Symbol:
Serac1
Name:
serine active site containing 1
RGD ID:
1557153
MGI Page
MGI
Description:
Acts upstream of or within extracellular matrix organization. Located in endoplasmic reticulum membrane; extracellular matrix; and mitochondrial outer membrane. Used to study 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. Orthologous to human SERAC1 (serine active site containing 1).
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
4930511N22Rik; D17Ertd141; D17Ertd141e; serine active site-containing protein 1
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SERAC1 (serine active site containing 1) HGNC
EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):
Serac1 (serine active site containing 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Serac1 (serine active site containing 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SERAC1 (serine active site containing 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SERAC1 (serine active site containing 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Serac1 (serine active site containing 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SERAC1 (serine active site containing 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SERAC1 (serine active site containing 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Serac1 (serine active site containing 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Homo sapiens (human):
SERAC1 (serine active site containing 1)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Rattus norvegicus (Norway rat):
Serac1 (serine active site containing 1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
serac1 (serine active site containing 1)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid|ZFIN)
Drosophila melanogaster (fruit fly):
CG10383
Alliance
DIOPT (OMA|OrthoFinder|OrthoInspector|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
F17H10.1
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
CG5455
Alliance
DIOPT (Ensembl Compara|OrthoFinder|PANTHER|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):
serac1
Alliance
DIOPT (Ensembl Compara|OMA|OrthoFinder)
Related Pseudogenes:
Gm18591
Latest Assembly:
GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 17 6,090,846 - 6,130,064 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 17 6,092,471 - 6,130,016 (-) Ensembl GRCm39 Ensembl GRCm38 17 6,040,571 - 6,079,789 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 17 6,042,196 - 6,079,741 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 17 6,040,571 - 6,079,739 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 17 5,997,200 - 6,036,209 (-) NCBI MGSCv36 mm8 Celera 17 6,578,352 - 6,617,525 (-) NCBI Celera Cytogenetic Map 17 A1 NCBI cM Map 17 3.67 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Serac1 Mouse (-)-epigallocatechin 3-gallate multiple interactions ISO RGD:1349770 6480464 [potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of SERAC1 mRNA CTD PMID:22079256 Serac1 Mouse 2,2',4,4'-Tetrabromodiphenyl ether multiple interactions EXP 6480464 [Flame Retardants results in increased abundance of 2,2',4,4'-tetrabromodiphenyl ether] which results in increased expression of more ... CTD PMID:38995820 Serac1 Mouse 2,3,7,8-tetrachlorodibenzodioxine increases expression ISO RGD:1565064 6480464 Tetrachlorodibenzodioxin results in increased expression of SERAC1 mRNA CTD PMID:33387578 Serac1 Mouse 2-hydroxypropanoic acid decreases expression ISO RGD:1349770 6480464 Lactic Acid results in decreased expression of SERAC1 mRNA CTD PMID:30851411 Serac1 Mouse acrolein multiple interactions ISO RGD:1349770 6480464 [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of more ... CTD PMID:32699268 Serac1 Mouse