Col3a1 (collagen, type III, alpha 1) - Rat Genome Database

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Gene: Col3a1 (collagen, type III, alpha 1) Mus musculus
Analyze
Symbol: Col3a1
Name: collagen, type III, alpha 1
RGD ID: 732584
MGI Page MGI
Description: Enables SMAD binding activity. Involved in several processes, including extracellular matrix organization; neurogenesis; and skeletal system development. Acts upstream of or within blood vessel development and cellular response to amino acid stimulus. Located in extracellular matrix. Part of collagen type III trimer. Is expressed in several structures, including central nervous system; embryo mesenchyme; exocrine system; genitourinary system; and heart and pericardium. Used to study systemic scleroderma and vascular type Ehlers-Danlos syndrome. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome; Ehlers-Danlos syndrome hypermobility type; end stage renal disease; and vascular type Ehlers-Danlos syndrome. Orthologous to human COL3A1 (collagen type III alpha 1 chain).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AW550625; Col3; Col3a-1; collagen alpha-1(III) chain; KIAA4231; minisatellite 10w detected by probe MMS10; mKIAA4231; MMS10-W; Ms10w; procollagen, type III, alpha 1; Tsk; Tsk-; Tsk-2; Tsk2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18395  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39145,350,698 - 45,388,866 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl145,350,698 - 45,388,866 (+)EnsemblGRCm39 Ensembl
GRCm38145,311,538 - 45,349,706 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,311,538 - 45,349,706 (+)EnsemblGRCm38mm10GRCm38
MGSCv37145,368,383 - 45,406,551 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36145,256,192 - 45,293,566 (+)NCBIMGSCv36mm8
Celera145,612,466 - 45,650,861 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Acute Otitis Media  (ISO)
alcoholic liver cirrhosis  (ISO)
Aneurysm  (ISO)
aortic aneurysm  (ISO)
aortic disease  (ISO)
aortic valve insufficiency  (ISO)
ARTERIAL DISSECTION  (ISO)
bladder neck obstruction  (ISO)
Cardiac Fibrosis  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
connective tissue disease  (ISO)
Contracture  (ISO)
Disproportionate Tall Stature  (ISO)
Ehlers-Danlos syndrome  (IAGP,ISO)
Ehlers-Danlos syndrome classic type 1  (ISO)
Ehlers-Danlos syndrome hypermobility type  (ISO)
Ehlers-Danlos Syndrome Type 4  (ISO)
end stage renal disease  (ISO)
endomyocardial fibrosis  (ISO)
epilepsy  (ISO)
Experimental Liver Cirrhosis  (ISO)
extrahepatic cholestasis  (ISO)
facioscapulohumeral muscular dystrophy  (ISO)
Familial Thoracic Aortic Aneurysm 1  (ISO)
Familial Thoracic Aortic Aneurysm 2  (ISO)
Fibrosis  (ISO)
genetic disease  (ISO)
glomerulosclerosis  (ISO)
hereditary spastic paraplegia 4  (ISO)
Hypercholesterolemia  (ISO)
hyperglycemia  (ISO)
hyperinsulinism  (ISO)
hypertension  (ISO)
immunodeficiency 31B  (ISO)
Keloid  (ISO)
Kidney Reperfusion Injury  (IEP)
Left Ventricular Hypertrophy  (ISO)
liver cirrhosis  (ISO)
liver disease  (ISO)
Loeys-Dietz syndrome  (ISO)
Lung Reperfusion Injury  (IEP)
Marfan syndrome  (ISO)
Marfanoid Hypermobility Syndrome  (ISO)
Maxillofacial Abnormalities  (ISO)
megacolon  (ISO)
Mycoplasma pneumoniae pneumonia  (ISO)
myocardial infarction  (ISO)
nephrosclerosis  (ISO)
Neurodevelopmental Disorders  (ISO)
obesity  (ISO)
Polymicrogyria with or without Vascular-Type Ehlers-Danlos Syndrome  (ISO)
pulmonary fibrosis  (IEP,ISO)
renal fibrosis  (IEP)
rheumatic heart disease  (ISO)
