Fkrp (fukutin related protein) - Rat Genome Database
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Gene: Fkrp (fukutin related protein) Mus musculus
Analyze
Symbol: Fkrp
Name: fukutin related protein
RGD ID: 1314134
MGI Page MGI
Description: Exhibits dystroglycan binding activity. Involved in glycoprotein biosynthetic process and protein processing. Localizes to Golgi apparatus; extracellular space; and sarcolemma. Is expressed in brain. Used to study autosomal recessive limb-girdle muscular dystrophy type 2I; muscular dystrophy; muscular dystrophy-dystroglycanopathy; and muscular dystrophy-dystroglycanopathy type B5. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and muscular dystrophy (multiple). Orthologous to human FKRP (fukutin related protein); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A830029B19Rik; AI842067; AI847300; fukutin-related protein; LGMD; LGMD1I; MDC1C; ribitol-5-phosphate transferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,543,192 - 16,550,657 (-)NCBIGRCm39mm39
GRCm39 Ensembl716,543,171 - 16,550,657 (-)Ensembl
GRCm38716,809,267 - 16,816,732 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,809,246 - 16,816,732 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,394,616 - 17,402,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv36715,967,789 - 15,975,237 (-)NCBImm8
Celera714,007,271 - 14,014,735 (-)NCBICelera
Cytogenetic Map7A2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal b-wave amplitude  (IAGP)
abnormal brain morphology  (IAGP)
abnormal brain pia mater morphology  (IAGP)
abnormal brainstem morphology  (IAGP)
abnormal Cajal-Retzius cell morphology  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellar hemisphere morphology  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal cone electrophysiology  (IAGP)
abnormal cortical marginal zone morphology  (IAGP)
abnormal cortical plate morphology  (IAGP)
abnormal dentate gyrus morphology  (IAGP)
abnormal extensor digitorum longus morphology  (IAGP)
abnormal eye size  (IAGP)
abnormal inferior colliculus morphology  (IAGP)
abnormal meninges morphology  (IAGP)
abnormal Muller cell morphology  (IAGP)
abnormal muscle morphology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal neocortex morphology  (IAGP)
abnormal neuronal migration  (IAGP)
abnormal optic disk morphology  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal reflex  (IAGP)
abnormal retina inner limiting membrane morphology  (IAGP)
abnormal retinal ganglion layer morphology  (IAGP)
abnormal retinal inner nuclear layer morphology  (IAGP)
abnormal retinal vasculature morphology  (IAGP)
abnormal skeletal muscle fiber morphology  (IAGP)
abnormal skeletal muscle fiber type ratio  (IAGP)
abnormal stratification in cerebral cortex  (IAGP)
abnormal superior colliculus morphology  (IAGP)
abnormal tectum morphology  (IAGP)
abnormal tibialis anterior morphology  (IAGP)
abnormal vitreous body morphology  (IAGP)
calcified muscle  (IAGP)
centrally nucleated skeletal muscle fibers  (IAGP)
corneal opacity  (IAGP)
decreased birth body size  (IAGP)
decreased body weight  (IAGP)
decreased skeletal muscle fiber number  (IAGP)
dilated lateral ventricles  (IAGP)
domed cranium  (IAGP)
dystrophic muscle  (IAGP)
ectopic neuron  (IAGP)
edema  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality prior to tooth bud stage  (IAGP)
hydrocephaly  (IAGP)
increased a-wave amplitude  (IAGP)
increased circulating alanine transaminase level  (IAGP)
increased circulating creatine kinase level  (IAGP)
increased skeletal muscle fiber diameter  (IAGP)
increased skeletal muscle fiber size  (IAGP)
increased variability of skeletal muscle fiber size  (IAGP)
limb grasping  (IAGP)
muscle degeneration  (IAGP)
muscle weakness  (IAGP)
myopathy  (IAGP)
myositis  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
optic nerve hypoplasia  (IAGP)
parietal bossing  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
skeletal muscle fiber degeneration  (IAGP)
skeletal muscle fiber necrosis  (IAGP)
skeletal muscle fibrosis  (IAGP)
skeletal muscle hypertrophy  (IAGP)
thin retinal inner nuclear layer  (IAGP)
thin retinal outer nuclear layer  (IAGP)
vitreal fibroplasia  (IAGP)
References

References - curated
1. Brockington M, etal., Am J Hum Genet. 2001 Dec;69(6):1198-209. Epub 2001 Oct 8.
2. Brockington M, etal., Hum Mol Genet. 2001 Dec 1;10(25):2851-9.
3. Chan YM, etal., Hum Mol Genet. 2010 Oct 15;19(20):3995-4006. doi: 10.1093/hmg/ddq314. Epub 2010 Jul 30.
4. Esapa CT, etal., Hum Mol Genet 2002 Dec 15;11(26):3319-31.
5. Frosk P, etal., Hum Mutat. 2005 Jan;25(1):38-44.
6. Guglieri M, etal., Hum Mutat. 2008 Feb;29(2):258-66.
7. Harel T, etal., Eur J Hum Genet. 2004 Jan;12(1):38-43.
8. Hong D, etal., J Clin Neurosci. 2011 Apr;18(4):494-9. doi: 10.1016/j.jocn.2010.08.010. Epub 2011 Feb 5.
9. Kefi M, etal., Neuropediatrics. 2008 Apr;39(2):113-5. doi: 10.1055/s-2008-1081465.
10. Louhichi N, etal., Neurogenetics 2004 Feb;5(1):27-34. Epub 2003 Dec 2.
11. MGD data from the GO Consortium
12. Müller T, etal., Neuromuscul Disord. 2005 May;15(5):372-6.
13. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
14. OMIM Disease Annotation Pipeline
15. Qiao C, etal., Mol Ther. 2014 Nov;22(11):1890-9. doi: 10.1038/mt.2014.141. Epub 2014 Jul 22.
16. RGD automated import pipeline
17. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. RGD automated import pipeline for gene-chemical interactions
19. Sveen ML, etal., Ann Neurol. 2006 May;59(5):808-15.
20. Van Reeuwijk J, etal., Clin Genet. 2010 Sep;78(3):275-81. doi: 10.1111/j.1399-0004.2010.01384.x. Epub 2010 Feb 11.
21. Vieira NM, etal., Neuromuscul Disord. 2006 Dec;16(12):870-3. Epub 2006 Nov 20.
22. Wang CH, etal., Am J Pathol. 2011 Jan;178(1):261-72. doi: 10.1016/j.ajpath.2010.11.020. Epub 2010 Dec 23.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15489334   PMID:15574464   PMID:15782199   PMID:15837576   PMID:16141072   PMID:16141073  
PMID:17452335   PMID:18799693   PMID:19155270   PMID:19900540   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21900571   PMID:22270369   PMID:23591631   PMID:23817215   PMID:24234655  
PMID:24256719   PMID:24635668   PMID:25976249   PMID:26306834   PMID:26574668   PMID:27109613   PMID:27515093   PMID:27561302   PMID:27627455   PMID:27711214   PMID:28039900   PMID:28107841  
PMID:28334834   PMID:28663375   PMID:28859131   PMID:28860175   PMID:29320543   PMID:29571322   PMID:29625576   PMID:30150693   PMID:31091146   PMID:31296900   PMID:32290105   PMID:32968282  


Genomics

Comparative Map Data
Fkrp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39716,543,192 - 16,550,657 (-)NCBIGRCm39mm39
GRCm39 Ensembl716,543,171 - 16,550,657 (-)Ensembl
GRCm38716,809,267 - 16,816,732 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl716,809,246 - 16,816,732 (-)EnsemblGRCm38mm10GRCm38
MGSCv37717,394,616 - 17,402,081 (-)NCBIGRCm37mm9NCBIm37
MGSCv36715,967,789 - 15,975,237 (-)NCBImm8
Celera714,007,271 - 14,014,735 (-)NCBICelera
Cytogenetic Map7A2NCBI
FKRP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1946,746,046 - 46,776,988 (+)EnsemblGRCh38hg38GRCh38
GRCh381946,746,015 - 46,758,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371947,249,314 - 47,261,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,941,143 - 51,953,582 (+)NCBINCBI36hg18NCBI36
Build 341951,941,154 - 51,953,581NCBI
Celera1944,052,833 - 44,066,103 (+)NCBI
Cytogenetic Map19q13.32NCBI
HuRef1943,674,242 - 43,686,703 (+)NCBIHuRef
CHM1_11947,251,200 - 47,263,719 (+)NCBICHM1_1
Fkrp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2177,479,641 - 77,486,954 (-)NCBI
Rnor_6.0 Ensembl178,733,508 - 78,739,107 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0178,733,461 - 78,740,803 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0179,980,656 - 79,987,961 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,133,884 - 77,139,485 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1177,211,994 - 77,217,596 (-)NCBI
Celera171,964,734 - 71,970,335 (-)NCBICelera
Cytogenetic Map1q21NCBI
Fkrp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574786,758 - 788,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955574779,672 - 789,621 (+)NCBIChiLan1.0ChiLan1.0
FKRP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11952,268,889 - 52,277,888 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1952,273,546 - 52,276,341 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01943,738,339 - 43,748,250 (+)NCBIMhudiblu_PPA_v0panPan3
FKRP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,166,527 - 109,177,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,168,644 - 109,178,319 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1108,646,333 - 108,657,154 (-)NCBI
ROS_Cfam_1.01109,692,868 - 109,703,829 (-)NCBI
UMICH_Zoey_3.11109,370,001 - 109,380,952 (-)NCBI
UNSW_CanFamBas_1.01109,004,334 - 109,015,149 (-)NCBI
UU_Cfam_GSD_1.01109,872,874 - 109,883,835 (-)NCBI
LOC101955324
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_02440934918,958,974 - 18,968,719 (+)NCBI
SpeTri2.0NW_004936664577,109 - 586,848 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FKRP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,627,482 - 52,639,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,627,466 - 52,639,255 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,948,142 - 47,957,965 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234922
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,100,399 - 40,128,340 (+)NCBI
ChlSab1.1 Ensembl640,126,321 - 40,127,808 (+)Ensembl
Fkrp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,849,001 - 6,858,931 (-)NCBI

Position Markers
AI847300  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,809,381 - 16,809,467UniSTSGRCm38
MGSCv37717,394,730 - 17,394,816UniSTSGRCm37
Celera714,007,385 - 14,007,471UniSTS
Cytogenetic Map7A2UniSTS
Whitehead/MRC_RH7206.67UniSTS
09.MMHAP70FLC3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,814,356 - 16,814,510UniSTSGRCm38
MGSCv37717,399,705 - 17,399,859UniSTSGRCm37
Celera714,012,359 - 14,012,513UniSTS
Cytogenetic Map7A2UniSTS
Whitehead_YAC7 UniSTS
UniSTS:235607  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,809,736 - 16,809,952UniSTSGRCm38
MGSCv37717,395,085 - 17,395,301UniSTSGRCm37
Celera714,007,740 - 14,007,956UniSTS
Cytogenetic Map7A2UniSTS
AI842067  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38716,811,548 - 16,811,686UniSTSGRCm38
MGSCv37717,396,897 - 17,397,035UniSTSGRCm37
Celera714,009,552 - 14,009,690UniSTS
Cytogenetic Map7A2UniSTS
Whitehead/MRC_RH7225.41UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301377Mprf_mmaternal performance (mouse)Not determined7120266693Mouse
10043984Pbft4_mpercent body fat 4 (mouse)Not determined7120266693Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120463409Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120463409Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121695147Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121818048Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121818048Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121818048Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7269777136697919Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7326656816903498Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7330353225179993Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7457747016953936Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined71028944244289559Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71060637344606511Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71278145246781452Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71278145246781452Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1333306047333196Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71343577947435779Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71360000047700000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:517
Count of miRNA genes:341
Interacting mature miRNAs:397
Transcripts:ENSMUST00000061390
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC148981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ511806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY014040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000061390   ⟹   ENSMUSP00000059091
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl716,809,246 - 16,816,732 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205368
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl716,814,744 - 16,816,732 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205677
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl716,813,121 - 16,815,693 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206259   ⟹   ENSMUSP00000145701
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl716,811,612 - 16,815,521 (-)Ensembl
RefSeq Acc Id: NM_001358846   ⟹   NP_001345775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,543,192 - 16,550,657 (-)NCBI
GRCm38716,809,267 - 16,816,732 (-)NCBI
Sequence:
RefSeq Acc Id: NM_173430   ⟹   NP_775606
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,543,192 - 16,550,657 (-)NCBI
GRCm38716,809,267 - 16,816,732 (-)NCBI
MGSCv37717,394,616 - 17,402,081 (-)RGD
Celera714,007,271 - 14,014,735 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539929   ⟹   XP_006539992
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,543,192 - 16,549,483 (-)NCBI
GRCm38716,809,267 - 16,815,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539930   ⟹   XP_006539993
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,543,192 - 16,549,483 (-)NCBI
GRCm38716,809,267 - 16,815,551 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250562   ⟹   XP_011248864
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39716,543,192 - 16,549,483 (-)NCBI
GRCm38716,809,267 - 16,815,551 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_775606   ⟸   NM_173430
- UniProtKB: Q8CG64 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006539992   ⟸   XM_006539929
- Peptide Label: isoform X1
- UniProtKB: Q8CG64 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006539993   ⟸   XM_006539930
- Peptide Label: isoform X1
- UniProtKB: Q8CG64 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011248864   ⟸   XM_011250562
- Peptide Label: isoform X1
- UniProtKB: Q8CG64 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001345775   ⟸   NM_001358846
RefSeq Acc Id: ENSMUSP00000145701   ⟸   ENSMUST00000206259
RefSeq Acc Id: ENSMUSP00000059091   ⟸   ENSMUST00000061390

Promoters
RGD ID:6891942
Promoter ID:EPDNEW_M9422
Type:multiple initiation site
Name:Fkrp_1
Description:Mus musculus fukutin related protein , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38716,816,732 - 16,816,792EPDNEW
RGD ID:6841119
Promoter ID:MM_KWN:48929
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   Brain,   Lung
Transcripts:NM_173430,   UC009FID.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36717,402,211 - 17,402,711 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2447586 AgrOrtholog
Ensembl Genes ENSMUSG00000048920 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000059091 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145701 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061390 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000206259 UniProtKB/TrEMBL
InterPro LicD_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:243853 UniProtKB/Swiss-Prot
MGD MGI:2447586 ENTREZGENE
NCBI Gene 243853 ENTREZGENE
Pfam LicD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fkrp PhenoGen
UniProt A0A0U1RNU1_MOUSE UniProtKB/TrEMBL
  FKRP_MOUSE UniProtKB/Swiss-Prot
  Q05C54_MOUSE UniProtKB/TrEMBL
  Q3THE8_MOUSE UniProtKB/TrEMBL
  Q3TM90_MOUSE UniProtKB/TrEMBL
  Q8CG64 ENTREZGENE
UniProt Secondary Q8BJR3 UniProtKB/Swiss-Prot