Gpm6b (glycoprotein m6b) - Rat Genome Database
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Gene: Gpm6b (glycoprotein m6b) Mus musculus
Analyze
Symbol: Gpm6b
Name: glycoprotein m6b
RGD ID: 1551405
MGI Page MGI
Description: Involved in negative regulation of protein localization to cell surface and negative regulation of serotonin uptake. Localizes to membrane raft and plasma membrane. Is expressed in central nervous system; early nephron; gonad; and retina. Orthologous to human GPM6B (glycoprotein M6B); INTERACTS WITH 4,4'-diaminodiphenylmethane; 4-hydroxyphenyl retinamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI593561; Gpm; Gpm6; M6B; neuronal membrane glycoprotein M6-b
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,021,775 - 165,172,029 (+)NCBIGRCm39mm39
GRCm38X166,238,943 - 166,389,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,238,911 - 166,388,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X162,676,875 - 162,826,965 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X161,583,077 - 161,733,093 (+)NCBImm8
CeleraX149,417,598 - 149,568,704 (+)NCBICelera
Cytogenetic MapXF5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6alpha-methylprednisolone  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsenous acid  (ISO)
astemizole  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butanal  (ISO)
choline  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (EXP)
etoposide  (ISO)
folic acid  (EXP)
furan  (ISO)
genistein  (EXP)
glycidol  (ISO)
indometacin  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (EXP)
N-nitrosodiethylamine  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
prednisolone  (ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium aurothiomalate  (ISO)
sulforaphane  (ISO)
testosterone enanthate  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
xylitol  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:1286213   PMID:8661015   PMID:8807448   PMID:8889548   PMID:9554989   PMID:9669312   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11749036   PMID:12477932   PMID:15328020  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16844427   PMID:17114649   PMID:18287559   PMID:18581270   PMID:20436479   PMID:21267068   PMID:21386911  
PMID:21677750   PMID:21873635   PMID:23322581   PMID:23341629   PMID:24768641   PMID:24917275   PMID:28489004   PMID:29111324   PMID:29282769   PMID:30372567   PMID:30562941   PMID:32531187  


Genomics

Comparative Map Data
Gpm6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,021,775 - 165,172,029 (+)NCBIGRCm39mm39
GRCm38X166,238,943 - 166,389,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,238,911 - 166,388,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X162,676,875 - 162,826,965 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X161,583,077 - 161,733,093 (+)NCBImm8
CeleraX149,417,598 - 149,568,704 (+)NCBICelera
Cytogenetic MapXF5NCBI
GPM6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX13,770,939 - 13,938,638 (-)EnsemblGRCh38hg38GRCh38
GRCh38X13,770,922 - 13,938,713 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X13,789,062 - 13,956,861 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,698,983 - 13,866,752 (-)NCBINCBI36hg18NCBI36
Build 34X13,551,753 - 13,594,971NCBI
CeleraX17,906,144 - 18,072,735 (-)NCBI
Cytogenetic MapXp22.2NCBI
HuRefX11,546,522 - 11,713,553 (-)NCBIHuRef
CHM1_1X13,819,859 - 13,987,377 (-)NCBICHM1_1
Gpm6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X29,604,607 - 29,751,174 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,607,075 - 29,648,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,997,897 - 30,145,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,746,584 - 48,788,414 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X48,800,052 - 48,841,883 (-)NCBI
CeleraX28,432,966 - 28,474,260 (-)NCBICelera
Cytogenetic MapXq13-q14NCBI
Gpm6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,287,026 - 4,432,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,287,203 - 4,432,188 (+)NCBIChiLan1.0ChiLan1.0
GPM6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X13,666,106 - 13,711,964 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,666,192 - 13,711,964 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X6,377,913 - 6,544,826 (-)NCBIMhudiblu_PPA_v0panPan3
GPM6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX10,214,933 - 10,374,837 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X10,214,889 - 10,375,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Gpm6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364703,332,856 - 3,496,178 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPM6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX10,430,281 - 10,643,429 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X10,429,496 - 10,582,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,383,146 - 11,536,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPM6B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,258,386 - 12,429,883 (-)NCBI
