Fermt1 (fermitin family member 1) - Rat Genome Database

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Gene: Fermt1 (fermitin family member 1) Mus musculus
Analyze
Symbol: Fermt1
Name: fermitin family member 1
RGD ID: 1315646
MGI Page MGI
Description: Enables actin filament binding activity. Involved in several processes, including positive regulation of cell adhesion; regulation of gene expression; and regulation of signal transduction. Located in focal adhesion. Is expressed in several structures, including alimentary system; genitourinary system; immune system; lung; and skin. Used to study Kindler syndrome. Human ortholog(s) of this gene implicated in Kindler syndrome; telangiectasis; and vesiculobullous skin disease. Orthologous to human FERMT1 (FERM domain containing kindlin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5830467P10Rik; fermitin family homolog 1; Kind; Kindlin-1; RP23-308A23.1; unc-112-related protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,746,097 - 132,787,956 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,746,309 - 132,787,826 (-)EnsemblGRCm39 Ensembl
GRCm382132,904,177 - 132,946,036 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,904,389 - 132,945,906 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,729,915 - 132,771,772 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,595,620 - 132,637,477 (-)NCBIMGSCv36mm8
Celera2134,125,730 - 134,167,433 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
fonofos  (ISO)
furan  (ISO)
glycidol  (ISO)
indometacin  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
parathion  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
potassium dichromate  (EXP)
progesterone  (ISO)
Ptaquiloside  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
testosterone  (EXP)
tributylstannane  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell junction  (ISO,ISS)
cell periphery  (ISO)
cytoplasm  (ISO)
cytoskeleton  (IEA)
cytosol  (ISO,ISS)
focal adhesion  (IBA,IDA,ISO)
ruffle membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Talins and kindlins: partners in integrin-mediated adhesion. Calderwood DA, etal., Nat Rev Mol Cell Biol. 2013 Aug;14(8):503-17. doi: 10.1038/nrm3624. Epub 2013 Jul 17.
2. Identification of mutations in a new gene encoding a FERM family protein with a pleckstrin homology domain in Kindler syndrome. Jobard F, etal., Hum Mol Genet. 2003 Apr 15;12(8):925-35.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16876785   PMID:18554416   PMID:19057668   PMID:19240021  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22561348   PMID:23209705   PMID:24165133   PMID:24681597   PMID:25591451   PMID:26151572   PMID:26821125   PMID:26903501   PMID:26993041  
PMID:27990663   PMID:28290610   PMID:28363736   PMID:28501563   PMID:28604778   PMID:28954813   PMID:29330144   PMID:30875130   PMID:30883226   PMID:31429758   PMID:36883731  


Genomics

Comparative Map Data
Fermt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,746,097 - 132,787,956 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,746,309 - 132,787,826 (-)EnsemblGRCm39 Ensembl
GRCm382132,904,177 - 132,946,036 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,904,389 - 132,945,906 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,729,915 - 132,771,772 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,595,620 - 132,637,477 (-)NCBIMGSCv36mm8
Celera2134,125,730 - 134,167,433 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.8NCBI
FERMT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38206,074,845 - 6,123,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl206,074,845 - 6,123,214 (-)EnsemblGRCh38hg38GRCh38
GRCh37206,055,492 - 6,103,677 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36206,003,492 - 6,052,191 (-)NCBINCBI36Build 36hg18NCBI36
Build 34206,003,492 - 6,052,191NCBI
Celera206,126,766 - 6,175,354 (-)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef206,012,168 - 6,061,355 (-)NCBIHuRef
CHM1_1206,055,497 - 6,104,189 (-)NCBICHM1_1
T2T-CHM13v2.0206,116,428 - 6,164,613 (-)NCBIT2T-CHM13v2.0
Fermt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83140,624,434 - 140,666,419 (-)NCBIGRCr8
mRatBN7.23120,171,301 - 120,213,555 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3120,171,561 - 120,213,555 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3124,066,663 - 124,106,362 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03132,670,283 - 132,712,190 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03130,322,805 - 130,362,509 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03125,566,744 - 125,607,864 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3125,566,643 - 125,607,735 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03132,049,511 - 132,090,550 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,699,769 - 120,744,016 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13120,607,515 - 120,645,912 (-)NCBI
Celera3118,957,538 - 118,999,128 (-)NCBICelera
Cytogenetic Map3q36NCBI
Fermt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541516,446,934 - 16,483,369 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541516,447,921 - 16,483,221 (-)NCBIChiLan1.0ChiLan1.0
FERMT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,995,642 - 7,045,908 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1206,997,144 - 7,043,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0206,063,480 - 6,120,206 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1205,856,287 - 5,902,251 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl205,856,287 - 5,902,251 (-)Ensemblpanpan1.1panPan2
FERMT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12415,748,632 - 15,785,025 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2415,748,629 - 15,782,880 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2415,570,788 - 15,607,260 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,151,297 - 16,187,696 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2416,153,502 - 16,185,964 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12415,757,632 - 15,794,124 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02415,866,168 - 15,902,611 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,197,744 - 16,234,285 (+)NCBIUU_Cfam_GSD_1.0
Fermt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640164,550,560 - 164,587,721 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648512,985,552 - 13,016,906 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648512,985,552 - 13,016,997 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FERMT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1715,080,587 - 15,137,753 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11715,080,585 - 15,137,947 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21716,443,838 - 16,504,032 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FERMT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,006,824 - 32,060,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,009,615 - 32,062,211 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607112,480,750 - 12,534,757 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fermt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,880,877 - 6,915,051 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,881,477 - 6,914,910 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1086
Count of miRNA genes:633
Interacting mature miRNAs:768
Transcripts:ENSMUST00000038280, ENSMUST00000134937, ENSMUST00000143981, ENSMUST00000144342
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
13207586Mwmlpt2_mMorris water maze latency to platform, training, 2 (mouse)2131616184139216184Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13207590Mwmlpa2_mMorris water maze latency to platform, all, 2 (mouse)2131616184139616184Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse

Markers in Region
5830467P10Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map2 UniSTS
cM Map2 UniSTS
D2Mit508  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,941,638 - 132,941,886UniSTSGRCm38
MGSCv372132,767,374 - 132,767,622UniSTSGRCm37
Celera2134,163,039 - 134,163,287UniSTS
Cytogenetic Map2F2UniSTS
cM Map2 UniSTS
Whitehead_YAC2 UniSTS
D2Dcr76  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,928,683 - 132,928,813UniSTSGRCm38
MGSCv372132,754,419 - 132,754,549UniSTSGRCm37
Celera2134,150,238 - 134,150,368UniSTS
Cytogenetic Map2F2UniSTS
cM Map2 UniSTS
5830467P10Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2F2UniSTS
cM Map2 UniSTS
5830467P10Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2F2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000038280   ⟹   ENSMUSP00000047616
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,746,309 - 132,787,826 (-)Ensembl
GRCm38.p6 Ensembl2132,904,389 - 132,945,906 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,746,309 - 132,787,549 (-)Ensembl
GRCm38.p6 Ensembl2132,904,389 - 132,945,629 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,781,016 - 132,783,883 (-)Ensembl
GRCm38.p6 Ensembl2132,939,096 - 132,941,963 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,778,033 - 132,784,017 (-)Ensembl
GRCm38.p6 Ensembl2132,936,113 - 132,942,097 (-)Ensembl
RefSeq Acc Id: NM_198029   ⟹   NP_932146
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,746,099 - 132,787,956 (-)NCBI
GRCm382132,904,179 - 132,946,036 (-)NCBI
MGSCv372132,729,915 - 132,771,772 (-)RGD
Celera2134,125,730 - 134,167,433 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499507   ⟹   XP_006499570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,746,097 - 132,784,005 (-)NCBI
GRCm382132,904,177 - 132,942,085 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_932146 (Get FASTA)   NCBI Sequence Viewer  
  XP_006499570 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH29093 (Get FASTA)   NCBI Sequence Viewer  
  AAQ13461 (Get FASTA)   NCBI Sequence Viewer  
  BAC34417 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000047616
  ENSMUSP00000047616.5
GenBank Protein P59113 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_932146   ⟸   NM_198029
- UniProtKB: A2ANX1 (UniProtKB/Swiss-Prot),   Q8BQG6 (UniProtKB/Swiss-Prot),   P59113 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006499570   ⟸   XM_006499507
- Peptide Label: isoform X1
- UniProtKB: Q4W4Z0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000047616   ⟸   ENSMUST00000038280
Protein Domains
FERM   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59113-F1-model_v2 AlphaFold P59113 1-677 view protein structure

Promoters
RGD ID:6830633
Promoter ID:MM_KWN:31877
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver
Transcripts:NM_198029,   OTTMUST00000037214,   UC008MNP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362132,771,141 - 132,772,767 (-)MPROMDB
RGD ID:6878872
Promoter ID:EPDNEW_M2887
Type:multiple initiation site
Name:Fermt1_2
Description:Mus musculus fermitin family member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2888  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382132,945,766 - 132,945,826EPDNEW
RGD ID:6878874
Promoter ID:EPDNEW_M2888
Type:initiation region
Name:Fermt1_1
Description:Mus musculus fermitin family member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2887  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382132,946,036 - 132,946,096EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443583 AgrOrtholog
Ensembl Genes ENSMUSG00000027356 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000038280 ENTREZGENE
  ENSMUST00000038280.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Band_41_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FERM_central UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kindlin/fermitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kindlin_2_N UniProtKB/Swiss-Prot
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_Kindlin/fermitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:241639 UniProtKB/Swiss-Prot
MGD MGI:2443583 ENTREZGENE
NCBI Gene 241639 ENTREZGENE
PANTHER FERMITIN FAMILY HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FERM_M UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kindlin_2_N UniProtKB/Swiss-Prot
  PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fermt1 PhenoGen
PROSITE FERM_2 UniProtKB/Swiss-Prot
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART B41 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47031 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ANX1 ENTREZGENE
  FERM1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q4W4Z0 ENTREZGENE, UniProtKB/TrEMBL
  Q8BQG6 ENTREZGENE
UniProt Secondary A2ANX1 UniProtKB/Swiss-Prot
  Q8BQG6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Fermt1  fermitin family member 1    fermitin family homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED