Lamc1 (laminin, gamma 1) - Rat Genome Database

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Gene: Lamc1 (laminin, gamma 1) Mus musculus
Analyze
Symbol: Lamc1
Name: laminin, gamma 1
RGD ID: 1318554
MGI Page MGI
Description: Enables glycosphingolipid binding activity. Involved in several processes, including hair cell differentiation; hair follicle cell proliferation; and hair follicle morphogenesis. Acts upstream of or within neuron projection development. Located in basement membrane. Part of laminin-10 complex. Is active in neuromuscular junction and synaptic cleft. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human LAMC1 (laminin subunit gamma 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Lam; Lamb2; laminin B2 chain; laminin subunit gamma-1; laminin-1 subunit gamma; laminin-10 subunit gamma; laminin-11 subunit gamma; laminin-2 subunit gamma; laminin-3 subunit gamma; laminin-4 subunit gamma; laminin-6 subunit gamma; laminin-7 subunit gamma; laminin-8 subunit gamma; laminin-9 subunit gamma; S-LAM gamma; S-laminin subunit gamma
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15950  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,094,668 - 153,208,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,094,668 - 153,208,532 (-)EnsemblGRCm39 Ensembl
GRCm381153,218,922 - 153,332,786 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,218,922 - 153,332,786 (-)EnsemblGRCm38mm10GRCm38
MGSCv371155,066,052 - 155,179,916 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,981,140 - 155,095,004 (-)NCBIMGSCv36mm8
Celera1155,640,123 - 155,755,639 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map165.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP)
2-butoxyethanol  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (EXP,ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (EXP)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-D-glucosamine  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bromochloroacetic acid  (EXP)
butyric acid  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenamidone  (EXP)
genistein  (ISO)
glucose  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-serine  (ISO)
lithium chloride  (ISO)
menadione  (ISO)
mercury atom  (EXP)
mercury(0)  (EXP)
methotrexate  (ISO)
mitoxantrone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP)
phenylephrine  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
potassium chromate  (ISO)
profenofos  (ISO)
progesterone  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
sulindac sulfide  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
theophylline  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axon radial sorting  (IAGP)
abnormal basement membrane morphology  (IAGP)
abnormal brain development  (IAGP)
abnormal bronchus morphology  (IAGP)
abnormal Cajal-Retzius cell morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal cortical plate morphology  (IAGP)
abnormal dorsal spinal root morphology  (IAGP)
abnormal epididymis morphology  (IAGP)
abnormal kidney development  (IAGP)
abnormal lung saccule morphology  (IAGP)
abnormal meninges morphology  (IAGP)
abnormal Mullerian duct morphology  (IAGP)
abnormal myelination  (IAGP)
abnormal neural tube closure  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal peripheral nervous system regeneration  (IAGP)
abnormal primitive endoderm morphology  (IAGP)
abnormal quadriceps morphology  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal renal glomerular capsule morphology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal reproductive system morphology  (IAGP)
abnormal response to injury  (IAGP)
abnormal retina morphology  (IAGP)
abnormal Schwann cell morphology  (IAGP)
abnormal sciatic nerve morphology  (IAGP)
abnormal ureter morphology  (IAGP)
abnormal ventral spinal root morphology  (IAGP)
abnormal Wolffian duct morphology  (IAGP)
absent kidney  (IAGP)
absent metanephros  (IAGP)
absent seminal vesicle  (IAGP)
absent ureteric bud  (IAGP)
absent uterus  (IAGP)
absent vas deferens  (IAGP)
absent visceral yolk sac  (IAGP)
centrally nucleated skeletal muscle fibers  (IAGP)
decreased body size  (IAGP)
decreased brain size  (IAGP)
decreased fetal size  (IAGP)
decreased renal glomerulus number  (IAGP)
decreased skeletal muscle fiber diameter  (IAGP)
decreased skeletal muscle mass  (IAGP)
demyelination  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
exencephaly  (IAGP)
forelimb paralysis  (IAGP)
hindlimb paralysis  (IAGP)
hydronephrosis  (IAGP)
increased Schwann cell number  (IAGP)
intracranial hemorrhage  (IAGP)
kidney cyst  (IAGP)
