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ONTOLOGY REPORT - ANNOTATIONS


Term:collagen fibril organization
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Accession:GO:0030199 term browser browse the term
Definition:Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix.
Synonyms:exact_synonym: collagen fibril organisation;   fibrillar collagen organization
 never_in_taxon: NCBITaxon:4751 ! Fungi



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collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856465 (MGI:2664273|PMID:3070812)
Ensembl
RGD
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 1:132,981,034...133,044,416
Ensembl chr 1:132,981,582...133,043,627
JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 involved_in ISO MGI:1347346|MGI:2146046 (MGI:6193362|PMID:29618652) RGD PMID:29618652 MGI:6193362 NCBI chr 2:60,032,873...60,327,629
Ensembl chr 2:60,032,873...60,327,629
JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 acts_upstream_of_or_within ISO (MGI:2158963|PMID:11741898) RGD PMID:11741898 MGI:2158963 NCBI chr20:29,143,029...29,219,846
Ensembl chr20:29,144,354...29,219,866
JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 acts_upstream_of_or_within ISO MGI:2388161 (MGI:3621082|PMID:16556917) RGD PMID:16556917 MGI:3621082 NCBI chr10:34,920,996...35,126,465
Ensembl chr10:34,921,049...35,123,821
JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 involved_in ISO MGI:1347346|MGI:2146046 (MGI:6193362|PMID:29618652) RGD PMID:29618652 MGI:6193362 NCBI chr 8:90,704,727...90,744,331
Ensembl chr 8:90,704,727...90,744,328
JBrowse link
G Anxa2 annexin A2 acts_upstream_of_or_within ISO MGI:3028929 (MGI:3027337|PMID:14702107) RGD PMID:14702107 MGI:3027337 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856097|MGI:1856101|MGI:1856102|MGI:3588774 (MGI:3616522|PMID:16338116), (MGI:53875|PMID:4808708), (MGI:54357|PMID:20889), (MGI:83737|PMID:8096378), (MGI:83811|PMID:8895222) RGD PMID:20889 PMID:4808708 PMID:8096378 PMID:8895222 PMID:16338116 MGI:3616522 MGI:53875 MGI:54357 MGI:83737 MGI:83811 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within TAS
ISO
MGI:1856399|MGI:88457 (MGI:2664273|PMID:3070812), (MGI:3694610|PMID:17029294), (MGI:3766851|PMID:17683922), (MGI:5014156|PMID:21467034), (MGI:53676|PMID:4100752), (MGI:53732|PMID:4110409), (MGI:70833|PMID:7859283) RGD PMID:3070812 PMID:4100752 PMID:4110409 PMID:7859283 PMID:17029294 More... MGI:2664273 MGI:3694610 MGI:3766851 MGI:5014156 MGI:53676 MGI:53732 MGI:70833, RGD:1300046 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Col11a2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:9188673)
MGI:2154689 (MGI:1350441|PMID:10581026), (MGI:2151300|PMID:11668593)
PMID:21873635
RGD PMID:9188673 PMID:10581026 PMID:11668593 PMID:21873635 MGI:1350441 MGI:2151300, RGD:13792537 NCBI chr20:4,786,929...4,816,598
Ensembl chr20:4,786,929...4,815,985
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:29,783,965...29,924,116
Ensembl chr20:29,783,965...29,924,032
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain acts_upstream_of_or_within ISO MGI:3846440 (MGI:5444801|PMID:22906538) RGD PMID:22906538 MGI:5444801 NCBI chr 7:86,722,093...86,937,215
Ensembl chr 7:86,722,094...86,937,214
JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in ISO (PMID:14976317), (PMID:15095409), (PMID:17211858), (PMID:18375391) RGD PMID:14976317 PMID:15095409 PMID:17211858 PMID:18375391 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col1a2 collagen type I alpha 2 chain involved_in ISO
IEA
(PMID:17211858), (PMID:18375391)
GO_REF:0000107
RGD
Ensembl
PMID:17211858 PMID:18375391 GO_REF:0000107 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:1429602)
PMID:21873635