schizophrenia  (ISO)
steatotic liver disease  (ISO)
systemic scleroderma  (IAGP)
thoracic aortic aneurysm  (ISO)
Transplant Rejection  (ISO)
type 2 diabetes mellitus  (ISO)
ureteral obstruction  (ISO)
vascular type Ehlers-Danlos syndrome  (IAGP,ISO)
Ventral Hernia  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-citrinin  (ISO)
(-)-epigallocatechin 3-gallate  (EXP,ISO)
(-)-selegiline  (EXP)
(1->4)-beta-D-glucan  (EXP)
(R)-lipoic acid  (EXP)
(R)-noradrenaline  (EXP,ISO)
(S)-colchicine  (EXP)
(S)-nicotine  (EXP,ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
2-amino-2-deoxy-D-galactopyranose  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-butoxyethanol  (EXP)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-methylcholanthrene  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
Ac-Ser-Asp-Lys-Pro-OH  (EXP)
acetamide  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
Activin A  (ISO)
adenine  (EXP,ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (EXP,ISO)
aldosterone  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ambroxol  (ISO)
ammonium chloride  (ISO)
amphibole asbestos  (EXP,ISO)
andrographolide  (EXP,ISO)
angiotensin II  (EXP)
anthocyanin  (EXP)
apocynin  (ISO)
arotinoid acid  (ISO)
arsenic acid  (EXP)
arsenite(3-)  (EXP,ISO)
atrazine  (ISO)
azelastine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
berberine  (EXP)
beta-D-glucosamine  (ISO)
bilirubin IXalpha  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (EXP,ISO)
boron nitride  (ISO)
bucladesine  (ISO)
buspirone  (ISO)
C.I. Natural Red 20  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
camostat  (ISO)
Candesartan cilexetil  (ISO)
cannabidiol  (ISO)
cantharidin  (EXP)
capsaicin  (ISO)
captopril  (EXP)
carbon atom  (ISO)
carbon nanotube  (EXP)
carnosine  (EXP)
carvedilol  (ISO)
CGP 52608  (ISO)
CGS-21680  (ISO)
CHIR 99021  (ISO)
chloroprene  (EXP)
choline  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clofibric acid  (ISO)
clorgyline  (EXP)
cobalt dichloride  (EXP)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cortisol  (ISO)
crocidolite asbestos  (EXP,ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
D-glucose  (EXP,ISO)
DDT  (ISO)
Delta(9)-tetrahydrocannabinolic acid  (EXP)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diclofenac  (EXP,ISO)
diethyl malate  (EXP)
diethyl maleate  (EXP)
dimethylarsinic acid  (ISO)
Diosbulbin B  (EXP)
dioxygen  (EXP,ISO)
diprotium oxide  (ISO)
dipyridamole  (ISO)
diquat  (EXP)
disodium selenite  (ISO)
disulfiram  (ISO)
diuron  (ISO)
divanadium pentaoxide  (ISO)
dizocilpine maleate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
EC 3.4.15.1 (peptidyl-dipeptidase A) inhibitor  (ISO)
elemental carbon  (ISO)
emodin  (ISO)
enalapril  (EXP,ISO)
endosulfan  (ISO)
eplerenone  (ISO)
eprosartan  (ISO)
ergosta-4,6,8(14),22-tetraen-3-one  (ISO)
ethanol  (ISO)
excitatory amino acid agonist  (ISO)
fasudil  (EXP)
fenofibrate  (EXP)
fingolimod hydrochloride  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
fumonisin B1  (EXP)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (EXP,ISO)
glyphosate  (EXP)
gold atom  (EXP)
gold(0)  (EXP)
goralatide  (EXP)
griseofulvin  (EXP)
guggulsterone  (EXP)
Honokiol  (EXP)
hydrogen peroxide  (ISO)
Ile(5)-angiotensin II  (EXP)
indometacin  (ISO)
isoprenaline  (EXP,ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-arginine  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-methionine  (EXP)
lamivudine  (ISO)
limonene  (ISO)