Gpm6b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624882220,267 - 374,912 (+)NCBI

Position Markers
Gpm6b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X166,372,648 - 166,372,813UniSTSGRCm38
MGSCv37X162,810,580 - 162,810,745UniSTSGRCm37
CeleraX149,552,211 - 149,552,376UniSTS
Cytogenetic MapXF5UniSTS
cM MapX UniSTS
UniSTS:238110  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X166,385,706 - 166,386,002UniSTSGRCm38
MGSCv37X162,823,638 - 162,823,934UniSTSGRCm37
CeleraX149,565,378 - 149,565,674UniSTS
Cytogenetic MapXF5UniSTS
AI593561  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X166,385,701 - 166,385,834UniSTSGRCm38
MGSCv37X162,823,633 - 162,823,766UniSTSGRCm37
CeleraX149,565,373 - 149,565,506UniSTS
Cytogenetic MapXF5UniSTS
Whitehead/MRC_RHX1946.3UniSTS
RH126813  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X166,254,824 - 166,255,048UniSTSGRCm38
MGSCv37X162,692,756 - 162,692,980UniSTSGRCm37
CeleraX149,433,685 - 149,433,909UniSTS
Cytogenetic MapXF5UniSTS
cM MapX72.0UniSTS
Whitehead/MRC_RHX1946.2UniSTS
px-70g9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X166,389,207 - 166,389,402UniSTSGRCm38
MGSCv37X162,827,139 - 162,827,334UniSTSGRCm37
CeleraX149,568,878 - 149,569,073UniSTS
Cytogenetic MapXF5UniSTS
px-8c5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X166,304,923 - 166,305,048UniSTSGRCm38
MGSCv37X162,742,855 - 162,742,980UniSTSGRCm37
CeleraX149,484,110 - 149,484,235UniSTS
Cytogenetic MapXF5UniSTS
Gpm6b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXF5UniSTS
cM MapX UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX145691384171031299Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX134639291166515599Mouse
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX145691384171031299Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:9720
Count of miRNA genes:904
Interacting mature miRNAs:1327
Transcripts:ENSMUST00000060210, ENSMUST00000112223, ENSMUST00000112224, ENSMUST00000112226, ENSMUST00000112227, ENSMUST00000112228, ENSMUST00000112229, ENSMUST00000112233, ENSMUST00000112235, ENSMUST00000123408, ENSMUST00000129731, ENSMUST00000143263
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF254869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ745381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ155269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S65737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000060210   ⟹   ENSMUSP00000060442
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,238,972 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112223   ⟹   ENSMUSP00000107842
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,692 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112224   ⟹   ENSMUSP00000107843
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,692 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112226   ⟹   ENSMUSP00000107845
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,692 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112227   ⟹   ENSMUSP00000107846
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,692 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112228   ⟹   ENSMUSP00000107847
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,692 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112229   ⟹   ENSMUSP00000107848
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,692 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112233   ⟹   ENSMUSP00000107852
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,238,972 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112235   ⟹   ENSMUSP00000107854
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,238,911 - 166,388,988 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123408   ⟹   ENSMUSP00000134741
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,692 - 166,384,000 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129731
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,842 - 166,373,287 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143263   ⟹   ENSMUSP00000135378
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX166,344,692 - 166,384,000 (+)Ensembl
RefSeq Acc Id: NM_001177955   ⟹   NP_001171426
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,127,549 - 165,172,029 (+)NCBI
GRCm38X166,344,553 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177956   ⟹   NP_001171427
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,127,549 - 165,172,029 (+)NCBI
GRCm38X166,344,553 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177957   ⟹   NP_001171428
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,127,549 - 165,172,029 (+)NCBI
GRCm38X166,344,553 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177958   ⟹   NP_001171429
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,127,549 - 165,172,029 (+)NCBI