kidney failure  (IAGP)
kidney microaneurysm  (IAGP)
limb grasping  (IAGP)
muscular atrophy  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
paraparesis  (IAGP)
single kidney  (IAGP)
skeletal muscle fiber atrophy  (IAGP)
small lung  (IAGP)
thick lung-associated mesenchyme  (IAGP)
thin cerebral cortex  (IAGP)
tremors  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1292752   PMID:1353694   PMID:1383241   PMID:1617216   PMID:1675982   PMID:1678389   PMID:1725162   PMID:1907584   PMID:2071146   PMID:2088723   PMID:2100263   PMID:2119632  
PMID:2267633   PMID:2498841   PMID:2567701   PMID:2574151   PMID:2787796   PMID:2836421   PMID:2882954   PMID:2993224   PMID:3109910   PMID:3167041   PMID:3384439   PMID:3680290  
PMID:3794389   PMID:6209134   PMID:7510707   PMID:7516699   PMID:7544312   PMID:7669546   PMID:7670489   PMID:7851641   PMID:7882992   PMID:8034675   PMID:8055931   PMID:8153091  
PMID:8286607   PMID:8359228   PMID:8562707   PMID:8589528   PMID:8613743   PMID:8614642   PMID:8648630   PMID:8648631   PMID:8719886   PMID:8722691   PMID:8725284   PMID:8812145  
PMID:8872465   PMID:9019243   PMID:9034910   PMID:9043083   PMID:9264260   PMID:9291468   PMID:9299121   PMID:9382709   PMID:9390664   PMID:9396756   PMID:9405421   PMID:9489770  
PMID:9506922   PMID:9603432   PMID:9719032   PMID:9827803   PMID:9833687   PMID:9852162   PMID:9885251   PMID:9927670   PMID:9988277   PMID:10349636   PMID:10373331   PMID:10481268  
PMID:10518496   PMID:10613847   PMID:10625553   PMID:10720432   PMID:10922068   PMID:10974008   PMID:11042159   PMID:11044609   PMID:11076861   PMID:11217851   PMID:11431694   PMID:11784026  
PMID:11827796   PMID:11969289   PMID:12015298   PMID:12051813   PMID:12115247   PMID:12122064   PMID:12183685   PMID:12243745   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12571105  
PMID:12682087   PMID:12702769   PMID:12743034   PMID:12820173   PMID:12904583   PMID:12921739   PMID:12931195   PMID:14610273   PMID:14618389   PMID:14619418   PMID:14638863   PMID:14681479  
PMID:14730302   PMID:14998921   PMID:15102706   PMID:15183724   PMID:15377789   PMID:15572035   PMID:15623520   PMID:15728558   PMID:15824137   PMID:15872093   PMID:15878328   PMID:15895400  
PMID:16024816   PMID:16100707   PMID:16141072   PMID:16141073   PMID:16319112   PMID:16498405   PMID:16554364   PMID:16602821   PMID:16750824   PMID:16873583   PMID:16880404   PMID:16981854  
PMID:17462874   PMID:17517882   PMID:17588941   PMID:17601529   PMID:17690109   PMID:17942732   PMID:18287559   PMID:18356808   PMID:18448648   PMID:18590826   PMID:18757743   PMID:18799693  
PMID:18927478   PMID:19053061   PMID:19074617   PMID:19114596   PMID:19118221   PMID:19118544   PMID:19193855   PMID:19295124   PMID:19416897   PMID:19733164   PMID:20566382   PMID:20731416  
PMID:20830809   PMID:20876210   PMID:20939100   PMID:21084308   PMID:21172822   PMID:21311558   PMID:21335239   PMID:21524702   PMID:21677750   PMID:21873635   PMID:21900571   PMID:21903675  
PMID:21983115   PMID:22083510   PMID:22159717   PMID:22222602   PMID:22613833   PMID:22688677   PMID:22767514   PMID:22911573   PMID:22911783   PMID:23041440   PMID:23091646   PMID:23145988  
PMID:23472759   PMID:23529140   PMID:23857767   PMID:23948589   PMID:24006456   PMID:24300951   PMID:24457600   PMID:24583950   PMID:25216704   PMID:25387007   PMID:26465331   PMID:26552887  
PMID:26555376   PMID:27068110   PMID:27138650   PMID:27234308   PMID:27371534   PMID:27619726   PMID:27808256   PMID:27901020   PMID:28071719   PMID:28634551   PMID:28636612   PMID:30273664  
PMID:30379609   PMID:30456378   PMID:30550785   PMID:30579834   PMID:31323030   PMID:31848396   PMID:31937556   PMID:32325033   PMID:32439764   PMID:32582689   PMID:32673396   PMID:32948785  
PMID:33775822   PMID:34189436   PMID:34323105   PMID:34908109   PMID:35008625   PMID:35121993   PMID:36007682   PMID:36350252  


Genomics

Comparative Map Data
Lamc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,094,668 - 153,208,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,094,668 - 153,208,532 (-)EnsemblGRCm39 Ensembl
GRCm381153,218,922 - 153,332,786 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,218,922 - 153,332,786 (-)EnsemblGRCm38mm10GRCm38
MGSCv371155,066,052 - 155,179,916 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,981,140 - 155,095,004 (-)NCBIMGSCv36mm8
Celera1155,640,123 - 155,755,639 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map165.3NCBI
LAMC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381183,023,420 - 183,145,592 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1183,023,420 - 183,145,592 (+)EnsemblGRCh38hg38GRCh38