MGI:1857275|MGI:2152978 (MGI:1315157|PMID:9832566), (MGI:1327515|PMID:9915573), (MGI:2664273|PMID:3070812), (MGI:3618042|PMID:11171689), (MGI:55057|PMID:7276808), (MGI:77563|PMID:7590256), (MGI:84914|PMID:8989518), (MGI:85592|PMID:9022054)
RGD PMID:1429602 PMID:3070812 PMID:7276808 PMID:7590256 PMID:8989518 More... MGI:1315157 MGI:1327515 MGI:2664273 MGI:3618042 MGI:55057 MGI:77563 MGI:84914 MGI:85592, RGD:13792537 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in
acts_upstream_of_or_within
ISO (PMID:7546986), (PMID:9036918)
MGI:1857431|MGI:1860700 (MGI:5430873|PMID:20587693), (MGI:5605226|PMID:24820199), (MGI:6279612|PMID:29551664), (MGI:6405577|PMID:31655293)
MGI:1857431 (MGI:86656|PMID:9050868)
RGD PMID:7546986 PMID:9036918 PMID:9050868 PMID:20587693 PMID:24820199 More... MGI:5430873 MGI:5605226 MGI:6279612 MGI:6405577 MGI:86656 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547
JBrowse link
G Col5a1 collagen type V alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:3664598|MGI:88446 (MGI:3663234|PMID:16492673), (MGI:3664596|PMID:15383546), (MGI:3694610|PMID:17029294), (MGI:5014156|PMID:21467034)
PMID:21873635
(PMID:11278977), (PMID:15095409), (PMID:9683580)
Ensembl
RGD
PMID:9683580 PMID:11278977 PMID:15095409 PMID:15383546 PMID:16492673 More... GO_REF:0000107 MGI:3663234 MGI:3664596 MGI:3694610 MGI:5014156, RGD:13792537 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:9425231)
(MGI:3047505|PMID:15199158)
RGD PMID:9425231 PMID:15199158 MGI:3047505 NCBI chr 9:47,448,736...47,598,396
Ensembl chr 9:47,448,736...47,598,154
JBrowse link
G Comp cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180787|MGI:5550566 (MGI:4412116|PMID:19808781), (MGI:5568656|PMID:24312420), (MGI:5922181|PMID:26746240)
Ensembl
RGD
PMID:19808781 PMID:24312420 PMID:26746240 GO_REF:0000107 MGI:4412116 MGI:5568656 MGI:5922181 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,047,207...19,055,845
JBrowse link
G Crtap cartilage associated protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,047,929...114,067,648
Ensembl chr 8:114,047,933...114,067,631
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5544856|PMID:23979599)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23979599 GO_REF:0000024 GO_REF:0000107 MGI:5544856 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 involved_in ISO (MGI:5318020|PMID:19900459) RGD PMID:19900459 MGI:5318020 NCBI chr13:82,193,623...82,318,229
Ensembl chr13:82,195,463...82,317,363
JBrowse link
G Dpt dermatopontin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2387341 (MGI:2386368|PMID:12230512), (MGI:3655897|PMID:16877395)
RGD PMID:12230512 PMID:16877395 PMID:21873635 MGI:2386368 MGI:3655897, RGD:13792537 NCBI chr13:77,122,926...77,151,646
Ensembl chr13:77,123,115...77,151,639
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:6406768|PMID:19850926) RGD PMID:19850926 MGI:6406768 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO MGI:5432211 (MGI:5585367|PMID:24777781), (MGI:6114458|PMID:28206698) RGD PMID:24777781 PMID:28206698 MGI:5585367 MGI:6114458 NCBI chr10:85,345,434...85,357,998
Ensembl chr10:85,346,126...85,427,330
JBrowse link
G Fmod fibromodulin involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr13:45,493,517...45,504,134
Ensembl chr13:45,493,517...45,504,133
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1856705 (MGI:1355577|PMID:10767326) RGD PMID:10767326 MGI:1355577 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (MGI:1355577|PMID:10767326) RGD PMID:10767326 MGI:1355577 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463 (MGI:1353150|PMID:10660670) RGD PMID:10660670 MGI:1353150 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899
JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
IMP
(MGI:5766417|PMID:26700732)