GRCm38X166,344,553 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177959   ⟹   NP_001171430
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,127,549 - 165,172,029 (+)NCBI
GRCm38X166,344,553 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177960   ⟹   NP_001171431
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,127,549 - 165,172,029 (+)NCBI
GRCm38X166,344,553 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177961   ⟹   NP_001171432
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,021,939 - 165,172,029 (+)NCBI
GRCm38X166,238,943 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177962   ⟹   NP_001171433
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,021,939 - 165,172,029 (+)NCBI
GRCm38X166,238,943 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023122   ⟹   NP_075611
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,021,939 - 165,172,029 (+)NCBI
GRCm38X166,238,943 - 166,389,033 (+)NCBI
MGSCv37X162,676,875 - 162,826,965 (+)RGD
CeleraX149,417,598 - 149,568,704 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011247784   ⟹   XP_011246086
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,131,740 - 165,172,028 (+)NCBI
GRCm38X166,348,743 - 166,389,032 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017318385   ⟹   XP_017173874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,128,281 - 165,172,028 (+)NCBI
GRCm38X166,348,658 - 166,389,032 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161821   ⟹   XP_036017714
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,021,775 - 165,172,028 (+)NCBI
RefSeq Acc Id: XM_036161822   ⟹   XP_036017715
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,021,911 - 165,172,028 (+)NCBI
RefSeq Acc Id: XM_036161823   ⟹   XP_036017716
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X165,021,804 - 165,172,028 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001171426 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171427 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171428 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171429 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171430 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171431 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171432 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171433 (Get FASTA)   NCBI Sequence Viewer  
  NP_075611 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246086 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173874 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017714 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017715 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017716 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB28351 (Get FASTA)   NCBI Sequence Viewer  
  AAF87987 (Get FASTA)   NCBI Sequence Viewer  
  AAF87988 (Get FASTA)   NCBI Sequence Viewer  
  AAF87989 (Get FASTA)   NCBI Sequence Viewer  
  AAF87990 (Get FASTA)   NCBI Sequence Viewer  
  AAF87991 (Get FASTA)   NCBI Sequence Viewer  
  AAF87992 (Get FASTA)   NCBI Sequence Viewer  
  AAF87993 (Get FASTA)   NCBI Sequence Viewer  
  AAF87994 (Get FASTA)   NCBI Sequence Viewer  
  AAF87995 (Get FASTA)   NCBI Sequence Viewer  
  AAF87996 (Get FASTA)   NCBI Sequence Viewer  
  AAF87997 (Get FASTA)   NCBI Sequence Viewer  
  AAH03912 (Get FASTA)   NCBI Sequence Viewer  
  AAH25165 (Get FASTA)   NCBI Sequence Viewer  
  BAB30309 (Get FASTA)   NCBI Sequence Viewer  
  BAE21354 (Get FASTA)   NCBI Sequence Viewer  
  BAE24453 (Get FASTA)   NCBI Sequence Viewer  
  EDL40733 (Get FASTA)   NCBI Sequence Viewer  
  EDL40734 (Get FASTA)   NCBI Sequence Viewer  
  EDL40735 (Get FASTA)   NCBI Sequence Viewer  
  EDL40736 (Get FASTA)   NCBI Sequence Viewer  
  EDL40737 (Get FASTA)   NCBI Sequence Viewer  
  EDL40738 (Get FASTA)   NCBI Sequence Viewer  
  EDL40739 (Get FASTA)   NCBI Sequence Viewer  
  EDL40740 (Get FASTA)   NCBI Sequence Viewer  
  P35803 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_075611   ⟸   NM_023122
- Peptide Label: isoform 4
- UniProtKB: P35803 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171433   ⟸   NM_001177962
- Peptide Label: isoform 6
- UniProtKB: P35803 (UniProtKB/Swiss-Prot),   Q3V0Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171432   ⟸   NM_001177961
- Peptide Label: isoform 6
- UniProtKB: P35803 (UniProtKB/Swiss-Prot),   Q3V0Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171426   ⟸   NM_001177955
- Peptide Label: isoform 1
- UniProtKB: P35803 (UniProtKB/Swiss-Prot),   A2AEG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171427   ⟸   NM_001177956
- Peptide Label: isoform 2
- UniProtKB: P35803 (UniProtKB/Swiss-Prot),   A2AEG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171428   ⟸   NM_001177957
- Peptide Label: isoform 2
- UniProtKB: P35803 (UniProtKB/Swiss-Prot),   A2AEG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171429   ⟸   NM_001177958
