Sox9 (SRY (sex determining region Y)-box 9) - Rat Genome Database
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Gene: Sox9 (SRY (sex determining region Y)-box 9) Mus musculus
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Symbol: Sox9
Name: SRY (sex determining region Y)-box 9
RGD ID: 1322514
MGI Page MGI
Description: Exhibits DNA-binding transcription activator activity, RNA polymerase II-specific; beta-catenin binding activity; and nucleic acid binding activity. Involved in several processes, including animal organ development; negative regulation of cell differentiation; and regulation of epithelial cell proliferation. Localizes to nucleus and transcription regulator complex. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and sensory organ. Used to study campomelic dysplasia. Human ortholog(s) of this gene implicated in 46,XX sex reversal 2; 46,XY sex reversal 10; and campomelic dysplasia. Orthologous to human SOX9 (SRY-box transcription factor 9); INTERACTS WITH 1,1-dichloroethene; 1,2-dichloroethane; 1,2-dimethylhydrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2010306G03Rik; AV220920; KIAA4243; mKIAA4243; mSox9; SRY-box containing gene 9; transcription factor SOX-9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911112,673,036 - 112,678,583 (+)NCBIGRCm39mm39
GRCm39 Ensembl11112,673,050 - 112,678,586 (+)Ensembl
GRCm3811112,782,210 - 112,787,757 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11112,782,224 - 112,787,760 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711112,643,524 - 112,649,071 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611112,598,314 - 112,603,839 (+)NCBImm8
Celera11124,540,008 - 124,545,554 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1177.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-taxifolin  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (EXP)
acetamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (EXP)
ammonium chloride  (ISO)
androgen antagonist  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
arachidonic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (EXP,ISO)
berberine  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Brusatol  (ISO)
buta-1,3-diene  (EXP)
Butylbenzyl phthalate  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
CHIR 99021  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
crotonaldehyde  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diethyl maleate  (ISO)
diheptyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
Diisodecyl phthalate  (ISO)
dioxygen  (EXP,ISO)
dipentyl phthalate  (ISO)
disodium selenite  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
erlotinib hydrochloride  (ISO)
ethanol  (EXP,ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gallic acid  (ISO)
genistein  (EXP)
geraniol  (ISO)
glycerol 2-phosphate  (ISO)
glycidol  (ISO)
hyaluronic acid  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (EXP)
indole-3-methanol  (ISO)
iohexol  (ISO)
ionomycin  (EXP)
iopamidol  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
kaempferol  (EXP)
L-ascorbic acid  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
leflunomide  (ISO)
methapyrilene  (ISO)
methylisothiazolinone  (ISO)
mifepristone  (ISO)
Mofezolac (TN)  (EXP)
Monobutylphthalate  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel sulfate  (ISO)
nicotinamide  (ISO)
nicotine  (ISO)
oxybenzone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
paraquat  (EXP,ISO)
PD 0325901  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (ISO)
pirinixic acid  (EXP)
prednisolone  (ISO)
progesterone  (EXP,ISO)
prostaglandin E2  (EXP)
prostaglandin F2alpha  (EXP)
rac-lactic acid  (ISO)
resmethrin  (EXP)
resveratrol  (EXP,ISO)
SB 203580  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
sulfamethoxazole  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tamoxifen  (EXP,ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thimerosal  (EXP)
titanium dioxide  (EXP)
torin 1  (ISO)
triacsin C  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
vorinostat  (ISO)
XL147  (EXP)
zearalenone  (EXP)
zileuton  (EXP)
ziram  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior head development  (IMP)
aortic valve morphogenesis  (ISO)
astrocyte fate commitment  (IGI)
branching involved in ureteric bud morphogenesis  (IEP)
bronchus cartilage development  (IMP)
cAMP-mediated signaling  (ISO)
cartilage condensation  (IMP)
cartilage development  (IDA,IMP,ISO)
cell differentiation  (IMP)
cell fate commitment  (IGI)
cell fate specification  (IMP)
cell-cell adhesion  (IMP)
cellular response to epidermal growth factor stimulus  (IDA)
cellular response to heparin  (IDA)
cellular response to interleukin-1  (ISO)
cellular response to mechanical stimulus  (IDA)
cellular response to retinoic acid  (IDA,ISO)
cellular response to transforming growth factor beta stimulus  (IEP,ISO)
central nervous system development  (IEP)
chondrocyte development  (IMP)
chondrocyte differentiation  (IBA,IDA,IEP,IMP)
chondrocyte differentiation involved in endochondral bone morphogenesis  (ISO)
chondrocyte hypertrophy  (IMP)
chromatin remodeling  (ISO)
cochlea morphogenesis  (IMP)
cytoskeleton organization  (IMP)
endocardial cushion morphogenesis  (IMP)
endochondral bone morphogenesis  (IMP)
endocrine pancreas development  (IMP)
epidermal growth factor receptor signaling pathway  (IDA)
epithelial cell proliferation involved in prostatic bud elongation  (IMP)
epithelial to mesenchymal transition  (IMP)
epithelial tube branching involved in lung morphogenesis  (IGI,IMP)
ERK1 and ERK2 cascade  (IDA)
extracellular matrix organization  (IMP)
growth plate cartilage chondrocyte growth  (IMP)
hair follicle development  (IMP)
Harderian gland development  (IMP)
heart development  (IBA,IMP)
heart valve development  (IMP)
heart valve formation  (IMP)
heart valve morphogenesis  (IMP)
homeostasis of number of cells within a tissue  (IMP)
intestinal epithelial structure maintenance  (IMP)
intrahepatic bile duct development  (IMP)
lacrimal gland development  (IMP)
limb bud formation  (IEP)
lung epithelial cell differentiation  (IMP)
lung smooth muscle development  (IMP)
male germ-line sex determination  (IMP)
male gonad development  (IEP,IGI,IMP,ISO)
male sex determination  (IGI)
mammary gland development  (IEP)
metanephric nephron tubule formation  (IGI)
metanephric tubule development  (IEP)
morphogenesis of a branching epithelium  (IGI,IMP)
morphogenesis of an epithelium  (IBA)
negative regulation of apoptotic process  (IMP,ISO)
negative regulation of beta-catenin-TCF complex assembly  (IMP)
negative regulation of biomineral tissue development  (IMP,ISO)
negative regulation of bone mineralization  (IMP)
negative regulation of canonical Wnt signaling pathway  (IDA,IMP)
negative regulation of cell population proliferation  (IMP)
negative regulation of chondrocyte differentiation  (IMP)
negative regulation of epithelial cell differentiation  (IMP)
negative regulation of epithelial cell proliferation  (IMP)
negative regulation of fatty acid oxidation  (IDA)
negative regulation of gene expression  (IMP)
negative regulation of immune system process  (IMP)
negative regulation of mesenchymal cell apoptotic process  (IMP)
negative regulation of myoblast differentiation  (IDA)
negative regulation of ossification  (IMP,ISO)
negative regulation of osteoblast differentiation  (IDA,IMP)
negative regulation of photoreceptor cell differentiation  (IGI)
negative regulation of pri-miRNA transcription by RNA polymerase II  (ISO)
negative regulation of transcription by RNA polymerase II  (IBA,ISO)
negative regulation of transcription, DNA-templated  (IDA,IMP,ISO)
neural crest cell development  (IMP)
Notch signaling pathway  (IDA)
notochord development  (IEP)
nucleosome assembly  (ISO)
oligodendrocyte differentiation  (IBA,IMP)
ossification  (IEP)
otic vesicle development  (IEP)
otic vesicle formation  (IMP)
positive regulation of branching involved in ureteric bud morphogenesis  (IMP)
positive regulation of cartilage development  (IDA,ISO)
positive regulation of cell population proliferation  (IMP,ISO)
positive regulation of cell proliferation involved in heart morphogenesis  (IMP)
positive regulation of chondrocyte differentiation  (IBA,IDA,IMP,ISO)
positive regulation of chondrocyte proliferation  (ISO)
positive regulation of epithelial cell differentiation  (IMP)
positive regulation of epithelial cell migration  (IMP,ISO,ISS)
positive regulation of epithelial cell proliferation  (IMP)
positive regulation of extracellular matrix assembly  (IMP)
positive regulation of gene expression  (IGI,ISO)
positive regulation of kidney development  (IGI)
positive regulation of male gonad development  (ISO)
positive regulation of mesenchymal cell proliferation  (IMP)
positive regulation of mesenchymal stem cell differentiation  (ISO)
positive regulation of phosphatidylinositol 3-kinase signaling  (IMP)
positive regulation of protein catabolic process  (IDA)
positive regulation of protein phosphorylation  (IDA,IMP)
positive regulation of transcription by RNA polymerase II  (IDA,IGI,IMP,ISO)
positive regulation of transcription, DNA-templated  (IDA,IMP,ISO)
prostate gland development  (IEP,ISO)
prostate gland morphogenesis  (IMP)
protein kinase B signaling  (IMP)
protein localization to nucleus  (IDA)
protein-containing complex assembly  (ISO)
regulation of branching involved in lung morphogenesis  (IMP)
regulation of cell adhesion  (IMP)
regulation of cell cycle process  (ISO)
regulation of cell differentiation  (IMP)
regulation of cell population proliferation  (IMP)
regulation of cell proliferation involved in tissue homeostasis  (IMP)
regulation of epithelial cell proliferation involved in lung morphogenesis  (IMP)
regulation of gene expression  (IDA)
regulation of transcription by RNA polymerase II  (IBA,IDA)
regulation of transcription, DNA-templated  (TAS)
renal vesicle induction  (IMP)
response to fatty acid  (IDA)
retina development in camera-type eye  (IGI)
retinal rod cell differentiation  (IGI)
Sertoli cell development  (IGI,ISO)
Sertoli cell differentiation  (IMP)
signal transduction  (IMP)
skeletal system development  (ISO)
somatic stem cell population maintenance  (IMP)
spermatogenesis  (IGI)
tissue homeostasis  (IMP)
trachea cartilage development  (IMP)
ureter development  (IGI)
ureter morphogenesis  (IGI)
ureter smooth muscle cell differentiation  (IMP)
ureter urothelium development  (IEP)

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal angiogenesis  (IAGP)
abnormal ankle joint morphology  (IAGP)
abnormal atrioventricular cushion morphology  (IAGP)
abnormal atrioventricular valve morphology  (IAGP)
abnormal axial skeleton morphology  (IAGP)
abnormal blood circulation  (IAGP)
abnormal blood vessel morphology  (IAGP)
abnormal bone marrow cavity morphology  (IAGP)
abnormal bone mineralization  (IAGP)
abnormal bone ossification  (IAGP)
abnormal bone remodeling  (IAGP)
abnormal branching involved in lung morphogenesis  (IAGP)
abnormal cartilage development  (IAGP)
abnormal cell differentiation  (IAGP)
abnormal chondrocyte physiology  (IAGP)
abnormal circulating chemokine level  (IAGP)
abnormal coat/ hair morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal craniofacial development  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal dorsal root ganglion morphology  (IAGP)
abnormal endochondral bone ossification  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epiphyseal plate morphology  (IAGP)
abnormal fetal atrioventricular canal morphology  (IAGP)
abnormal foot pad morphology  (IAGP)
abnormal forelimb stylopod morphology  (IAGP)
abnormal forelimb zeugopod morphology  (IAGP)
abnormal hair follicle bulge morphology  (IAGP)
abnormal hair follicle matrix region morphology  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair follicle outer root sheath morphology  (IAGP)
abnormal hair growth  (IAGP)
abnormal hair shaft morphology  (IAGP)
abnormal head shape  (IAGP)
abnormal heart valve morphology  (IAGP)
abnormal humerus morphology  (IAGP)
abnormal hyoid bone morphology  (IAGP)
abnormal ilium morphology  (IAGP)
abnormal interatrial septum morphology  (IAGP)
abnormal ischium morphology  (IAGP)
abnormal laryngeal cartilage morphology  (IAGP)
abnormal limb bone morphology  (IAGP)
abnormal limb bud morphology  (IAGP)
abnormal limb development  (IAGP)
abnormal long bone epiphyseal plate proliferative zone  (IAGP)
abnormal long bone hypertrophic chondrocyte zone  (IAGP)
abnormal long bone morphology  (IAGP)
abnormal lung epithelium morphology  (IAGP)
abnormal male meiosis  (IAGP)
abnormal Meckel's cartilage morphology  (IAGP)
abnormal metacarpal bone morphology  (IAGP)
abnormal mitral valve morphology  (IAGP)
abnormal osteoblast differentiation  (IAGP)
abnormal pancreas development  (IAGP)
abnormal pelvic girdle bone morphology  (IAGP)
abnormal primary sex determination  (IAGP)
abnormal primitive urogenital sinus morphology  (IAGP)
abnormal pubis morphology  (IAGP)
abnormal respiration  (IAGP)
abnormal rib morphology  (IAGP)
abnormal rostral-caudal body axis extension  (IAGP)
abnormal scapula morphology  (IAGP)
abnormal scapular spine morphology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal skin condition  (IAGP)
abnormal skin morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal sternebra morphology  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal tail morphology  (IAGP)
abnormal temporomandibular joint morphology  (IAGP)
abnormal tendon morphology  (IAGP)
abnormal testis development  (IAGP)
abnormal trabecular bone morphology  (IAGP)
abnormal tracheal cartilage morphology  (IAGP)
abnormal tricuspid valve morphology  (IAGP)
abnormal trunk neural crest cell morphology  (IAGP)
abnormal ureter morphology  (IAGP)
abnormal ureter physiology  (IAGP)
abnormal ureter smooth muscle morphology  (IAGP)
abnormal vertebrae development  (IAGP)
abnormal vertebrae morphology  (IAGP)
abnormal vertebral body morphology  (IAGP)
abnormal xiphoid process morphology  (IAGP)
absent basisphenoid bone  (IAGP)
absent cartilage  (IAGP)
absent deltoid tuberosity  (IAGP)
absent hyoid bone body  (IAGP)
absent hyoid bone lesser horns  (IAGP)
absent incus  (IAGP)
absent Leydig cells  (IAGP)
absent malleus  (IAGP)
absent Meckel's cartilage  (IAGP)
absent nasal capsule  (IAGP)
absent presphenoid bone  (IAGP)
absent stapes  (IAGP)
absent sternum  (IAGP)
absent styloid process  (IAGP)
absent testis cords  (IAGP)
absent thyroid cartilage  (IAGP)
adactyly  (IAGP)
alopecia  (IAGP)
bifurcated tongue  (IAGP)
bowed fibula  (IAGP)
bowed radius  (IAGP)
bowed tibia  (IAGP)
bowed ulna  (IAGP)
calcified mitral valve  (IAGP)
chondrodystrophy  (IAGP)
cleft secondary palate  (IAGP)
congestive heart failure  (IAGP)
conotruncal ridge hypoplasia  (IAGP)
cryptorchism  (IAGP)
decreased B cell number  (IAGP)
decreased body height  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mass  (IAGP)
decreased cell migration  (IAGP)
decreased cell proliferation  (IAGP)
decreased compact bone thickness  (IAGP)
decreased cranium length  (IAGP)
decreased glucagon secretion  (IAGP)
decreased hair follicle number  (IAGP)
decreased hematocrit  (IAGP)
decreased insulin secretion  (IAGP)
decreased length of long bones  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased pancreatic alpha cell mass  (IAGP)
decreased pancreatic beta cell mass  (IAGP)
decreased pancreatic delta cell number  (IAGP)
decreased percent body fat/body weight  (IAGP)
decreased PP cell number  (IAGP)
decreased Sertoli cell number  (IAGP)
decreased skeletal muscle mass  (IAGP)
decreased T cell number  (IAGP)
decreased total body fat amount  (IAGP)
decreased trabecular bone thickness  (IAGP)
dermatitis  (IAGP)
dilated ureter  (IAGP)
disproportionate dwarf  (IAGP)
distended abdomen  (IAGP)
distended urinary bladder  (IAGP)
domed cranium  (IAGP)
dry skin  (IAGP)
early eyelid opening  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
embryonic lethality prior to organogenesis  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
enlarged spleen  (IAGP)
extramedullary hematopoiesis  (IAGP)
failure of Mullerian duct regression  (IAGP)
female infertility  (IAGP)
hair follicle degeneration  (IAGP)
heart hypoplasia  (IAGP)
hunched posture  (IAGP)
hydroureter  (IAGP)
impaired cranial neural crest cell differentiation  (IAGP)
impaired skin barrier function  (IAGP)
impaired ureteric peristalsis  (IAGP)
increased bone marrow cell number  (IAGP)
increased circulating interleukin-17 level  (IAGP)
increased hair follicle apoptosis  (IAGP)
increased hemoglobin content  (IAGP)
increased IgE level  (IAGP)
increased interleukin-17 secretion  (IAGP)
increased leukocyte cell number  (IAGP)
increased macrophage cell number  (IAGP)
increased neutrophil cell number  (IAGP)
increased pruritus  (IAGP)
increased spleen red pulp amount  (IAGP)
increased T-helper 1 cell number  (IAGP)
increased T-helper 17 cell number  (IAGP)
increased T-helper 2 cell number  (IAGP)
increased trunk neural crest cell apoptosis  (IAGP)
increased vascular endothelial cell number  (IAGP)
increased width of hypertrophic chondrocyte zone  (IAGP)
kyphosis  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
lumbar vertebral fusion  (IAGP)
lung cysts  (IAGP)
meteorism  (IAGP)
micrognathia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
osteoporosis  (IAGP)
pancreatic islet hyperplasia  (IAGP)
pericardial edema  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature bone ossification  (IAGP)
premature death  (IAGP)
premature endochondral bone ossification  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
primary sex reversal  (IAGP)
reduced male fertility  (IAGP)
respiratory distress  (IAGP)
rib fusion  (IAGP)
scapular bone hypoplasia  (IAGP)
sex reversal  (IAGP)
short femur  (IAGP)
short humerus  (IAGP)
short limbs  (IAGP)
short mandible  (IAGP)
short maxilla  (IAGP)
short radius  (IAGP)
short snout  (IAGP)
short sternum  (IAGP)
short tail  (IAGP)
short ulna  (IAGP)
shortened head  (IAGP)
small lung  (IAGP)
small mandible  (IAGP)
small mandibular condyloid process  (IAGP)
small pubis  (IAGP)
small scapula  (IAGP)
small thoracic cage  (IAGP)
thick epidermis  (IAGP)
thick interventricular septum  (IAGP)
thrombocytosis  (IAGP)
References

Additional References at PubMed
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PMID:25794678   PMID:25799994   PMID:25800090   PMID:25808752   PMID:25859222   PMID:25888505   PMID:25889273   PMID:25902485   PMID:25917818   PMID:25919081   PMID:25922531   PMID:25926361  
PMID:25956904   PMID:25966682   PMID:25972016   PMID:26001784   PMID:26033091   PMID:26045173   PMID:26062936   PMID:26062940   PMID:26093309   PMID:26095047   PMID:26108792   PMID:26116666  
PMID:26134413   PMID:26146088   PMID:26150426   PMID:26151572   PMID:26156633   PMID:26170137   PMID:26186931   PMID:26188246   PMID:26194606   PMID:26203155   PMID:26212662   PMID:26234751  
PMID:26235047   PMID:26235536   PMID:26235626   PMID:26279573   PMID:26288816   PMID:26290048   PMID:26292757   PMID:26295701   PMID:26321050   PMID:26329601   PMID:26333992   PMID:26362256  
PMID:26395480   PMID:26402323   PMID:26440894   PMID:26450967   PMID:26455392   PMID:26494792   PMID:26505114   PMID:26525672   PMID:26527273   PMID:26536904   PMID:26538639   PMID:26545946  
PMID:26546974   PMID:26550799   PMID:26555052   PMID:26586225   PMID:26598619   PMID:26634652   PMID:26644382   PMID:26651607   PMID:26653852   PMID:26657766   PMID:26657772   PMID:26685160  
PMID:26689699   PMID:26697723   PMID:26701347   PMID:26771085   PMID:26776520   PMID:26777999   PMID:26794256   PMID:26806292   PMID:26839365   PMID:26856660   PMID:26859889   PMID:26864488  
PMID:26869074   PMID:26890219   PMID:26910875   PMID:26911688   PMID:26921474   PMID:26939755   PMID:26940020   PMID:26944677   PMID:26952977   PMID:26952979   PMID:26959361   PMID:26992132  
PMID:27000654   PMID:27002001   PMID:27009039   PMID:27012200   PMID:27018594   PMID:27043282   PMID:27046536   PMID:27056911   PMID:27088858   PMID:27118120   PMID:27120339   PMID:27145737  
PMID:27160681   PMID:27199373   PMID:27210758   PMID:27213272   PMID:27226320   PMID:27235933   PMID:27238423   PMID:27241892   PMID:27250101   PMID:27257806   PMID:27261459   PMID:27262401  
PMID:27270601   PMID:27287812   PMID:27292641   PMID:27292642   PMID:27302397   PMID:27325675   PMID:27328324   PMID:27341756   PMID:27351100   PMID:27352137   PMID:27358050   PMID:27381226  
PMID:27429045   PMID:27436052   PMID:27471255   PMID:27498191   PMID:27506979   PMID:27527664   PMID:27531557   PMID:27577269   PMID:27578791   PMID:27585590   PMID:27593694   PMID:27605619  
PMID:27606421   PMID:27616714   PMID:27621061   PMID:27621062   PMID:27638301   PMID:27654891   PMID:27697904   PMID:27701636   PMID:27706140   PMID:27709799   PMID:27713395   PMID:27732085  
PMID:27736991   PMID:27740873   PMID:27748998   PMID:27806288   PMID:27827819   PMID:27862528   PMID:27869164   PMID:27881681   PMID:27941074   PMID:27989796   PMID:27993987   PMID:28011632  
PMID:28013293   PMID:28027321   PMID:28045957   PMID:28059449   PMID:28069589   PMID:28069742   PMID:28071588   PMID:28107452   PMID:28118982   PMID:28123425   PMID:28150810   PMID:28162974  
PMID:28166224   PMID:28169396   PMID:28172500   PMID:28192800   PMID:28263186   PMID:28279198   PMID:28285099   PMID:28323137   PMID:28323616   PMID:28327634   PMID:28336567   PMID:28340616  
PMID:28371069   PMID:28386540   PMID:28402857   PMID:28414273   PMID:28423321   PMID:28426816   PMID:28432216   PMID:28434617   PMID:28472341   PMID:28496037   PMID:28501478   PMID:28506998  
PMID:28512199   PMID:28527696   PMID:28538179   PMID:28546511   PMID:28576773   PMID:28619823   PMID:28619824   PMID:28625870   PMID:28627474   PMID:28630873   PMID:28637242   PMID:28650345  
PMID:28687932   PMID:28724751   PMID:28758904   PMID:28770354   PMID:28790014   PMID:28793255   PMID:28797033   PMID:28800889   PMID:28807898   PMID:28807899   PMID:28807903   PMID:28809397  
PMID:28814327   PMID:28827394   PMID:28838957   PMID:28859094   PMID:28892058   PMID:28893945   PMID:28900034   PMID:28923684   PMID:28928395   PMID:28931923   PMID:28938467   PMID:28943241  
PMID:28947535   PMID:28949961   PMID:28954202   PMID:28959031   PMID:28960679   PMID:28983104   PMID:29031500   PMID:29042436   PMID:29044125   PMID:29058721   PMID:29059173   PMID:29068314  
PMID:29100091   PMID:29106906   PMID:29107072   PMID:29109128   PMID:29131159   PMID:29174564   PMID:29180572   PMID:29180744   PMID:29190781   PMID:29196261   PMID:29222391   PMID:29273440  
PMID:29285798   PMID:29292497   PMID:29294332   PMID:29317485   PMID:29324782   PMID:29330353   PMID:29337183   PMID:29342370   PMID:29361054   PMID:29361553   PMID:29386246   PMID:29409032  
PMID:29420474   PMID:29425963   PMID:29428562   PMID:29440304   PMID:29449451   PMID:29483576   PMID:29511023   PMID:29513653   PMID:29516783   PMID:29523871   PMID:29532549   PMID:29532564  
PMID:29567669   PMID:29578405   PMID:29587145   PMID:29602800   PMID:29604291   PMID:29609731   PMID:29615464   PMID:29618652   PMID:29636449   PMID:29644115   PMID:29659575   PMID:29689273  
PMID:29691400   PMID:29700121   PMID:29712669   PMID:29729398   PMID:29735531   PMID:29735715   PMID:29751002   PMID:29769265   PMID:29771958   PMID:29777903   PMID:29795630   PMID:29798841  
PMID:29852132   PMID:29853617   PMID:29853630   PMID:29879429   PMID:29885287   PMID:29899135   PMID:29899403   PMID:29903884   PMID:29920846   PMID:29922981   PMID:29929043   PMID:29941866  
PMID:29950483   PMID:29950673   PMID:29956664   PMID:29970477   PMID:29975682   PMID:29986868   PMID:29986869   PMID:29986870   PMID:29992973   PMID:30002128   PMID:30008325   PMID:30010625  
PMID:30021842   PMID:30022023   PMID:30022162   PMID:30026494   PMID:30040984   PMID:30048641   PMID:30057417   PMID:30067986   PMID:30085028   PMID:30093553   PMID:30100263   PMID:30111653  
PMID:30126902   PMID:30127719   PMID:30134070   PMID:30135482   PMID:30153454   PMID:30166332   PMID:30166336   PMID:30185873   PMID:30186101   PMID:30188892   PMID:30194919   PMID:30201295  
PMID:30212841   PMID:30228104   PMID:30285093   PMID:30305289   PMID:30355480   PMID:30375389   PMID:30377232   PMID:30389914   PMID:30392226   PMID:30392800   PMID:30413887   PMID:30424580  
PMID:30470800   PMID:30478225   PMID:30487608   PMID:30504125   PMID:30504126   PMID:30504829   PMID:30504911   PMID:30509557   PMID:30518625   PMID:30552336   PMID:30559459   PMID:30576429  
PMID:30578393   PMID:30590051   PMID:30595533   PMID:30604848   PMID:30617207   PMID:30630826   PMID:30635419   PMID:30638933   PMID:30649340   PMID:30651296   PMID:30658984   PMID:30664861  
PMID:30668728   PMID:30685387   PMID:30696710   PMID:30735494   PMID:30737693   PMID:30745426   PMID:30758073   PMID:30765281   PMID:30767782   PMID:30773487   PMID:30782824   PMID:30853440  
PMID:30871468   PMID:30872705   PMID:30883226   PMID:30884041   PMID:30886049   PMID:30889310   PMID:30912742   PMID:30916783   PMID:30944105   PMID:30951662   PMID:30983567   PMID:30988352  
PMID:31002540   PMID:31010826   PMID:31038803   PMID:31064775   PMID:31073041   PMID:31076486   PMID:31084574   PMID:31104943   PMID:31105007   PMID:31116734   PMID:31121357   PMID:31142573  
PMID:31153924   PMID:31160421   PMID:31201281   PMID:31221478   PMID:31221640   PMID:31242446   PMID:31242448   PMID:31285319   PMID:31310588   PMID:31319059   PMID:31320326   PMID:31320650  
PMID:31323030   PMID:31351040   PMID:31358994   PMID:31412250   PMID:31442442   PMID:31461644   PMID:31469182   PMID:31485717   PMID:31518072   PMID:31524221   PMID:31530896   PMID:31534052  
PMID:31540914   PMID:31548395   PMID:31562139   PMID:31562240   PMID:31586559   PMID:31604927   PMID:31618630   PMID:31669249   PMID:31672914   PMID:31685810   PMID:31712577   PMID:31719045  
PMID:31748609   PMID:31754036   PMID:31776260   PMID:31779270   PMID:31813798   PMID:31844668   PMID:31851932   PMID:31896583   PMID:31898934   PMID:31910233   PMID:31913463   PMID:31923241  
PMID:31924792   PMID:31932351   PMID:31940751   PMID:31949107   PMID:31949165   PMID:31953387   PMID:31968244   PMID:32001436   PMID:32002646   PMID:32005677   PMID:32011766   PMID:32017444  
PMID:32020708   PMID:32059775   PMID:32103177   PMID:32127497   PMID:32141129   PMID:32160556   PMID:32186512   PMID:32274496   PMID:32290615   PMID:32294451   PMID:32317630   PMID:32319178  
PMID:32320893   PMID:32344102   PMID:32350257   PMID:32369453   PMID:32393888   PMID:32398354   PMID:32414917   PMID:32424153   PMID:32439755   PMID:32439762   PMID:32439983   PMID:32450947  
PMID:32452519   PMID:32460513   PMID:32493750   PMID:32515350   PMID:32541003   PMID:32541010   PMID:32579270   PMID:32580935   PMID:32616504   PMID:32715478   PMID:32747435   PMID:32768399  
PMID:32800757   PMID:32852840   PMID:32855415   PMID:32887795   PMID:32901292   PMID:32950463   PMID:32994318   PMID:33004521   PMID:33027692   PMID:33051257   PMID:33073849   PMID:33080014  
PMID:33199444   PMID:33201874   PMID:33259516   PMID:33363172   PMID:33483579   PMID:33526661  


Genomics

Comparative Map Data
Sox9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911112,673,036 - 112,678,583 (+)NCBIGRCm39mm39
GRCm39 Ensembl11112,673,050 - 112,678,586 (+)Ensembl
GRCm3811112,782,210 - 112,787,757 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11112,782,224 - 112,787,760 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711112,643,524 - 112,649,071 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611112,598,314 - 112,603,839 (+)NCBImm8
Celera11124,540,008 - 124,545,554 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1177.27NCBI
SOX9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1772,121,020 - 72,126,416 (+)EnsemblGRCh38hg38GRCh38
GRCh381772,121,020 - 72,126,416 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371770,117,161 - 70,122,557 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361767,628,756 - 67,634,156 (+)NCBINCBI36hg18NCBI36
Build 341767,628,755 - 67,634,156NCBI
Celera1766,688,499 - 66,693,898 (+)NCBI
Cytogenetic Map17q24.3NCBI
HuRef1765,510,108 - 65,515,656 (+)NCBIHuRef
CHM1_11770,181,222 - 70,186,622 (+)NCBICHM1_1
Sox9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21097,806,485 - 97,811,994 (+)NCBI