linoleic acid  (EXP)
lipoic acid  (EXP)
lipopolysaccharide  (EXP,ISO)
losartan  (EXP,ISO)
manidipine  (ISO)
mercury dibromide  (ISO)
methamphetamine  (EXP,ISO)
methotrexate  (ISO)
methylglyoxal  (EXP)
methylmercury chloride  (ISO)
methylmercury(1+)  (ISO)
methylparaben  (ISO)
methyltestosterone  (ISO)
metoprolol  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (EXP)
monosodium L-glutamate  (EXP)
Morroniside  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-acetyl-1,4-benzoquinone imine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
Nandrolone decanoate  (ISO)
nefazodone  (ISO)
nickel atom  (EXP)
nickel dichloride  (ISO)
nickel sulfate  (EXP)
nicotine  (EXP,ISO)
nimesulide  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
Pachymic acid  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
paricalcitol  (EXP)
Pentoxifylline  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
perindopril  (ISO)
permethrin  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
Plantamajoside  (EXP)
poly(guanylic acid)  (ISO)
potassium dichromate  (EXP,ISO)
progesterone  (EXP)
puerarin  (ISO)
quercetin  (EXP,ISO)
quercitrin  (ISO)
Rebamipide  (ISO)
resveratrol  (EXP,ISO)
rosmarinic acid  (ISO)
rotenone  (ISO)
saralasin  (ISO)
sarin  (ISO)
SB 431542  (ISO)
SCH 23390  (ISO)
serpentine asbestos  (EXP)
Shikonin  (ISO)
silicon atom  (EXP)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium hydroxide  (ISO)
sorafenib  (ISO)
spironolactone  (ISO)
streptozocin  (EXP,ISO)
succimer  (EXP,ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tamoxifen  (EXP,ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
tetramethylpyrazine  (EXP)
tetraphene  (EXP)
tetrathiomolybdate(2-)  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
toxaphene  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
triclosan  (ISO)
triptonide  (EXP)
ursodeoxycholic acid  (ISO)
valproic acid  (EXP,ISO)
valsartan  (EXP)
vancomycin  (EXP)
verapamil  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
water  (ISO)
XAV939  (ISO)
Y-27632  (ISO)
zinc atom  (ISO)
zinc oxide  (EXP)
zinc(0)  (ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The angiotensin type 1 receptor antagonist, eprosartan, attenuates the progression of renal disease in spontaneously hypertensive stroke-prone rats with accelerated hypertension. Abrahamsen CT, etal., J Pharmacol Exp Ther. 2002 Apr;301(1):21-8. doi: 10.1124/jpet.301.1.21.
2. Alterations in chromatin are associated with increases in collagen III expression in aging nephropathy. Abrass CK, etal., Am J Physiol Renal Physiol. 2011 Feb;300(2):F531-9. doi: 10.1152/ajprenal.00237.2010. Epub 2010 Jul 7.
3. ZFP36 protects lungs from intestinal I/R-induced injury and fibrosis through the CREBBP/p53/p21/Bax pathway. Cao Y, etal., Cell Death Dis. 2021 Jul 8;12(7):685. doi: 10.1038/s41419-021-03950-y.
4. High resolution molecular and histological analysis of renal disease progression in ZSF1 fa/faCP rats, a model of type 2 diabetic nephropathy. Dower K, etal., PLoS One. 2017 Jul 26;12(7):e0181861. doi: 10.1371/journal.pone.0181861. eCollection 2017.
5. Epigenetic changes and alteration of Fbn1 and Col3A1 gene expression under hyperglycaemic and hyperinsulinaemic conditions. Gaikwad AB, etal., Biochem J. 2010 Dec 1;432(2):333-41. doi: 10.1042/BJ20100414.
6. Preventing effects of joint contracture by high molecular weight hyaluronan injections in a rat immobilized knee model. Kanazawa K, etal., Int J Clin Exp Pathol. 2015 Apr 1;8(4):3426-40. eCollection 2015.
7. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
8. Middle East Respiratory Syndrome-Coronavirus Infection into Established hDPP4-Transgenic Mice Accelerates Lung Damage Via Activation of the Pro-Inflammatory Response and Pulmonary Fibrosis. Kim J, etal., J Microbiol Biotechnol. 2020 Mar 28;30(3):427-438. doi: 10.4014/jmb.1910.10055.
9. Inheritance of an RNA splicing mutation (G+ 1 IVS20) in the type III procollagen gene (COL3A1) in a family having aortic aneurysms and easy bruisability: phenotypic overlap between familial arterial aneurysms and Ehlers-Danlos syndrome type IV. Kontusaari S, etal., Am J Hum Genet 1990 Jul;47(1):112-20.
10. Blockade of cysteine-rich protein 61 attenuates renal inflammation and fibrosis after ischemic kidney injury. Lai CF, etal., Am J Physiol Renal Physiol. 2014 Sep 1;307(5):F581-92. doi: 10.1152/ajprenal.00670.2013. Epub 2014 Jun 11.
11. Integrative urinary peptidomics in renal transplantation identifies biomarkers for acute rejection. Ling XB, etal., J Am Soc Nephrol. 2010 Apr;21(4):646-53. doi: 10.1681/ASN.2009080876. Epub 2010 Feb 11.
12. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
13. MGDs mouse GO annotations MGD data from the GO Consortium
14. MGD IEA MGD IEA
15. A family with Ehlers-Danlos syndrome type III/articular hypermobility syndrome has a glycine 637 to serine substitution in type III collagen. Narcisi P, etal., Hum Mol Genet. 1994 Sep;3(9):1617-20.
16. The spectrum, management and clinical outcome of Ehlers-Danlos syndrome type IV: a 30-year experience. Oderich GS, etal., J Vasc Surg. 2005 Jul;42(1):98-106.
17. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
18. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
19. Clinical and genetic features of Ehlers-Danlos syndrome type IV, the vascular type. Pepin M, etal., N Engl J Med 2000 Mar 9;342(10):673-80.
20. Distinct sites of renal fibrosis in Crim1 mutant mice arise from multiple cellular origins. Phua YL, etal., J Pathol. 2013 Apr;229(5):685-96. doi: 10.1002/path.4155. Epub 2013 Feb 22.
21. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
22. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
23. Mouse MP Annotation Import Pipeline RGD automated import pipeline
24. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
25. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
26. A 27-bp deletion from one allele of the type III collagen gene (COL3A1) in a large family with Ehlers-Danlos syndrome type IV. Richards AJ, etal., Hum Genet. 1992 Jan;88(3):325-30.
27. Rapamycin attenuates bladder hypertrophy during long-term outlet obstruction in vivo: tissue, matrix and mechanistic insights. Schroder A, etal., J Urol. 2013 Jun;189(6):2377-84. doi: 10.1016/j.juro.2012.12.110. Epub 2013 Jan 9.
28. Haploinsufficiency of the murine Col3a1 locus causes aortic dissection: a novel model of the vascular type of Ehlers-Danlos syndrome. Smith LB, etal., Cardiovasc Res. 2011 Apr 1;90(1):182-90. doi: 10.1093/cvr/cvq356. Epub 2010 Nov 10.
29. Long noncoding RNA H19 controls DUSP5/ERK1/2 axis in cardiac fibroblast proliferation and fibrosis. Tao H, etal., Cardiovasc Pathol. 2016 Sep-Oct;25(5):381-9. doi: 10.1016/j.carpath.2016.05.005. Epub 2016 Jun 2.
30. Decreased hernia recurrence using autologous platelet-rich plasma (PRP) with Strattice mesh in a rodent ventral hernia model. Van Eps J, etal., Surg Endosc. 2015 Nov 17.
31. Large-scale screen for genes involved in gonad development. Wertz K and Herrmann BG, Mech Dev 2000 Nov;98(1-2):51-70.