aflatoxin B1 increases expression EXP 6480464 Aflatoxin B1 results in increased expression of SERAC1 mRNA CTD PMID:19770486 Serac1 Mouse all-trans-retinoic acid decreases expression ISO RGD:1349770 6480464 Tretinoin results in decreased expression of SERAC1 mRNA CTD PMID:33167477 Serac1 Mouse alpha-pinene multiple interactions ISO RGD:1349770 6480464 [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of more ... CTD PMID:32699268 Serac1 Mouse amosite asbestos increases methylation ISO RGD:1349770 6480464 Asbestos, Amosite results in increased methylation of SERAC1 promoter CTD PMID:29626692 Serac1 Mouse antirheumatic drug increases expression ISO RGD:1349770 6480464 Antirheumatic Agents results in increased expression of SERAC1 mRNA CTD PMID:24449571 Serac1 Mouse aristolochic acid A decreases expression ISO RGD:1349770 6480464 aristolochic acid I results in decreased expression of SERAC1 mRNA CTD PMID:33212167 Serac1 Mouse arsane affects methylation ISO RGD:1349770 6480464 Arsenic affects the methylation of SERAC1 gene CTD PMID:25304211 Serac1 Mouse arsenic atom affects methylation ISO RGD:1349770 6480464 Arsenic affects the methylation of SERAC1 gene CTD PMID:25304211 Serac1 Mouse benzo[a]pyrene increases expression ISO RGD:1349770 6480464 Benzo(a)pyrene results in increased expression of SERAC1 mRNA CTD PMID:22316170 Serac1 Mouse beta-lapachone increases expression ISO RGD:1349770 6480464 beta-lapachone results in increased expression of SERAC1 mRNA CTD PMID:38218311 Serac1 Mouse bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of SERAC1 mRNA CTD PMID:32156529 Serac1 Mouse CGP 52608 multiple interactions ISO RGD:1349770 6480464 CGP 52608 promotes the reaction [RORA protein binds to SERAC1 gene] CTD PMID:28238834 Serac1 Mouse choline multiple interactions EXP 6480464 [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation more ... CTD PMID:20938992 Serac1 Mouse crocidolite asbestos decreases expression EXP 6480464 Asbestos, Crocidolite results in decreased expression of SERAC1 mRNA CTD PMID:29279043 Serac1 Mouse cyclosporin A increases expression ISO RGD:1349770 6480464 Cyclosporine results in increased expression of SERAC1 mRNA CTD PMID:25562108 Serac1 Mouse cyclosporin A increases methylation ISO RGD:1349770 6480464 Cyclosporine results in increased methylation of SERAC1 promoter CTD PMID:27989131 Serac1 Mouse dorsomorphin multiple interactions ISO RGD:1349770 6480464 [NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Serac1 Mouse ethyl methanesulfonate increases expression ISO RGD:1349770 6480464 Ethyl Methanesulfonate results in increased expression of SERAC1 mRNA CTD PMID:23649840 Serac1 Mouse folic acid multiple interactions EXP 6480464 [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation more ... CTD PMID:20938992 Serac1 Mouse folic acid decreases expression ISO RGD:1349770 6480464 Folic Acid results in decreased expression of SERAC1 mRNA CTD PMID:21867686 Serac1 Mouse genistein increases expression EXP 6480464 Genistein results in increased expression of SERAC1 mRNA CTD PMID:32186404 Serac1 Mouse gentamycin increases expression ISO RGD:1565064 6480464 Gentamicins results in increased expression of SERAC1 mRNA CTD PMID:33387578 Serac1 Mouse hydrogen peroxide increases expression ISO RGD:1349770 6480464 Hydrogen Peroxide results in increased expression of SERAC1 mRNA CTD PMID:18951874 Serac1 Mouse L-methionine multiple interactions EXP 6480464 [Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation more ... CTD PMID:20938992 Serac1 Mouse methyl methanesulfonate increases expression ISO RGD:1349770 6480464 Methyl Methanesulfonate results in increased expression of SERAC1 mRNA CTD PMID:23649840 Serac1 Mouse ozone multiple interactions ISO RGD:1349770 6480464 [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of more ... CTD PMID:32699268 Serac1 Mouse paracetamol increases expression ISO RGD:1349770 6480464 Acetaminophen results in increased expression of SERAC1 mRNA CTD PMID:29067470 Serac1 Mouse paracetamol increases expression ISO RGD:1565064 6480464 Acetaminophen results in increased expression of SERAC1 mRNA CTD PMID:33387578 Serac1 Mouse perfluorohexanesulfonic acid decreases expression ISO RGD:1349770 6480464 perfluorohexanesulfonic acid results in decreased expression of SERAC1 mRNA CTD PMID:25812627 Serac1 Mouse perfluorononanoic acid decreases expression ISO RGD:1349770 6480464 perfluoro-n-nonanoic acid results in decreased expression of SERAC1 mRNA CTD PMID:25812627 Serac1 Mouse perfluorooctane-1-sulfonic acid decreases expression ISO RGD:1349770 6480464 perfluorooctane sulfonic acid results in decreased expression of SERAC1 mRNA CTD PMID:25812627 Serac1 Mouse perfluorooctanoic acid decreases expression ISO RGD:1349770 6480464 perfluorooctanoic acid results in decreased expression of SERAC1 mRNA CTD PMID:25812627 Serac1 Mouse phenylmercury acetate decreases expression ISO RGD:1349770 6480464 Phenylmercuric Acetate results in decreased expression of SERAC1 mRNA CTD PMID:26272509 Serac1 Mouse phenylmercury acetate multiple interactions ISO RGD:1349770 6480464 [NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Serac1 Mouse pirinixic acid multiple interactions EXP 6480464 [pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ... CTD PMID:19710929 Serac1 Mouse potassium chromate decreases expression ISO RGD:1349770 6480464 potassium chromate(VI) results in decreased expression of SERAC1 mRNA CTD PMID:22079256 Serac1 Mouse potassium chromate multiple interactions ISO RGD:1349770 6480464 [potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of SERAC1 mRNA CTD PMID:22079256 Serac1 Mouse quercetin affects expression ISO RGD:1349770 6480464 Quercetin affects the expression of SERAC1 mRNA CTD PMID:21632981 Serac1 Mouse rac-lactic acid decreases expression ISO RGD:1349770 6480464 Lactic Acid results in decreased expression of SERAC1 mRNA CTD PMID:30851411 Serac1 Mouse SB 431542 multiple interactions ISO RGD:1349770 6480464 [NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ... CTD PMID:27188386 Serac1 Mouse sodium arsenite affects methylation ISO RGD:1349770 6480464 sodium arsenite affects the methylation of SERAC1 gene CTD PMID:28589171 Serac1 Mouse sodium arsenite decreases expression ISO RGD:1349770 6480464 sodium arsenite results in decreased expression of SERAC1 mRNA CTD PMID:34032870 Serac1 Mouse sunitinib increases expression ISO RGD:1349770 6480464 Sunitinib results in increased expression of SERAC1 mRNA CTD PMID:31533062 Serac1 Mouse tetrachloromethane affects expression EXP 6480464 Carbon Tetrachloride affects the expression of SERAC1 mRNA CTD PMID:17484886 Serac1 Mouse titanium dioxide decreases expression EXP 6480464 titanium dioxide results in decreased expression of SERAC1 mRNA CTD PMID:29264374 Serac1 Mouse titanium dioxide increases methylation EXP 6480464 titanium dioxide results in increased methylation of SERAC1 gene CTD PMID:35295148 Serac1 Mouse trichostatin A decreases expression ISO RGD:1349770 6480464 trichostatin A results in decreased expression of SERAC1 mRNA CTD PMID:24935251|PMID:26272509 Serac1 Mouse trichostatin A affects expression ISO RGD:1349770 6480464 trichostatin A affects the expression of SERAC1 mRNA CTD PMID:28542535 Serac1 Mouse valproic acid affects expression ISO RGD:1349770 6480464 Valproic Acid affects the expression of SERAC1 mRNA CTD PMID:25979313