Rnor_6.0 Ensembl10101,288,489 - 101,293,379 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.010101,288,528 - 101,294,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010100,964,754 - 100,970,581 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410102,392,187 - 102,394,256 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110102,408,236 - 102,408,622 (+)NCBI
Celera1096,424,278 - 96,429,703 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Sox9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955478940,177 - 945,563 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955478941,684 - 945,563 (-)NCBIChiLan1.0ChiLan1.0
SOX9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11771,491,419 - 71,498,911 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01766,028,737 - 66,034,122 (+)NCBIMhudiblu_PPA_v0panPan3
SOX9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.198,275,049 - 8,278,172 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl98,275,049 - 8,278,172 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha99,564,949 - 9,568,092 (+)NCBI
ROS_Cfam_1.098,479,949 - 8,483,108 (-)NCBI
UMICH_Zoey_3.198,522,923 - 8,526,068 (-)NCBI
UNSW_CanFamBas_1.098,777,560 - 8,780,707 (-)NCBI
UU_Cfam_GSD_1.098,722,828 - 8,725,975 (-)NCBI
Sox9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_0244056028,350,254 - 8,354,855 (-)NCBI
SpeTri2.0NW_0049366551,849,044 - 1,852,648 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOX9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl128,642,158 - 8,647,315 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1128,642,154 - 8,647,315 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2129,029,449 - 9,032,820 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap12p13-p11NCBI
SOX9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11649,519,749 - 49,523,967 (-)NCBI
ChlSab1.1 Ensembl1649,518,185 - 49,523,898 (-)Ensembl
Sox9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248012,296,353 - 2,300,853 (+)NCBI

Position Markers
AV220920  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,785,974 - 112,786,093UniSTSGRCm38
MGSCv3711112,647,288 - 112,647,407UniSTSGRCm37
Celera11124,543,771 - 124,543,890UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
Whitehead/MRC_RH111523.49UniSTS
RH134713  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,787,518 - 112,787,703UniSTSGRCm38
MGSCv3711112,648,832 - 112,649,017UniSTSGRCm37
Celera11124,545,315 - 124,545,500UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
PMC186395P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,784,002 - 112,784,946UniSTSGRCm38
MGSCv3711112,645,316 - 112,646,260UniSTSGRCm37
Celera11124,541,799 - 124,542,743UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv3711112,646,043 - 112,646,321UniSTSGRCm37
MGSCv3711112,644,259 - 112,645,155UniSTSGRCm37
MGSCv3711112,643,918 - 112,645,250UniSTSGRCm37
MGSCv3711112,645,299 - 112,646,559UniSTSGRCm37
MGSCv3711112,645,271 - 112,646,198UniSTSGRCm37
MGSCv3711112,645,187 - 112,645,312UniSTSGRCm37
MGSCv3711112,644,275 - 112,645,212UniSTSGRCm37
MGSCv3711112,646,922 - 112,647,131UniSTSGRCm37
MGSCv3711112,646,296 - 112,646,502UniSTSGRCm37
MGSCv3711112,646,614 - 112,646,801UniSTSGRCm37
Celera11124,541,670 - 124,541,795UniSTS
Celera11124,541,782 - 124,543,042UniSTS
Celera11124,541,754 - 124,542,681UniSTS
Celera11124,540,743 - 124,541,638UniSTS
Celera11124,540,759 - 124,541,695UniSTS
Celera11124,540,402 - 124,541,733UniSTS
Celera11124,542,779 - 124,542,985UniSTS
Celera11124,542,526 - 124,542,804UniSTS
Celera11124,543,097 - 124,543,284UniSTS
Celera11124,543,405 - 124,543,614UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
cM Map1169.5UniSTS
cM Map1169.5UniSTS
cM Map1169.5UniSTS
cM Map1169.5UniSTS
PMC34415P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,782,586 - 112,782,882UniSTSGRCm38
MGSCv3711112,643,900 - 112,644,196UniSTSGRCm37
Celera11124,540,384 - 124,540,680UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
GDB:580585  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,782,956 - 112,783,856UniSTSGRCm38
MGSCv3711112,644,270 - 112,645,170UniSTSGRCm37
Celera11124,540,754 - 124,541,653UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
MARC_71570-71571:1249593890:3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,783,880 - 112,784,754UniSTSGRCm38
MGSCv3711112,645,194 - 112,646,068UniSTSGRCm37
Celera11124,541,677 - 124,542,551UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
MARC_73516-74158:1250603421:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,784,988 - 112,785,506UniSTSGRCm38
MGSCv3711112,646,302 - 112,646,820UniSTSGRCm37
Celera11124,542,785 - 124,543,303UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,784,729 - 112,785,007UniSTSGRCm38