GRCh371182,992,555 - 183,114,727 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361181,259,218 - 181,381,350 (+)NCBINCBI36Build 36hg18NCBI36
Build 341179,724,209 - 179,846,384NCBI
Celera1156,103,698 - 156,225,839 (+)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1154,228,644 - 154,350,771 (+)NCBIHuRef
CHM1_11184,415,719 - 184,537,861 (+)NCBICHM1_1
T2T-CHM13v2.01182,382,573 - 182,504,736 (+)NCBIT2T-CHM13v2.0
Lamc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21365,374,372 - 65,501,492 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1365,374,372 - 65,501,492 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1367,978,376 - 68,104,929 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01369,265,739 - 69,392,805 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01366,517,058 - 66,644,103 (-)NCBIRnor_WKY
Rnor_6.01370,656,727 - 70,783,515 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1370,658,707 - 70,783,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01375,617,972 - 75,749,359 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41368,241,453 - 68,369,419 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11368,256,660 - 68,268,487 (-)NCBI
Celera1365,279,355 - 65,406,336 (-)NCBICelera
Cytogenetic Map13q21NCBI
Lamc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540621,863,836 - 21,992,199 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540621,863,836 - 21,990,161 (+)NCBIChiLan1.0ChiLan1.0
LAMC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11162,700,704 - 162,822,534 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1162,700,704 - 162,822,534 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01158,541,635 - 158,663,836 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LAMC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1716,406,421 - 16,528,372 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl716,404,495 - 16,526,000 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha715,992,748 - 16,114,168 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0716,136,951 - 16,259,344 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl716,136,951 - 16,257,388 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1716,047,760 - 16,168,747 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0716,156,304 - 16,277,740 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0716,286,773 - 16,408,562 (+)NCBIUU_Cfam_GSD_1.0
Lamc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934488,826,740 - 88,936,435 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364816,673,488 - 6,783,191 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364816,675,620 - 6,783,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9124,283,224 - 124,405,964 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19124,283,668 - 124,405,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29136,545,710 - 136,668,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12546,233,409 - 46,354,060 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2546,231,780 - 46,353,557 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605547,451,170 - 47,571,755 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481410,570,356 - 10,701,977 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481410,572,026 - 10,701,805 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1769
Count of miRNA genes:703
Interacting mature miRNAs:875
Transcripts:ENSMUST00000027752, ENSMUST00000159251, ENSMUST00000160515, ENSMUST00000161744, ENSMUST00000163011
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
1301135Pas8_mpulmonary adenoma susceptibility 8 (mouse)Not determined1147125258158233272Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
13452392Ity3a_mimmunity to S. typhimurium 3a (mouse)1149028612154228616Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
12903996Cfq5_mconditioned fear QTL 5 (mouse)1150606337159307464Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse

Markers in Region
J02930  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381153,220,255 - 153,220,343UniSTSGRCm38
MGSCv371155,067,385 - 155,067,473UniSTSGRCm37
Celera1155,641,456 - 155,641,544UniSTS
Cytogenetic Map1G3UniSTS
cM Map181.1UniSTS
Whitehead/MRC_RH11985.61UniSTS
D1Mit43  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381153,334,204 - 153,334,348UniSTSGRCm38
MGSCv371155,181,334 - 155,181,478UniSTSGRCm37
Celera1155,757,057 - 155,757,203UniSTS
Cytogenetic Map1G3UniSTS
cM Map176.0UniSTS
Whitehead Genetic179.8UniSTS