MGI:3610732 (MGI:3604822|PMID:16192629), (MGI:5766417|PMID:26700732)
PMID:21873635
RGD PMID:16192629 PMID:26700732 PMID:16804742 PMID:21873635 PMID:16432278 MGI:3604822 MGI:5766417, RGD:1600668, RGD:13792537, RGD:1600669 NCBI chr18:45,964,311...46,041,477
Ensembl chr18:45,967,343...46,041,477
JBrowse link
G Loxl1 lysyl oxidase-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:58,692,592...58,716,356
Ensembl chr 8:58,692,593...58,716,356
JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000107
(PMID:21835952)
PMID:21873635
UniProt
Ensembl
RGD
PMID:21835952 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr15:44,683,449...44,773,067
Ensembl chr15:44,683,880...44,773,067
JBrowse link
G Loxl3 lysyl oxidase-like 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,540,640...115,556,958
Ensembl chr 4:115,540,685...115,557,466
JBrowse link
G Loxl4 lysyl oxidase-like 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:241,396,183...241,416,385
Ensembl chr 1:241,397,983...241,416,322
JBrowse link
G Lum lumican involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:32,358,990...32,365,794
Ensembl chr 7:32,358,614...32,365,793
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 acts_upstream_of_or_within ISO MGI:5007248 (MGI:5008683|PMID:21606205) RGD PMID:21606205 MGI:5008683 NCBI chr13:94,970,421...95,012,071
Ensembl chr13:94,970,424...95,011,972
JBrowse link
G Mkx mohawk homeobox acts_upstream_of_or_within ISO MGI:5287572 (MGI:5287220|PMID:20696843) RGD PMID:20696843 MGI:5287220 NCBI chr17:55,077,073...55,156,877
Ensembl chr17:55,077,540...55,156,124
JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within ISO MGI:2387934 (MGI:3822602|PMID:18622425) RGD PMID:18622425 MGI:3822602 NCBI chr20:12,730,846...12,739,629
Ensembl chr20:12,730,836...12,739,628
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:1857444 (MGI:1339276|PMID:10383727)
GO_REF:0000107
HGNC-UCL
RGD
Ensembl
PMID:10383727 GO_REF:0000024 GO_REF:0000107 MGI:1339276 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Optc opticin involved_in ISO
IBA
(MGI:6148629|PMID:29323130)
PMID:21873635
RGD PMID:29323130 PMID:21873635 MGI:6148629, RGD:13792537 NCBI chr13:45,353,954...45,368,254
Ensembl chr13:45,355,148...45,365,237
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 acts_upstream_of_or_within ISO MGI:4830452 (MGI:4830073|PMID:20363744) RGD PMID:20363744 MGI:4830073 NCBI chr 5:132,841,868...132,856,664
Ensembl chr 5:132,841,928...132,856,659
JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 involved_in IBA
IEA
ISO
ISS
PMID:21873635
GO_REF:0000107
(MGI:5779580|PMID:27119146)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27119146 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5779580, RGD:13792537 NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093
JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 acts_upstream_of_or_within ISO MGI:3706369 (MGI:3706231|PMID:17135260) RGD PMID:17135260 MGI:3706231 NCBI chr20:27,302,046...27,352,098
Ensembl chr20:27,302,141...27,352,786
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO MGI:3620600|MGI:3620603 (MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:3618677 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960
JBrowse link
G Pxdn peroxidasin involved_in ISO (PMID:22842973) RGD PMID:22842973 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:4413438|PMID:18802027) RGD PMID:18802027 MGI:4413438 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Serpinf2 serpin family F member 2 involved_in ISO (MGI:5306295|PMID:17958745) RGD PMID:17958745 MGI:5306295 NCBI chr10:60,272,400...60,280,506
Ensembl chr10:60,272,400...60,281,243
JBrowse link
G Serpinh1 serpin family H member 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:2176070|MGI:2385994|MGI:5505265 (MGI:1890100|PMID:10995453), (MGI:5494537|PMID:22492985)
GO_REF:0000107
RGD
Ensembl
PMID:10995453 PMID:22492985 PMID:21873635 GO_REF:0000107 MGI:1890100 MGI:5494537, RGD:13792537 NCBI chr 1:153,643,500...153,650,853
Ensembl chr 1:153,643,510...153,650,801
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:3664776 (MGI:3839034|PMID:19079247) RGD PMID:19079247 MGI:3839034 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:16891397)
UniProt
RGD
PMID:16891397 GO_REF:0000024 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO MGI:2388050 (MGI:3588906|PMID:15993878) RGD PMID:15993878 MGI:3588906 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
G Tnxb tenascin XB acts_upstream_of_or_within ISO MGI:2181283|MGI:3053791 (MGI:2177884|PMID:11925569), (MGI:3052887|PMID:15194424) RGD PMID:11925569 PMID:15194424 MGI:2177884 MGI:3052887
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog acts_upstream_of_or_within ISO MGI:3699244|MGI:5816979 (MGI:5804716|PMID:27435297) RGD PMID:27435297 MGI:5804716 NCBI chr 6:106,888,284...106,913,139
Ensembl chr 6:106,888,284...106,913,117
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated acts_upstream_of_or_within ISO MGI:3699244|MGI:5770088 (MGI:5804716|PMID:27435297) RGD PMID:27435297 MGI:5804716 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chadl chondroadherin-like involved_in ISO (PMID:25451920) RGD PMID:25451920 NCBI chr 7:113,205,323...113,218,678
Ensembl chr 7:113,210,748...113,217,272
JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:5605894 NCBI chr 6:25,455,974...25,463,736
Ensembl chr 6:25,445,298...25,463,698
JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 involved_in ISO (PMID:27402836) RGD PMID:27402836 NCBI chr16:18,319,796...18,332,106
Ensembl chr16:18,319,795...18,332,106
JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5660411|PMID:26178373), (MGI:5695689|PMID:26220971), (MGI:6158865|PMID:26711913) RGD PMID:26178373 PMID:26220971 PMID:26711913 MGI:5660411 MGI:5695689 MGI:6158865 NCBI chr 1:202,781,692...202,789,784
Ensembl chr 1:202,781,665...202,789,414
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:6112863|PMID:29304157)
Ensembl
RGD
PMID:29304157 GO_REF:0000107 MGI:6112863 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
JBrowse link
G Tnxb tenascin XB involved_in ISO (PMID:17033827) RGD PMID:17033827
regulation of collagen fibril organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp1 AE binding protein 1 involved_in ISO
IEA
ISS
(PMID:29606302)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:29606302 GO_REF:0000024 GO_REF:0000107 NCBI chr14:80,738,800...80,748,878
Ensembl chr14:80,738,892...80,748,877
JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in ISO (MGI:5776647|PMID:26690653) RGD PMID:26690653 MGI:5776647 NCBI chr 1:202,781,692...202,789,784
Ensembl chr 1:202,781,665...202,789,414
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component organization 6309
          supramolecular fiber organization 821
            collagen fibril organization 60
              negative regulation of collagen fibril organization 2
              positive regulation of collagen fibril organization 4
              regulation of collagen fibril organization + 7
Path 2
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  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component organization 6309
          extracellular structure organization 321
            extracellular matrix organization 320
              collagen fibril organization 60
                negative regulation of collagen fibril organization 2
                positive regulation of collagen fibril organization 4
                regulation of collagen fibril organization + 7
paths to the root