Serac1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 17 6,090,846 - 6,130,064 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 17 6,092,471 - 6,130,016 (-) Ensembl GRCm39 Ensembl GRCm38 17 6,040,571 - 6,079,789 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 17 6,042,196 - 6,079,741 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 17 6,040,571 - 6,079,739 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 17 5,997,200 - 6,036,209 (-) NCBI MGSCv36 mm8 Celera 17 6,578,352 - 6,617,525 (-) NCBI Celera Cytogenetic Map 17 A1 NCBI cM Map 17 3.67 NCBI
SERAC1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 158,109,519 - 158,168,262 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 158,109,519 - 158,168,280 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 158,530,551 - 158,589,294 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 158,450,535 - 158,509,257 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 6 158,500,957 - 158,559,678 NCBI Celera 6 159,179,384 - 159,237,341 (-) NCBI Celera Cytogenetic Map 6 q25.3 NCBI HuRef 6 156,002,634 - 156,060,523 (-) NCBI HuRef CHM1_1 6 158,792,759 - 158,851,576 (-) NCBI CHM1_1 T2T-CHM13v2.0 6 159,355,719 - 159,413,646 (-) NCBI T2T-CHM13v2.0
Serac1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 49,025,845 - 49,061,853 (-) NCBI GRCr8 mRatBN7.2 1 46,620,741 - 46,656,801 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 46,620,498 - 46,656,727 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 47,169,736 - 47,205,743 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 53,156,998 - 53,193,005 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 47,245,169 - 47,281,171 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 46,934,499 - 46,978,264 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 46,942,192 - 46,978,261 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 48,237,998 - 48,280,802 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 40,824,256 - 40,853,956 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 1 42,307,174 - 42,346,125 (-) NCBI Celera Cytogenetic Map 1 q11 NCBI
Serac1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955439 4,234,382 - 4,291,941 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955439 4,234,440 - 4,291,947 (+) NCBI ChiLan1.0 ChiLan1.0
SERAC1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 5 178,223,781 - 178,281,633 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 6 176,127,416 - 176,185,092 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 6 156,009,815 - 156,067,675 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 6 158,068,838 - 158,126,603 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 6 158,068,838 - 158,126,603 (-) Ensembl panpan1.1 panPan2
SERAC1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 1 47,599,802 - 47,651,034 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 1 47,578,472 - 47,669,494 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 1 48,443,793 - 48,494,982 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 1 47,786,357 - 47,837,738 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 1 47,785,904 - 47,855,825 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 1 47,664,618 - 47,715,863 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 1 47,534,505 - 47,585,857 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 1 48,093,623 - 48,144,970 (-) NCBI UU_Cfam_GSD_1.0