- Peptide Label: isoform 3
- UniProtKB: P35803 (UniProtKB/Swiss-Prot),   Q3US81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171430   ⟸   NM_001177959
- Peptide Label: isoform 5
- UniProtKB: P35803 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171431   ⟸   NM_001177960
- Peptide Label: isoform 5
- UniProtKB: P35803 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246086   ⟸   XM_011247784
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017173874   ⟸   XM_017318385
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000135378   ⟸   ENSMUST00000143263
RefSeq Acc Id: ENSMUSP00000107843   ⟸   ENSMUST00000112224
RefSeq Acc Id: ENSMUSP00000107842   ⟸   ENSMUST00000112223
RefSeq Acc Id: ENSMUSP00000107848   ⟸   ENSMUST00000112229
RefSeq Acc Id: ENSMUSP00000107845   ⟸   ENSMUST00000112226
RefSeq Acc Id: ENSMUSP00000107847   ⟸   ENSMUST00000112228
RefSeq Acc Id: ENSMUSP00000107846   ⟸   ENSMUST00000112227
RefSeq Acc Id: ENSMUSP00000107852   ⟸   ENSMUST00000112233
RefSeq Acc Id: ENSMUSP00000107854   ⟸   ENSMUST00000112235
RefSeq Acc Id: ENSMUSP00000060442   ⟸   ENSMUST00000060210
RefSeq Acc Id: ENSMUSP00000134741   ⟸   ENSMUST00000123408
RefSeq Acc Id: XP_036017714   ⟸   XM_036161821
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036017716   ⟸   XM_036161823
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036017715   ⟸   XM_036161822
- Peptide Label: isoform X3

Promoters
RGD ID:6845799
Promoter ID:MM_KWN:62715
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:ENSMUST00000112233,   ENSMUST00000112235,   ENSMUST00000112236
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X162,677,051 - 162,677,551 (+)MPROMDB
RGD ID:6845816
Promoter ID:MM_KWN:62716
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000073975,   ENSMUST00000112215,   ENSMUST00000112223,   ENSMUST00000112224,   ENSMUST00000112228,   OTTMUST00000046660,   OTTMUST00000046662,   OTTMUST00000046663,   UC009UWJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X162,782,481 - 162,782,981 (+)MPROMDB
RGD ID:13681836
Promoter ID:EPDNEW_M25067
Type:initiation region
Name:Gpm6b_1
Description:Mus musculus glycoprotein m6b , transcript variant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X166,238,980 - 166,239,040EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107672 AgrOrtholog
Ensembl Genes ENSMUSG00000031342 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000060442 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107842 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000107843 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107845 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107846 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000107847 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107848 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000107852 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000107854 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000134741 UniProtKB/TrEMBL
  ENSMUSP00000135378 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000060210 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112223 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000112224 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112226 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112227 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000112228 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112229 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000112233 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112235 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000123408 UniProtKB/TrEMBL
  ENSMUST00000143263 UniProtKB/Swiss-Prot
InterPro Myelin_PLP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myelin_PLP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14758 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107672 ENTREZGENE
NCBI Gene 14758 ENTREZGENE
PANTHER PTHR11683 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Myelin_PLP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpm6b PhenoGen
PRINTS MYELINPLP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MYELIN_PLP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYELIN_PLP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PLP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AEG3 ENTREZGENE, UniProtKB/TrEMBL
  A2AEG6 ENTREZGENE, UniProtKB/TrEMBL
  GPM6B_MOUSE UniProtKB/Swiss-Prot
  H3BIV8_MOUSE UniProtKB/TrEMBL
  P35803 ENTREZGENE
  Q3US81 ENTREZGENE, UniProtKB/TrEMBL
  Q3V0Z9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A2AEG4 UniProtKB/Swiss-Prot
  Q8R3J6 UniProtKB/Swiss-Prot
  Q99L14 UniProtKB/Swiss-Prot
  Q9D4F5 UniProtKB/Swiss-Prot
  Q9JHG9 UniProtKB/Swiss-Prot
  Q9JHI1 UniProtKB/Swiss-Prot
  Q9JHK2 UniProtKB/Swiss-Prot
  Q9JI62 UniProtKB/Swiss-Prot
  Q9JI63 UniProtKB/Swiss-Prot
  Q9JI64 UniProtKB/Swiss-Prot
  Q9JI65 UniProtKB/Swiss-Prot