32. Renoprotective effects of carvedilol in hypertensive-stroke prone rats may involve inhibition of TGF beta expression. Wong VY, etal., Br J Pharmacol. 2001 Nov;134(5):977-84. doi: 10.1038/sj.bjp.0704329.
33. Activation of activin/Smad2 and 3 signaling pathway and the potential involvement of endothelial‑mesenchymal transition in the valvular damage due to rheumatic heart disease. Xian S, etal., Mol Med Rep. 2021 Jan;23(1):10. doi: 10.3892/mmr.2020.11648. Epub 2020 Nov 12.
34. microRNA-29b Mediates the Antifibrotic Effect of Tanshinone IIA in Postinfarct Cardiac Remodeling. Yang F, etal., J Cardiovasc Pharmacol. 2015 May;65(5):456-64. doi: 10.1097/FJC.0000000000000214.
35. Association of gene polymorphisms with chronic kidney disease in high- or low-risk subjects defined by conventional risk factors. Yoshida T, etal., Int J Mol Med. 2009 Jun;23(6):785-92.
36. Lipopolysaccharide induced activin A-follistatin imbalance affects cardiac fibrosis. Zhang WQ, etal., Chin Med J (Engl). 2012 Jun;125(12):2205-12.
Additional References at PubMed
PMID:1347472   PMID:1358796   PMID:1879336   PMID:1981051   PMID:2054384   PMID:2209468   PMID:2981217   PMID:3443309   PMID:3972847   PMID:7752808   PMID:7777502   PMID:7825727  
PMID:7919967   PMID:7926795   PMID:8069308   PMID:8088797   PMID:8188220   PMID:8244386   PMID:8661741   PMID:8678985   PMID:8686743   PMID:8785585   PMID:8849351   PMID:8900172  
PMID:8948440   PMID:8984825   PMID:9021163   PMID:9037598   PMID:9050868   PMID:9164858   PMID:9382709   PMID:9614124   PMID:9832566   PMID:9870870   PMID:10022501   PMID:10088787  
PMID:10349636   PMID:10458099   PMID:10922068   PMID:10995453   PMID:11042159   PMID:11076861   PMID:11210178   PMID:11283268   PMID:12477932   PMID:12571105   PMID:12592609   PMID:12659831  
PMID:12874293   PMID:14559231   PMID:14758483   PMID:15371327   PMID:15489334   PMID:15582152   PMID:15733672   PMID:16081813   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16236725  
PMID:16314533   PMID:16444592   PMID:16452166   PMID:16556917   PMID:16602821   PMID:16818445   PMID:17029294   PMID:17135260   PMID:17453912   PMID:17662583   PMID:17881772   PMID:17950069  
PMID:17960558   PMID:18287559   PMID:18554416   PMID:18816857   PMID:19217425   PMID:19334288   PMID:19411759   PMID:19560165   PMID:20236931   PMID:20498044   PMID:20548288   PMID:20587693  
PMID:20858856   PMID:20864640   PMID:20944625   PMID:21041952   PMID:21173153   PMID:21252470   PMID:21266775   PMID:21267068   PMID:21268075   PMID:21308778   PMID:21352494   PMID:21386911  
PMID:21511879   PMID:21512159   PMID:21606205   PMID:21677750   PMID:21768377   PMID:21873635   PMID:21979435   PMID:22151329   PMID:22158707   PMID:22159717   PMID:22171010   PMID:22206015  
PMID:22235340   PMID:22351047   PMID:22560297   PMID:22573622   PMID:22682244   PMID:23273220   PMID:23377784   PMID:23630948   PMID:23658023   PMID:23907538   PMID:23921644   PMID:24006456  
PMID:24192074   PMID:24626604   PMID:24820199   PMID:24952961   PMID:24994653   PMID:25330296   PMID:25344368   PMID:25516967   PMID:25572963   PMID:25715398   PMID:25715693   PMID:25795282  
PMID:26362633   PMID:26446156   PMID:26494538   PMID:26641069   PMID:26821812   PMID:27249171   PMID:27249321   PMID:27265328   PMID:27527664   PMID:27648120   PMID:27665369   PMID:27746183  
PMID:27770432   PMID:27856617   PMID:27870967   PMID:27939132   PMID:28049691   PMID:28052872   PMID:28071719   PMID:28218627   PMID:28237967   PMID:28527294   PMID:28535371   PMID:28684544  
PMID:28809397   PMID:29191093   PMID:29530978   PMID:29551664   PMID:29593327   PMID:29618652   PMID:30550785   PMID:30566624   PMID:30635555   PMID:30670377   PMID:30738849   PMID:30936179  
PMID:31056650   PMID:31319059   PMID:31624071   PMID:31634485   PMID:31639107   PMID:31655293   PMID:31844321   PMID:32212902   PMID:32325033   PMID:32546759   PMID:32580935   PMID:32882513  
PMID:32979396   PMID:33504048   PMID:33763067   PMID:34003106   PMID:34189436   PMID:34205850   PMID:34248495   PMID:34321999   PMID:34323105   PMID:34830270   PMID:35245290   PMID:35247391  
PMID:35288551   PMID:35293576   PMID:36092713   PMID:36293324   PMID:36414671   PMID:36414704   PMID:36460641   PMID:36522157   PMID:36539111   PMID:36920550   PMID:37067297   PMID:37169038  
PMID:37414855   PMID:37702066   PMID:37727504   PMID:38011284  


Genomics

Comparative Map Data
Col3a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39145,350,698 - 45,388,866 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl145,350,698 - 45,388,866 (+)EnsemblGRCm39 Ensembl
GRCm38145,311,538 - 45,349,706 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl145,311,538 - 45,349,706 (+)EnsemblGRCm38mm10GRCm38
MGSCv37145,368,383 - 45,406,551 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36145,256,192 - 45,293,566 (+)NCBIMGSCv36mm8
Celera145,612,466 - 45,650,861 (+)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map123.67NCBI
COL3A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382188,974,373 - 189,012,746 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2188,974,373 - 189,012,746 (+)EnsemblGRCh38hg38GRCh38
GRCh372189,839,099 - 189,877,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362189,547,344 - 189,585,717 (+)NCBINCBI36Build 36hg18NCBI36
Build 342189,664,604 - 189,702,978NCBI
Celera2183,433,958 - 183,472,272 (+)NCBICelera
Cytogenetic Map2q32.2NCBI
HuRef2181,698,732 - 181,737,119 (+)NCBIHuRef
CHM1_12189,845,032 - 189,883,377 (+)NCBICHM1_1
T2T-CHM13v2.02189,463,283 - 189,501,589 (+)NCBIT2T-CHM13v2.0
Col3a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8954,866,646 - 54,902,578 (+)NCBIGRCr8
mRatBN7.2947,374,611 - 47,410,547 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl947,374,593 - 47,410,547 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx955,898,776 - 55,934,650 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0961,021,593 - 61,057,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0959,317,605 - 59,353,483 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0952,023,295 - 52,059,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl952,023,295 - 52,059,217 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0951,689,492 - 51,725,418 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4944,281,582 - 44,317,831 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1944,310,161 - 44,319,243 (+)NCBI
Celera945,061,755 - 45,097,754 (+)NCBICelera
RH 3.4 Map9388.09RGD
Cytogenetic Map9q22NCBI
Col3a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554039,721,114 - 9,757,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554039,720,831 - 9,758,019 (-)NCBIChiLan1.0ChiLan1.0
COL3A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21391,670,594 - 91,708,230 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B91,685,668 - 91,723,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B76,285,115 - 76,322,703 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B194,204,613 - 194,242,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B194,204,613 - 194,242,956 (+)Ensemblpanpan1.1panPan2
COL3A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13630,488,250 - 30,526,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3630,488,488 - 30,536,765 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3630,394,214 - 30,431,773 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03630,718,700 - 30,756,283 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3630,718,908 - 30,756,954 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13630,779,325 - 30,816,837 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03630,715,289 - 30,752,838 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03630,884,313 - 30,921,873 (+)NCBIUU_Cfam_GSD_1.0
Col3a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303147,914,117 - 147,951,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365068,886,494 - 8,923,930 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365068,886,494 - 8,923,921 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL3A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1593,526,603 - 93,596,363 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11593,556,914 - 93,595,678 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215104,067,018 - 104,105,776 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL3A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11074,455,133 - 74,493,392 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040124,979,692 - 125,017,963 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col3a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248991,192,360 - 1,230,404 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248991,192,078 - 1,230,528 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Col3a1
