Csgalnact1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Csgalnact1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1) Mus musculus
Analyze
Symbol: Csgalnact1
Name: chondroitin sulfate N-acetylgalactosaminyltransferase 1
RGD ID: 1316918
MGI Page MGI
Description: Predicted to have transferase activity, transferring hexosyl groups. Involved in chondroitin sulfate metabolic process; extracellular matrix organization; and skeletal system development. Predicted to localize to Golgi cisterna membrane and integral component of membrane. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Orthologous to human CSGALNACT1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1); PARTICIPATES IN chondroitin sulfate biosynthetic pathway; INTERACTS WITH 4,4'-sulfonyldiphenol; 4-hydroxyphenyl retinamide; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4732435N03Rik; beta1,4 N-acetylgalactosaminyltransferase; beta4GalNAcT-1; chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1; CSGalN; CSGalNAcT-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39868,809,433 - 69,188,270 (-)NCBIGRCm39mm39
GRCm38868,356,781 - 68,735,621 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl868,356,781 - 68,735,146 (-)EnsemblGRCm38mm10GRCm38
MGSCv37870,880,682 - 71,259,041 (-)NCBIGRCm37mm9NCBIm37
MGSCv36871,285,783 - 71,664,123 (-)NCBImm8
Celera870,901,764 - 71,270,170 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17145758   PMID:18799693   PMID:20562862  
PMID:20812917   PMID:21148564   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22280990   PMID:22535667   PMID:24220492   PMID:25568321   PMID:28974755   PMID:28982363   PMID:29287114  
PMID:30126967   PMID:30228991   PMID:30459452  


Genomics

Comparative Map Data
Csgalnact1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39868,809,433 - 69,188,270 (-)NCBIGRCm39mm39
GRCm38868,356,781 - 68,735,621 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl868,356,781 - 68,735,146 (-)EnsemblGRCm38mm10GRCm38
MGSCv37870,880,682 - 71,259,041 (-)NCBIGRCm37mm9NCBIm37
MGSCv36871,285,783 - 71,664,123 (-)NCBImm8
Celera870,901,764 - 71,270,170 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
CSGALNACT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl819,404,161 - 19,758,029 (-)EnsemblGRCh38hg38GRCh38
GRCh38819,404,161 - 19,757,908 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37819,261,672 - 19,540,261 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36819,305,952 - 19,584,374 (-)NCBINCBI36hg18NCBI36
Celera818,225,010 - 18,503,692 (-)NCBI
Cytogenetic Map8p21.3NCBI
HuRef817,801,989 - 18,080,455 (-)NCBIHuRef
CHM1_1819,463,117 - 19,741,804 (-)NCBICHM1_1
Csgalnact1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01622,704,318 - 23,075,071 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1622,979,444 - 23,074,798 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01622,733,680 - 22,963,531 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41622,852,516 - 22,947,139 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11622,852,484 - 22,946,543 (+)NCBI
Celera1621,395,359 - 21,488,688 (+)NCBICelera
Cytogenetic Map16p14NCBI
Csgalnact1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540343,178,520 - 43,478,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540343,178,520 - 43,347,121 (-)NCBIChiLan1.0ChiLan1.0
CSGALNACT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1815,576,416 - 15,929,342 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl815,576,416 - 15,904,123 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0818,626,998 - 18,980,416 (-)NCBIMhudiblu_PPA_v0panPan3
CSGALNACT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1622,219,861 - 22,392,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11622,219,324 - 22,546,501 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Csgalnact1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365553,639,459 - 3,807,483 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSGALNACT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11712,145,141 - 12,498,777 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21710,059,885 - 10,154,331 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSGALNACT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl817,494,187 - 17,695,037 (-)Ensembl
ChlSab1.1817,494,312 - 17,851,497 (-)NCBI
Csgalnact1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475815,200,726 - 15,517,146 (-)NCBI

Position Markers
34.MMHAP86FLD4.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38868,730,682 - 68,730,863UniSTSGRCm38
MGSCv37871,254,581 - 71,254,762UniSTSGRCm37
Cytogenetic Map8B3.3UniSTS
Whitehead_YAC8 UniSTS
UniSTS:235906  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381128,331,905 - 128,332,018UniSTSGRCm38
GRCm38868,620,354 - 68,620,467UniSTSGRCm38
MGSCv371130,228,482 - 130,228,595UniSTSGRCm37
MGSCv37871,144,253 - 71,144,366UniSTSGRCm37
Celera871,164,001 - 71,164,114UniSTS
Celera1130,958,786 - 130,958,899UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map1E4UniSTS
cM Map166.6UniSTS
Csgalnact1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38868,373,548 - 68,373,712UniSTSGRCm38
Celera870,918,454 - 70,918,618UniSTS
Cytogenetic Map8B3.3UniSTS
cM Map833.88UniSTS
D1S2012E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381024,372,908 - 24,373,721UniSTSGRCm38
GRCm38868,636,782 - 68,638,211UniSTSGRCm38
MGSCv37871,160,681 - 71,162,110UniSTSGRCm37
MGSCv371024,092,714 - 24,093,527UniSTSGRCm37
Cytogenetic Map8B3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1004
Count of miRNA genes:591
Interacting mature miRNAs:700
Transcripts:ENSMUST00000078350, ENSMUST00000125727, ENSMUST00000130214, ENSMUST00000136060, ENSMUST00000139141, ENSMUST00000143586, ENSMUST00000150083
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC129206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV231417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY289912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY291742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000078350   ⟹   ENSMUSP00000077459
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,356,781 - 68,735,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125727
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,557,071 - 68,735,115 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130214   ⟹   ENSMUSP00000119817
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,357,967 - 68,735,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136060   ⟹   ENSMUSP00000116134
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,388,643 - 68,735,102 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139141
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,645,799 - 68,735,115 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143586
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,461,581 - 68,735,115 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150083
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,556,972 - 68,735,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211871
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl868,461,825 - 68,529,887 (-)Ensembl
RefSeq Acc Id: NM_001252623   ⟹   NP_001239552
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,187,798 (-)NCBI
GRCm38868,356,781 - 68,735,146 (-)NCBI
Celera870,901,762 - 71,270,174 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001364256   ⟹   NP_001351185
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,187,737 (-)NCBI
GRCm38868,356,781 - 68,735,085 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172753   ⟹   NP_766341
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,187,798 (-)NCBI
GRCm38868,356,781 - 68,735,146 (-)NCBI
MGSCv37870,880,682 - 71,259,041 (-)RGD
Celera870,901,762 - 71,270,174 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509626   ⟹   XP_006509689
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,187,654 (-)NCBI
GRCm38868,356,781 - 68,735,011 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509627   ⟹   XP_006509690
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,188,270 (-)NCBI
GRCm38868,356,781 - 68,735,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509628   ⟹   XP_006509691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,188,270 (-)NCBI
GRCm38868,356,781 - 68,735,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509629   ⟹   XP_006509692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,013,809 (-)NCBI
GRCm38868,356,781 - 68,561,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509630   ⟹   XP_006509693
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 68,982,846 (-)NCBI
GRCm38868,356,781 - 68,540,664 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242290   ⟹   XP_011240592
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,188,270 (-)NCBI
GRCm38868,356,781 - 68,735,621 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934802
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,188,268 (-)NCBI
RefSeq Acc Id: XR_004934803
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39868,809,433 - 69,188,268 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_766341   ⟸   NM_172753
- UniProtKB: Q8BJQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239552   ⟸   NM_001252623
- UniProtKB: Q8BJQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509691   ⟸   XM_006509628
- Peptide Label: isoform X1
- UniProtKB: Q8BJQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509690   ⟸   XM_006509627
- Peptide Label: isoform X1
- UniProtKB: Q8BJQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509689   ⟸   XM_006509626
- Peptide Label: isoform X1
- UniProtKB: Q8BJQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509692   ⟸   XM_006509629
- Peptide Label: isoform X1
- UniProtKB: Q8BJQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509693   ⟸   XM_006509630
- Peptide Label: isoform X1
- UniProtKB: Q8BJQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240592   ⟸   XM_011242290
- Peptide Label: isoform X1
- UniProtKB: Q8BJQ9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001351185   ⟸   NM_001364256
RefSeq Acc Id: ENSMUSP00000119817   ⟸   ENSMUST00000130214
RefSeq Acc Id: ENSMUSP00000077459   ⟸   ENSMUST00000078350
RefSeq Acc Id: ENSMUSP00000116134   ⟸   ENSMUST00000136060

Promoters
RGD ID:8667219
Promoter ID:EPDNEW_M11636
Type:initiation region
Name:Csgalnact1_1
Description:Mus musculus chondroitin sulfate N-acetylgalactosaminyltransferase1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38868,735,068 - 68,735,128EPDNEW
RGD ID:6849249
Promoter ID:MM_XEF:7079
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:NM_001130518
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36871,080,706 - 71,081,206 (-)MPROMDB
RGD ID:6842988
Promoter ID:MM_KWN:54590
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Kidney,   Lung,   MEF_B4
Transcripts:OTTMUST00000061381,   OTTMUST00000061383,   OTTMUST00000061424,   OTTMUST00000061430,   OTTMUST00000061431,   OTTMUST00000061432,   UC009LWG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36871,258,679 - 71,259,179 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442354 AgrOrtholog
Ensembl Genes ENSMUSG00000036356 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000077459 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116134 UniProtKB/TrEMBL
  ENSMUSP00000119817 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000078350 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130214 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000136060 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/Swiss-Prot
InterPro Chond_GalNAc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
KEGG Report mmu:234356 UniProtKB/Swiss-Prot
MGD MGI:2442354 ENTREZGENE
NCBI Gene 234356 ENTREZGENE
Pfam CHGN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Csgalnact1 PhenoGen
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniGene Mm.334569 ENTREZGENE
  Mm.489712 ENTREZGENE
UniProt A0A0R4J1S7_MOUSE UniProtKB/TrEMBL
  CGAT1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3UNQ5 UniProtKB/Swiss-Prot
  Q3UZX6 UniProtKB/Swiss-Prot
  Q5FWX8 UniProtKB/Swiss-Prot
  Q8BWV9 UniProtKB/Swiss-Prot
  Q8BZU7 UniProtKB/Swiss-Prot
  Q8C195 UniProtKB/Swiss-Prot
  Q8R0M6 UniProtKB/Swiss-Prot