Serac1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404946 142,669,780 - 142,731,853 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936489 9,918,785 - 9,983,840 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936489 9,911,484 - 9,983,826 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SERAC1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 1 8,935,091 - 9,002,770 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 1 8,935,081 - 9,002,774 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 1 10,907,467 - 10,971,882 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SERAC1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 13 85,711,101 - 85,770,010 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 13 85,710,061 - 85,769,961 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666040 58,080,367 - 58,139,831 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Serac1
.
Predicted Target Of
Count of predictions: 1901 Count of miRNA genes: 759 Interacting mature miRNAs: 964 Transcripts: ENSMUST00000024570, ENSMUST00000097432, ENSMUST00000139542, ENSMUST00000144284, ENSMUST00000153325 Prediction methods: Microtar, Miranda, Pita, Rnahybrid, Targetscan Result types: miRGate_prediction
4141215 Mnic1_m macronutrient intake, carbohydrate 1 (mouse) Not determined 4854752 45670266 Mouse 12910982 Pifs2_m peptide-induced fatal syndrome 2 (mouse) 17 1 26189355 Mouse 12910528 Nrq1_m noise-induced hearing loss resistant QTL 1 (mouse) 17 1 29198453 Mouse 1357680 Idd23_m insulin dependent diabetes susceptibility 23 (mouse) Not determined 17 3974890 26401133 Mouse 1302196 Myaa1_m modifier of Yaa 1 (mouse) Not determined 17 1 20975022 Mouse 1302100 Circp2_m circadian photosensitivity 2 (mouse) Not determined 17 1 29198453 Mouse 4141272 Tfv1_m total food volume 1 (mouse) Not determined 4854752 65637357 Mouse 1300890 Bhr3_m bronchial hyperresponsiveness 3 (mouse) Not determined 17 3974890 48866091 Mouse 1357789 Kdnw3_m kidney weight 3 (mouse) Not determined 17 4854752 47885665 Mouse 10412276 Leci2_m leukocyte endothelial cell interactions 2 (mouse) Not determined 17 3348175 37348299 Mouse 1300706 Alan1_m alloantigen response 1 (mouse) Not determined 17 4854752 46469702 Mouse 1300613 Pcyts4_m plasmacytoma susceptibility 4 (mouse) Not determined 17 1 27081639 Mouse 1357452 Vtbt18_m vertebral trabecular bone trait 18 (mouse) Not determined 17 1 20975022 Mouse 1357902 Obq19_m obesity QTL 19 (mouse) Not determined 17 1 25662076 Mouse 1357743 Lith3_m lithogenic gene 3 (mouse) Not determined 17 1 26194456 Mouse 12910527 Nrq1a_m noise-induced hearing loss resistant QTL 1a (mouse) 17 1 29198453 Mouse 1301615 Cfld3_m cystic fibrosis lung disease 3 (mouse) Not determined 17 1 27081639 Mouse 1301327 Lmr7_m leishmaniasis resistance 7 (mouse) Not determined 17 4854752 27715939 Mouse 13524851 Asrq8_m acoustic startle response 8 (mouse) 17 1 31030170 Mouse
C76921
Mouse Assembly Chr Position (strand) Source JBrowse Cytogenetic Map 17 A1 UniSTS cM Map 17 3.3 UniSTS Whitehead/MRC_RH 17 127.75 UniSTS
RH126060
Mouse Assembly Chr Position (strand) Source JBrowse GRCm38 17 6,040,575 - 6,040,775 UniSTS GRCm38 MGSCv37 17 6,040,575 - 6,040,775 UniSTS GRCm37 Celera 17 6,578,356 - 6,578,556 UniSTS Cytogenetic Map 17 A2-A3.1 UniSTS Cytogenetic Map 17 A1 UniSTS cM Map 17 3.3 UniSTS cM Map 17 5.0 UniSTS Whitehead/MRC_RH 17 122.62 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSMUST00000024570 ⟹ ENSMUSP00000024570
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 17 6,094,341 - 6,130,002 (-) Ensembl GRCm38.p6 Ensembl 17 6,044,066 - 6,079,727 (-) Ensembl
Ensembl Acc Id:
ENSMUST00000097432 ⟹ ENSMUSP00000095043
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 17 6,092,471 - 6,130,016 (-) Ensembl GRCm38.p6 Ensembl 17 6,042,196 - 6,079,741 (-) Ensembl
Ensembl Acc Id:
ENSMUST00000139542
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 17 6,115,224 - 6,130,008 (-) Ensembl GRCm38.p6 Ensembl 17 6,064,949 - 6,079,733 (-) Ensembl
Ensembl Acc Id:
ENSMUST00000144284
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 17 6,100,302 - 6,101,663 (-) Ensembl GRCm38.p6 Ensembl 17 6,050,027 - 6,051,388 (-) Ensembl
Ensembl Acc Id:
ENSMUST00000153325
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 Ensembl 17 6,094,179 - 6,100,330 (-) Ensembl GRCm38.p6 Ensembl 17 6,043,904 - 6,050,055 (-) Ensembl
RefSeq Acc Id:
NM_001111017 ⟹ NP_001104487
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,090,846 - 6,130,014 (-) NCBI GRCm38 17 6,040,571 - 6,079,739 (-) NCBI MGSCv37 17 6,040,571 - 6,079,739 (-) RGD Celera 17 6,578,352 - 6,617,525 (-) RGD cM Map 17 ENTREZGENE
Sequence:
GGTCACGTGCTCACTGCCGCTGGGTTAGGGCGCAGGTTACTAGTGGTGGCGGAGGGTGAGCTCTGTAGCCGGCGGAGTCCACCGCGAGCCGTCCGGGCTGCCAGAGTCATTGCGCCGGCAGGATGTCC
hide sequence
RefSeq Acc Id:
NM_001360148 ⟹ NP_001347077
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,090,846 - 6,130,014 (-) NCBI GRCm38 17 6,040,571 - 6,079,739 (-) NCBI
Sequence:
GGTCACGTGCTCACTGCCGCTGGGTTAGGGCGCAGGTTACTAGTGGTGGCGGAGGGTGAGCTCTGTAGCCGGCGGAGTCCACCGCGAGCCGTCCGGGCTGCCAGAGTCATTGCGCCGGCAGGATGTCC
hide sequence
RefSeq Acc Id:
NM_177311 ⟹ NP_796285
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,090,846 - 6,130,014 (-) NCBI GRCm38 17 6,040,571 - 6,079,739 (-) NCBI MGSCv37 17 6,040,571 - 6,079,739 (-) RGD Celera 17 6,578,352 - 6,617,525 (-) RGD cM Map 17 ENTREZGENE
Sequence:
GGTCACGTGCTCACTGCCGCTGGGTTAGGGCGCAGGTTACTAGTGGTGGCGGAGGGTGAGCTCTGTAGCCGGCGGAGTCCACCGCGAGCCGTCCGGGCTGCCAGAGTCATTGCGCCGGCAGGATGTCC
hide sequence
RefSeq Acc Id:
XM_006523234 ⟹ XP_006523297
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,092,152 - 6,130,063 (-) NCBI GRCm38 17 6,044,058 - 6,079,789 (-) NCBI
Sequence:
CGACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCACT
hide sequence
RefSeq Acc Id:
XM_006523235 ⟹ XP_006523298
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,092,152 - 6,130,063 (-) NCBI GRCm38 17 6,044,066 - 6,079,789 (-) NCBI
Sequence:
CGACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCACTGCCGCTGGGTTAGGGCGCAGGTTACTAGTGGTGGCGGAGGGTGAGCTCTGTAGCCGGCGGAGTC
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RefSeq Acc Id:
XM_006523236 ⟹ XP_006523299
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,092,152 - 6,130,062 (-) NCBI GRCm38 17 6,044,058 - 6,079,788 (-) NCBI
Sequence:
GACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCACTGCCGCTGGGTTAGGGCGCAGGTTACTAGTGGTGGCGGAGGGTGAGCTCTGTAGCCGGCGGAGTCC
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RefSeq Acc Id:
XM_030249847 ⟹ XP_030105707
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,092,152 - 6,130,063 (-) NCBI GRCm38 17 6,044,058 - 6,079,741 (-) NCBI
Sequence:
CGACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCACT
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RefSeq Acc Id:
XM_036160650 ⟹ XP_036016543
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,092,152 - 6,130,064 (-) NCBI
Sequence:
GCGACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCAC
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RefSeq Acc Id:
XM_036160651 ⟹ XP_036016544
Type:
CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,092,152 - 6,130,062 (-) NCBI
Sequence:
GACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCACTG
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RefSeq Acc Id:
XR_003952135
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,090,846 - 6,130,064 (-) NCBI GRCm38 17 6,044,058 - 6,079,789 (-) NCBI
Sequence:
GCGACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCACTGCCGCTGGGTTAGGGCGCAGGTTACTAGTGGTGGCGGAGGGTGAGCTCTGTAGCCGGCGGAGT
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RefSeq Acc Id:
XR_004939540
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,090,846 - 6,130,064 (-) NCBI
Sequence:
GCGACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCACTGCCGCTGGGTTAGGGCGCAGGTTACTAGTGGTGGCGGAGGGTGAGCTCTGTAGCCGGCGGAGT
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RefSeq Acc Id:
XR_004939541
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,090,846 - 6,130,064 (-) NCBI
Sequence:
GCGACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCAC
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RefSeq Acc Id:
XR_004939542
Type:
NON-CODING
Position:
Mouse Assembly Chr Position (strand) Source GRCm39 17 6,090,846 - 6,130,064 (-) NCBI
Sequence:
GCGACTCTCTGGGGCGGGCCCTAAGGGCGGGGTCAAGCCCTCAGAGGCGGGGTCACGTGCTCACTGCCGCTGGGTTAGGGCGCAGGTTACTAGTGGTGGCGGAGGGTGAGCTCTGTAGCCGGCGGAGT
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RefSeq Acc Id:
NP_796285 ⟸ NM_177311
- Peptide Label:
isoform 2
- UniProtKB:
Q3U213 (UniProtKB/Swiss-Prot)
- Sequence:
MSLAAYCVICCRRIGSFAPRSKSRTPWRNIRNIIRFTGSLIVGGSLFITYEVLALKKSLMLDTQVVEREKMKSYIYVHKAPVDRLDNRDSFSTVDIEDHDCAVWLLLRKSREDDLAARLQAVREMSEA
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RefSeq Acc Id:
NP_001104487 ⟸ NM_001111017
- Peptide Label:
isoform 3
- UniProtKB:
Q3TS62 (UniProtKB/Swiss-Prot), Q9D2G7 (UniProtKB/Swiss-Prot), Q3U213 (UniProtKB/Swiss-Prot)
- Sequence:
MSLAAYCVICCRRIGSFAPRSKSRTPWRNIRNIIRFTGSLIVGGSLFITYEVLALKKSLMLDTQVVEREKMKSYIYVHKAPVDRLDNRGIVWQARKELHRAVRKLLAAAAKVLRSPFADSFSTVDIED
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RefSeq Acc Id:
XP_006523299 ⟸ XM_006523236
- Peptide Label:
isoform X5
- Sequence:
MSEAHHWHDYQYRIIAQACDPRTLIGLARSKESDLRFFLPPPPLPSLKEDSSTEEELRHLLASL
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RefSeq Acc Id:
XP_006523297 ⟸ XM_006523234
- Peptide Label:
isoform X1
- Sequence:
MSLAAYCVICCRRIGSFAPRSKSRTPWRNIRNIIRFTGSLIVGGSLFITYEVLALKKSLMLDTQ
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RefSeq Acc Id:
XP_006523298 ⟸ XM_006523235
- Peptide Label:
isoform X3
- Sequence:
MSLAAYCVICCRRIGSFAPRSKSRTPWRNIRNIIRFTGSLIVGGSLFITYEVLALKKSLMLDTQ
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RefSeq Acc Id:
NP_001347077 ⟸ NM_001360148
- Peptide Label:
isoform 4
RefSeq Acc Id:
XP_030105707 ⟸ XM_030249847
- Peptide Label:
isoform X2
Ensembl Acc Id:
ENSMUSP00000095043 ⟸ ENSMUST00000097432
Ensembl Acc Id:
ENSMUSP00000024570 ⟸ ENSMUST00000024570
RefSeq Acc Id:
XP_036016543 ⟸ XM_036160650
- Peptide Label:
isoform X4
RefSeq Acc Id:
XP_036016544 ⟸ XM_036160651
- Peptide Label:
isoform X6
RGD ID: 6828666 Promoter ID: MM_KWN:21960 Type: Non-CpG SO ACC ID: SO:0000170 Source: MPROMDB Tissues & Cell Lines: BoneMarrow_0Hour, Brain, MEF_B6 Transcripts: OTTMUST00000058806 Position: Mouse Assembly Chr Position (strand) Source MGSCv36 17 6,049,581 - 6,050,597 (-) MPROMDB
RGD ID: 6828664 Promoter ID: MM_KWN:21961 Type: Non-CpG SO ACC ID: SO:0000170 Source: MPROMDB Tissues & Cell Lines: BoneMarrow_0Hour, Lung Transcripts: OTTMUST00000058805 Position: Mouse Assembly Chr Position (strand) Source MGSCv36 17 6,051,806 - 6,052,306 (-) MPROMDB
RGD ID: 6828667 Promoter ID: MM_KWN:21962 Type: CpG-Island SO ACC ID: SO:0000170 Source: MPROMDB Tissues & Cell Lines: 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen Transcripts: ENSMUST00000024570, ENSMUST00000097432, ENSMUST00000115780, OTTMUST00000058798, OTTMUST00000058800, OTTMUST00000058803, OTTMUST00000058804, UC008AFX.1, UC008AGB.1 Position: Mouse Assembly Chr Position (strand) Source MGSCv36 17 6,079,534 - 6,080,034 (-) MPROMDB
RGD ID: 13674636 Promoter ID: EPDNEW_M21467 Type: multiple initiation site Name: Serac1_1 Description: Mus musculus serine active site containing 1 , transcript variant2, mRNA. SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Mouse Assembly Chr Position (strand) Source GRCm38 17 6,079,741 - 6,079,801 EPDNEW