1379 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:404
Count of miRNA genes:306
Interacting mature miRNAs:343
Transcripts:ENSMUST00000087883, ENSMUST00000123204, ENSMUST00000129611
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
4142433Hbnr1_mHeligmosomoides bakeri nematode resistance 1 (mouse)Not determined2555019158273271Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12603916060039160Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13476013873976915Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13476013873976915Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13476013873976915Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13476013873976915Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13913280874516365Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14086800867270256Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14086800867270256Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14086800867270256Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
12050090Shm1_msperm head morphology 1 (mouse)14418690450816935Mouse
12879917Shm3_msperm head morphology 3 (mouse)14418690462946882Mouse

Markers in Region
AW550625  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,349,234 - 45,349,382UniSTSGRCm38
MGSCv37145,406,079 - 45,406,227UniSTSGRCm37
Celera145,650,389 - 45,650,537UniSTS
Cytogenetic Map1C1.1UniSTS
Whitehead/MRC_RH1735.59UniSTS
Ms10w  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,329,593 - 45,330,111UniSTSGRCm38
MGSCv37145,386,438 - 45,386,956UniSTSGRCm37
Celera145,630,520 - 45,631,038UniSTS
Cytogenetic Map1C1.1UniSTS
cM Map120.0UniSTS
Col3a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,321,677 - 45,322,443UniSTSGRCm38
MGSCv37145,378,522 - 45,379,288UniSTSGRCm37
Celera145,622,604 - 45,623,370UniSTS
Cytogenetic Map1C1.1UniSTS
cM Map125.0UniSTS
GDB:181238  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,347,661 - 45,348,706UniSTSGRCm38
MGSCv37145,404,506 - 45,405,551UniSTSGRCm37
Celera145,648,816 - 45,649,861UniSTS
Cytogenetic Map1C1.1UniSTS
X57983  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,348,815 - 45,348,987UniSTSGRCm38
MGSCv37145,405,660 - 45,405,832UniSTSGRCm37
Celera145,649,970 - 45,650,142UniSTS
Cytogenetic Map1C1.1UniSTS
Whitehead_YAC12 UniSTS
Col3a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38145,347,854 - 45,349,400UniSTSGRCm38
MGSCv37145,404,699 - 45,406,245UniSTSGRCm37
Celera145,649,009 - 45,650,555UniSTS
Cytogenetic Map1C1.1UniSTS
cM Map125.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH001863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ248239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ248240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ248241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ248242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ248243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY139268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M18933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X57983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000087883   ⟹   ENSMUSP00000085192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl145,350,698 - 45,388,866 (+)Ensembl
GRCm38.p6 Ensembl145,311,538 - 45,349,706 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl145,366,749 - 45,368,054 (+)Ensembl
GRCm38.p6 Ensembl145,327,589 - 45,328,894 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl145,350,698 - 45,364,178 (+)Ensembl
GRCm38.p6 Ensembl145,311,538 - 45,325,018 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185687   ⟹   ENSMUSP00000139894
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl145,374,926 - 45,379,834 (+)Ensembl
GRCm38.p6 Ensembl145,335,766 - 45,340,674 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186021   ⟹   ENSMUSP00000139802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl145,379,118 - 45,386,926 (+)Ensembl
GRCm38.p6 Ensembl145,339,958 - 45,347,766 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl145,350,807 - 45,356,163 (+)Ensembl
GRCm38.p6 Ensembl145,311,647 - 45,317,003 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190943
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl145,373,360 - 45,376,457 (+)Ensembl
GRCm38.p6 Ensembl145,334,200 - 45,337,297 (+)Ensembl
RefSeq Acc Id: NM_009930   ⟹   NP_034060
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39145,350,698 - 45,388,866 (+)NCBI
GRCm38145,311,538 - 45,349,706 (+)ENTREZGENE
MGSCv37145,368,383 - 45,406,551 (+)RGD
Celera145,612,466 - 45,650,861 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_034060   ⟸   NM_009930
- Peptide Label: preproprotein
- UniProtKB: Q61429 (UniProtKB/Swiss-Prot),   Q9CRN7 (UniProtKB/Swiss-Prot),   P08121 (UniProtKB/Swiss-Prot),   Q3TVI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000139802   ⟸   ENSMUST00000186021
RefSeq Acc Id: ENSMUSP00000085192   ⟸   ENSMUST00000087883
RefSeq Acc Id: ENSMUSP00000139894   ⟸   ENSMUST00000185687
Protein Domains
Fibrillar collagen NC1   VWFC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P08121-F1-model_v2 AlphaFold P08121 1-1464 view protein structure

Promoters
RGD ID:6873634
Promoter ID:EPDNEW_M268
Type:initiation region
Name:Col3a1_1
Description:Mus musculus collagen, type III, alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38145,311,631 - 45,311,691EPDNEW
RGD ID:6817527
Promoter ID:MM_KWN:625
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050577,   OTTMUST00000050578
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36145,367,726 - 45,368,872 (+)MPROMDB
RGD ID:6849506
Promoter ID:EP25040
Type:single initiation site
Name:MM_CA13
Description:alpha 1 type III collagen, COL3A1 gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 142; Mammalian alpha 1 type III collagen
Tissues & Cell Lines:fibroblasts
Experiment Methods:Primer extension with homologous sequence ladder; Nuclease protection with homologous sequence ladder; experiments; performed with closely related gene
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37145,368,476 - 45,368,536EPD
MGSCv36145,368,476 - 45,368,536EPD
RGD ID:6817530
Promoter ID:MM_KWN:626
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050579
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36145,383,466 - 45,384,867 (+)MPROMDB
RGD ID:6848551
Promoter ID:MM_TRO:146
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:MTR011714.1.626.7
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36145,402,531 - 45,403,031 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88453 AgrOrtholog
Ensembl Genes ENSMUSG00000026043 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000087883 ENTREZGENE
  ENSMUST00000087883.13 UniProtKB/Swiss-Prot
  ENSMUST00000185687.2 UniProtKB/TrEMBL
  ENSMUST00000186021.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fib_collagen_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12825 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88453 ENTREZGENE
NCBI Gene 12825 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLLAGEN ALPHA CHAIN CG42342-RELATED UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(III) CHAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(IV) CHAIN UniProtKB/TrEMBL
  MACROPHAGE RECEPTOR MARCO UniProtKB/TrEMBL
Pfam COLFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Col3a1 PhenoGen
PROSITE NC1_FIB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFC_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFC_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART COLFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP FnI-like domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WPJ5_MOUSE UniProtKB/TrEMBL
  A0A087WPS3_MOUSE UniProtKB/TrEMBL
  CO3A1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TVI5 ENTREZGENE, UniProtKB/TrEMBL
  Q3TW25_MOUSE UniProtKB/TrEMBL
  Q3UH72_MOUSE UniProtKB/TrEMBL
  Q5DTG2_MOUSE UniProtKB/TrEMBL
  Q61429 ENTREZGENE
  Q7TT32_MOUSE UniProtKB/TrEMBL
  Q8BJU6_MOUSE UniProtKB/TrEMBL
  Q8BKY2_MOUSE UniProtKB/TrEMBL
  Q8BLW4_MOUSE UniProtKB/TrEMBL
  Q8BMR6_MOUSE UniProtKB/TrEMBL
  Q8K173_MOUSE UniProtKB/TrEMBL
  Q9CRN7 ENTREZGENE
  Q9CSB7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q61429 UniProtKB/Swiss-Prot
  Q9CRN7 UniProtKB/Swiss-Prot