 - 47,902,585 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl647,835,525 - 47,902,585 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0650,528,796 - 50,596,593 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,528,823 - 50,596,079 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,204,031 - 59,271,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,115,671 - 49,183,374 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,109,263 - 49,186,072 (+)NCBI
Celera647,038,296 - 47,105,077 (+)NCBICelera
Cytogenetic Map6q16NCBI
Lamb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,241,235 - 12,305,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541012,241,235 - 12,305,433 (-)NCBIChiLan1.0ChiLan1.0
LAMB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,769,878 - 144,849,511 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17193,039,847 - 193,120,895 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,905,761 - 99,985,233 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,627,488 - 112,706,554 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,627,488 - 112,706,554 (-)Ensemblpanpan1.1panPan2
LAMB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,634,640 - 12,700,311 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,630,554 - 12,700,308 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,273,909 - 12,344,544 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01812,901,205 - 12,971,843 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1812,886,065 - 13,160,390 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,719,649 - 12,788,770 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,639,931 - 12,709,079 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01812,866,134 - 12,936,827 (+)NCBIUU_Cfam_GSD_1.0
Lamb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,053,363 - 55,121,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,177,158 - 16,247,165 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,177,200 - 16,245,268 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,671,152 - 107,772,269 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,670,120 - 107,747,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,440,049 - 118,515,695 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,829,287 - 76,914,348 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,829,443 - 76,914,324 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604226,949,313 - 27,034,081 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473921,771,226 - 21,843,884 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473921,771,617 - 21,843,888 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lamb1
1923 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:818
Count of miRNA genes:476
Interacting mature miRNAs:560
Transcripts:ENSMUST00000002979, ENSMUST00000164009, ENSMUST00000164228, ENSMUST00000164919, ENSMUST00000169065, ENSMUST00000169088, ENSMUST00000170495, ENSMUST00000172134
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
14746972Manh72_mmandible shape 72 (mouse)121061528144615281Mouse
10401249Bglu15_mblood glucose level 15 (mouse)Not determined121062064244620809Mouse
13524843Ppiq8_mprepulse inhibition QTL 8 (mouse)121104319450945796Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141516slwr_mslowlearner (mouse)Not determined1239247546392614Mouse
13524839Ppiq10_mprepulse inhibition QTL 10 (mouse)121304319554945798Mouse
10043977Obq34_mobesity QTL 34 (mouse)Not determined121514733149147331Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
26884413Bzwq9_mbi-zygomatic width QTL 9, 10 week (mouse)121615000147746783Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
15039339Nmrs29_mNAFLD-associated magnetic resonance shift 29 (mouse)121782585251825852Mouse
10043848Hdlq90_mHDL QTL 90 (mouse)Not determined121783993951840081Mouse
1300870Ath18_matherosclerosis 18 (mouse)Not determined121825996652260067Mouse
12904956Edlmmq10_mextensor digitorum longus muscle mass QTL 10 (mouse)121973983353739833Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse

Markers in Region
Lamb1-1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371232,014,315 - 32,014,480UniSTSGRCm37
MGSCv371856,912,893 - 56,913,047UniSTSGRCm37
Celera1232,777,543 - 32,777,708UniSTS
Celera1858,063,684 - 58,063,838UniSTS
Cytogenetic Map12A2-A3UniSTS
cM Map1220.0UniSTS
cM Map1829.0UniSTS
cM Map1213.39UniSTS
RH126801  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,278,600 - 31,278,907UniSTSGRCm38
MGSCv371231,963,465 - 31,963,772UniSTSGRCm37
Celera1232,726,692 - 32,726,999UniSTS
Cytogenetic Map12A2-A3UniSTS
Whitehead/MRC_RH12306.49UniSTS
M15525  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,329,542 - 31,329,618UniSTSGRCm38
MGSCv371232,014,407 - 32,014,483UniSTSGRCm37
Celera1232,777,635 - 32,777,711UniSTS
Cytogenetic Map12A2-A3UniSTS
Whitehead_YAC12 UniSTS
C81607  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,329,221 - 31,329,490UniSTSGRCm38
MGSCv371232,014,086 - 32,014,355UniSTSGRCm37
Celera1232,777,314 - 32,777,583UniSTS
Cytogenetic Map12A2-A3UniSTS
Whitehead/MRC_RH12259.09UniSTS
UniSTS:236828  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,326,224 - 31,326,360UniSTSGRCm38
MGSCv371232,011,089 - 32,011,225UniSTSGRCm37
Celera1232,774,317 - 32,774,453UniSTS
Cytogenetic Map12A2-A3UniSTS
RH126280  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,268,104 - 31,268,313UniSTSGRCm38
MGSCv371231,952,969 - 31,953,178UniSTSGRCm37
Celera1232,716,196 - 32,716,405UniSTS
Cytogenetic Map12A2-A3UniSTS
Whitehead/MRC_RH12303.77UniSTS
Lamb1-1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381856,753,239 - 56,753,393UniSTSGRCm38
MGSCv371856,912,893 - 56,913,047UniSTSGRCm37
Celera1858,063,684 - 58,063,838UniSTS
Cytogenetic Map18D3UniSTS
Cytogenetic Map12A2-A3UniSTS
cM Map1213.39UniSTS
Lamb1-1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,329,450 - 31,329,615UniSTSGRCm38
MGSCv371232,014,315 - 32,014,480UniSTSGRCm37
Celera1232,777,543 - 32,777,708UniSTS
Cytogenetic Map12A2-A3UniSTS
cM Map1220.0UniSTS
Lamb1-1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12A2-A3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK013952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC121790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ093872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR974423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT571245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M15525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S43759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000002979   ⟹   ENSMUSP00000002979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,315,292 - 31,379,643 (+)Ensembl
GRCm38.p6 Ensembl1231,265,293 - 31,329,644 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,328,174 - 31,328,938 (+)Ensembl
GRCm38.p6 Ensembl1231,278,175 - 31,278,939 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,315,293 - 31,318,859 (+)Ensembl
GRCm38.p6 Ensembl1231,265,294 - 31,268,860 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,326,655 - 31,337,985 (+)Ensembl
GRCm38.p6 Ensembl1231,276,656 - 31,287,986 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169088   ⟹   ENSMUSP00000132778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,315,233 - 31,379,492 (+)Ensembl
GRCm38.p6 Ensembl1231,265,234 - 31,329,493 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170495   ⟹   ENSMUSP00000132001
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,315,296 - 31,316,792 (+)Ensembl
GRCm38.p6 Ensembl1231,265,297 - 31,266,793 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,373,520 - 31,374,453 (+)Ensembl
GRCm38.p6 Ensembl1231,323,521 - 31,324,454 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239496   ⟹   ENSMUSP00000159366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1231,315,293 - 31,379,638 (+)Ensembl
GRCm38.p6 Ensembl1231,265,294 - 31,329,639 (+)Ensembl
RefSeq Acc Id: NM_008482   ⟹   NP_032508
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,315,292 - 31,379,643 (+)NCBI
GRCm381231,265,293 - 31,329,644 (+)NCBI
MGSCv371231,950,159 - 32,014,504 (+)RGD
Celera1232,713,386 - 32,777,732 (+)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514993   ⟹   XP_006515056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391231,315,230 - 31,379,643 (+)NCBI
GRCm381231,265,239 - 31,329,644 (+)NCBI
Sequence:
RefSeq Acc Id: NP_032508   ⟸   NM_008482
- Peptide Label: precursor
- UniProtKB: P02469 (UniProtKB/Swiss-Prot),   E9PXZ9 (UniProtKB/Swiss-Prot),   E9QN70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006515056   ⟸   XM_006514993
- Peptide Label: isoform X1
- UniProtKB: E9PXZ9 (UniProtKB/Swiss-Prot),   P02469 (UniProtKB/Swiss-Prot),   E9QN70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000132001   ⟸   ENSMUST00000170495
RefSeq Acc Id: ENSMUSP00000159366   ⟸   ENSMUST00000239496
RefSeq Acc Id: ENSMUSP00000132778   ⟸   ENSMUST00000169088
RefSeq Acc Id: ENSMUSP00000002979   ⟸   ENSMUST00000002979
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P02469-F1-model_v2 AlphaFold P02469 1-1786 view protein structure

Promoters
RGD ID:8678082
Promoter ID:EPDNEW_M17072
Type:initiation region
Name:Lamb1_1
Description:Mus musculus laminin B1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381231,265,296 - 31,265,356EPDNEW
RGD ID:6823112
Promoter ID:MM_KWN:11432
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_008482,   UC007NHC.1,   UC007NHE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361231,949,899 - 31,950,399 (+)MPROMDB
RGD ID:6823113
Promoter ID:MM_KWN:11433
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   Kidney,   Lung,   MEF_B6
Transcripts:UC007NHF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361231,960,561 - 31,963,112 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96743 AgrOrtholog
Ensembl Genes ENSMUSG00000002900 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000002979 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000002979.16 UniProtKB/Swiss-Prot
  ENSMUST00000169088 ENTREZGENE
  ENSMUST00000169088.8 UniProtKB/Swiss-Prot
  ENSMUST00000170495.3 UniProtKB/TrEMBL
  ENSMUST00000239496.2 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_IV_B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16777 UniProtKB/TrEMBL
MGD MGI:96743 ENTREZGENE
NCBI Gene 16777 ENTREZGENE
PANTHER LAMININ SUBUNIT BETA-1 UniProtKB/TrEMBL
  MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN 9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMININ_IV_B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lamb1 PhenoGen
PRINTS EGFLAMININ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_LAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMININ_IVB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_Lam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LamNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prefoldin UniProtKB/TrEMBL
UniProt B9EKB0_MOUSE UniProtKB/TrEMBL
  E9PXZ9 ENTREZGENE
  E9Q339_MOUSE UniProtKB/TrEMBL
  E9QN70 ENTREZGENE, UniProtKB/TrEMBL
  LAMB1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q0V927_MOUSE UniProtKB/TrEMBL
  Q3TNZ8_MOUSE UniProtKB/TrEMBL
  Q3UHL7_MOUSE UniProtKB/TrEMBL
  Q3UR38_MOUSE UniProtKB/TrEMBL
  Q8K271_MOUSE UniProtKB/TrEMBL
  Q9CRX6_MOUSE UniProtKB/TrEMBL
UniProt Secondary E9PXZ9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Lamb1  laminin B1  Lamb1-1  laminin B1 subunit 1  Symbol and/or name change 5135510 APPROVED