Whitehead/MRC_RH11978.12UniSTS
Whitehead_YAC1 UniSTS
Lamc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1G3UniSTS
cM Map181.1UniSTS
cM Map181.1UniSTS
Lamc1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1G3UniSTS
cM Map181.1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000027752   ⟹   ENSMUSP00000027752
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,094,668 - 153,208,532 (-)Ensembl
GRCm38.p6 Ensembl1153,218,922 - 153,332,786 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159251
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,124,363 - 153,126,207 (-)Ensembl
GRCm38.p6 Ensembl1153,248,617 - 153,250,461 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160515
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,104,507 - 153,105,164 (-)Ensembl
GRCm38.p6 Ensembl1153,228,761 - 153,229,418 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161744   ⟹   ENSMUSP00000124662
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,094,668 - 153,104,890 (-)Ensembl
GRCm38.p6 Ensembl1153,218,922 - 153,229,144 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163011   ⟹   ENSMUSP00000124216
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1153,104,561 - 153,115,072 (-)Ensembl
GRCm38.p6 Ensembl1153,228,815 - 153,239,326 (-)Ensembl
RefSeq Acc Id: NM_010683   ⟹   NP_034813
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391153,094,668 - 153,208,532 (-)NCBI
GRCm381153,218,922 - 153,332,786 (-)ENTREZGENE
MGSCv371155,066,052 - 155,179,916 (-)RGD
Celera1155,640,123 - 155,755,639 (-)RGD
cM Map1 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034813   ⟸   NM_010683
- Peptide Label: precursor
- UniProtKB: F8VQJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000027752   ⟸   ENSMUST00000027752
RefSeq Acc Id: ENSMUSP00000124216   ⟸   ENSMUST00000163011
RefSeq Acc Id: ENSMUSP00000124662   ⟸   ENSMUST00000161744
Protein Domains
Laminin EGF-like   Laminin IV type A   Laminin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P02468-F1-model_v2 AlphaFold P02468 1-1607 view protein structure

Promoters
RGD ID:6875258
Promoter ID:EPDNEW_M1080
Type:initiation region
Name:Lamc1_1
Description:Mus musculus laminin, gamma 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381153,332,742 - 153,332,802EPDNEW
RGD ID:6817999
Promoter ID:MM_KWN:2439
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000076767,   OTTMUST00000076768
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361155,075,816 - 155,076,316 (-)MPROMDB
RGD ID:6817998
Promoter ID:MM_KWN:2440
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000076766
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361155,087,201 - 155,087,701 (-)MPROMDB
RGD ID:6817997
Promoter ID:MM_KWN:2441
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000076765
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361155,097,826 - 155,098,326 (-)MPROMDB
RGD ID:6817995
Promoter ID:MM_KWN:2443
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_010683
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361155,179,451 - 155,180,607 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99914 AgrOrtholog
Ensembl Genes ENSMUSG00000026478 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000027752 ENTREZGENE
  ENSMUSP00000027752.9 UniProtKB/TrEMBL
  ENSMUSP00000124216.2 UniProtKB/TrEMBL
  ENSMUSP00000124662.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027752 ENTREZGENE
  ENSMUST00000027752.15 UniProtKB/TrEMBL
  ENSMUST00000161744.2 UniProtKB/TrEMBL
  ENSMUST00000163011.2 UniProtKB/TrEMBL
Gene3D-CATH Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_IV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:226519 UniProtKB/TrEMBL
MGD MGI:99914 ENTREZGENE
NCBI Gene 226519 ENTREZGENE
PANTHER LAMININ SUBUNIT GAMMA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Laminin_B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lamc1 PhenoGen
PRINTS EGFLAMININ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_LAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMININ_IVA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_Lam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LamB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LamNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tropomyosin UniProtKB/TrEMBL
UniProt F6SFQ3_MOUSE UniProtKB/TrEMBL
  F6TLW1_MOUSE UniProtKB/TrEMBL
  F8VQJ3 ENTREZGENE, UniProtKB/TrEMBL
  LAMC1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TRH4_MOUSE UniProtKB/TrEMBL
  Q3UFZ9_MOUSE UniProtKB/TrEMBL
  Q3UNG0_MOUSE UniProtKB/TrEMBL
  Q3URV4_MOUSE UniProtKB/TrEMBL
  Q6PHM1_MOUSE UniProtKB/TrEMBL