MGSCv3711112,646,043 - 112,646,321UniSTSGRCm37
Celera11124,542,526 - 124,542,804UniSTS
Cytogenetic Map11E2UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,783,873 - 112,783,998UniSTSGRCm38
MGSCv3711112,645,187 - 112,645,312UniSTSGRCm37
Celera11124,541,670 - 124,541,795UniSTS
Cytogenetic Map11E2UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,782,945 - 112,783,841UniSTSGRCm38
MGSCv3711112,644,259 - 112,645,155UniSTSGRCm37
Celera11124,540,743 - 124,541,638UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,785,608 - 112,785,817UniSTSGRCm38
MGSCv3711112,646,922 - 112,647,131UniSTSGRCm37
Celera11124,543,405 - 124,543,614UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,783,957 - 112,784,884UniSTSGRCm38
MGSCv3711112,645,271 - 112,646,198UniSTSGRCm37
Celera11124,541,754 - 124,542,681UniSTS
Cytogenetic Map11E2UniSTS
cM Map1169.5UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,782,604 - 112,783,936UniSTSGRCm38
MGSCv3711112,643,918 - 112,645,250UniSTSGRCm37
Celera11124,540,402 - 124,541,733UniSTS
Cytogenetic Map11E2UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,784,982 - 112,785,188UniSTSGRCm38
MGSCv3711112,646,296 - 112,646,502UniSTSGRCm37
Celera11124,542,779 - 124,542,985UniSTS
Cytogenetic Map11E2UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,785,300 - 112,785,487UniSTSGRCm38
MGSCv3711112,646,614 - 112,646,801UniSTSGRCm37
Celera11124,543,097 - 124,543,284UniSTS
Cytogenetic Map11E2UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,782,961 - 112,783,898UniSTSGRCm38
MGSCv3711112,644,275 - 112,645,212UniSTSGRCm37
Celera11124,540,759 - 124,541,695UniSTS
Cytogenetic Map11E2UniSTS
Sox9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811112,783,985 - 112,785,245UniSTSGRCm38
MGSCv3711112,645,299 - 112,646,559UniSTSGRCm37
Celera11124,541,782 - 124,543,042UniSTS
Cytogenetic Map11E2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
14746970Manh71_mmandible shape 71 (mouse)1179525431113525431Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181683655115683810Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181683655115683810Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181919441115919441Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182486872116486994Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189978425122082543Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191713782122082543Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191713782122082543Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193338357122082543Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194172953118131898Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194300000119000000Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94546357118131898Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195513139122082543Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195513139122082543Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196246848122082543Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196919310122082543Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198461783122082543Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198609643122082543Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199363361122082543Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100167277122082543Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100363360120996339Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101131764122082543Mouse
14700693Ppiq12_mprepulse inhibition QTL 12 (mouse)11101613994114581537Mouse
14700694Ppiq13_mprepulse inhibition QTL 13 (mouse)11101613994114581537Mouse
14700695Ppiq14_mprepulse inhibition QTL 14 (mouse)11101613994114581537Mouse
14700696Ppiq15_mprepulse inhibition QTL 15 (mouse)11101613994114581537Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103383166115130618Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:706
Count of miRNA genes:400
Interacting mature miRNAs:483
Transcripts:ENSMUST00000000579
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF421878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL683879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ790160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z18958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000000579   ⟹   ENSMUSP00000000579
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11112,782,224 - 112,787,760 (+)Ensembl
RefSeq Acc Id: NM_011448   ⟹   NP_035578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911112,673,036 - 112,678,583 (+)NCBI
GRCm3811112,782,210 - 112,787,757 (+)ENTREZGENE
MGSCv3711112,643,524 - 112,649,071 (+)RGD
Celera11124,540,008 - 124,545,554 (+)RGD
cM Map11 ENTREZGENE
Sequence: