Serac1 (serine active site containing 1) - Rat Genome Database

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Gene: Serac1 (serine active site containing 1) Mus musculus
Analyze
Symbol: Serac1
Name: serine active site containing 1
RGD ID: 1557153
MGI Page MGI
Description: Acts upstream of or within extracellular matrix organization. Located in extracellular matrix. Used to study 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. Orthologous to human SERAC1 (serine active site containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930511N22Rik; D17Ertd141; D17Ertd141e; serine active site-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18591  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,090,846 - 6,130,064 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl176,092,471 - 6,130,016 (-)EnsemblGRCm39 Ensembl
GRCm38176,040,571 - 6,079,789 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,042,196 - 6,079,741 (-)EnsemblGRCm38mm10GRCm38
MGSCv37176,040,571 - 6,079,739 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,997,200 - 6,036,209 (-)NCBIMGSCv36mm8
Celera176,578,352 - 6,617,525 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map173.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:15722415   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:18757743   PMID:18799693   PMID:21267068   PMID:21677750   PMID:28378742   PMID:31138677   PMID:32581705   PMID:35235340   PMID:38355793  


Genomics

Comparative Map Data
Serac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,090,846 - 6,130,064 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl176,092,471 - 6,130,016 (-)EnsemblGRCm39 Ensembl
GRCm38176,040,571 - 6,079,789 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,042,196 - 6,079,741 (-)EnsemblGRCm38mm10GRCm38
MGSCv37176,040,571 - 6,079,739 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,997,200 - 6,036,209 (-)NCBIMGSCv36mm8
Celera176,578,352 - 6,617,525 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map173.67NCBI
SERAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,109,519 - 158,168,262 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,109,519 - 158,168,280 (-)EnsemblGRCh38hg38GRCh38
GRCh376158,530,551 - 158,589,294 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,450,535 - 158,509,257 (-)NCBINCBI36Build 36hg18NCBI36
Build 346158,500,957 - 158,559,678NCBI
Celera6159,179,384 - 159,237,341 (-)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,002,634 - 156,060,523 (-)NCBIHuRef
CHM1_16158,792,759 - 158,851,576 (-)NCBICHM1_1
T2T-CHM13v2.06159,355,719 - 159,413,646 (-)NCBIT2T-CHM13v2.0
Serac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,025,845 - 49,061,853 (-)NCBIGRCr8
mRatBN7.2146,620,741 - 46,656,801 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,620,498 - 46,656,727 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,169,736 - 47,205,743 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,156,998 - 53,193,005 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,245,169 - 47,281,171 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0146,934,499 - 46,978,264 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,942,192 - 46,978,261 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,237,998 - 48,280,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4140,824,256 - 40,853,956 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera142,307,174 - 42,346,125 (-)NCBICelera
Cytogenetic Map1q11NCBI
Serac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554394,234,382 - 4,291,941 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554394,234,440 - 4,291,947 (+)NCBIChiLan1.0ChiLan1.0
SERAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,223,781 - 178,281,633 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16176,127,416 - 176,185,092 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06156,009,815 - 156,067,675 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16158,068,838 - 158,126,603 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6158,068,838 - 158,126,603 (-)Ensemblpanpan1.1panPan2
SERAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,599,802 - 47,651,034 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,578,472 - 47,669,494 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha148,443,793 - 48,494,982 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,786,357 - 47,837,738 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,785,904 - 47,855,825 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,664,618 - 47,715,863 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,534,505 - 47,585,857 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,093,623 - 48,144,970 (-)NCBIUU_Cfam_GSD_1.0
Serac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946142,669,780 - 142,731,853 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364899,918,785 - 9,983,840 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364899,911,484 - 9,983,826 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,935,091 - 9,002,770 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118,935,081 - 9,002,774 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,907,467 - 10,971,882 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11385,711,101 - 85,770,010 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1385,710,061 - 85,769,961 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604058,080,367 - 58,139,831 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Serac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478582,155 - 146,457 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478582,120 - 155,103 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Serac1
947 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1901
Count of miRNA genes:759
Interacting mature miRNAs:964
Transcripts:ENSMUST00000024570, ENSMUST00000097432, ENSMUST00000139542, ENSMUST00000144284, ENSMUST00000153325
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse

Markers in Region
C76921  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A1UniSTS
cM Map173.3UniSTS
Whitehead/MRC_RH17127.75UniSTS
RH126060  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38176,040,575 - 6,040,775UniSTSGRCm38
MGSCv37176,040,575 - 6,040,775UniSTSGRCm37
Celera176,578,356 - 6,578,556UniSTS
Cytogenetic Map17A2-A3.1UniSTS
Cytogenetic Map17A1UniSTS
cM Map173.3UniSTS
cM Map175.0UniSTS
Whitehead/MRC_RH17122.62UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001111017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY197974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY715309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000024570   ⟹   ENSMUSP00000024570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl176,094,341 - 6,130,002 (-)Ensembl
GRCm38.p6 Ensembl176,044,066 - 6,079,727 (-)Ensembl
Ensembl Acc Id: ENSMUST00000097432   ⟹   ENSMUSP00000095043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl176,092,471 - 6,130,016 (-)Ensembl
GRCm38.p6 Ensembl176,042,196 - 6,079,741 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl176,115,224 - 6,130,008 (-)Ensembl
GRCm38.p6 Ensembl176,064,949 - 6,079,733 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl176,100,302 - 6,101,663 (-)Ensembl
GRCm38.p6 Ensembl176,050,027 - 6,051,388 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl176,094,179 - 6,100,330 (-)Ensembl
GRCm38.p6 Ensembl176,043,904 - 6,050,055 (-)Ensembl
RefSeq Acc Id: NM_001111017   ⟹   NP_001104487
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,090,846 - 6,130,014 (-)NCBI
GRCm38176,040,571 - 6,079,739 (-)NCBI
MGSCv37176,040,571 - 6,079,739 (-)RGD
Celera176,578,352 - 6,617,525 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360148   ⟹   NP_001347077
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,090,846 - 6,130,014 (-)NCBI
GRCm38176,040,571 - 6,079,739 (-)NCBI
Sequence:
RefSeq Acc Id: NM_177311   ⟹   NP_796285
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,090,846 - 6,130,014 (-)NCBI
GRCm38176,040,571 - 6,079,739 (-)NCBI
MGSCv37176,040,571 - 6,079,739 (-)RGD
Celera176,578,352 - 6,617,525 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006523234   ⟹   XP_006523297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,092,152 - 6,130,063 (-)NCBI
GRCm38176,044,058 - 6,079,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523235   ⟹   XP_006523298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,092,152 - 6,130,063 (-)NCBI
GRCm38176,044,066 - 6,079,789 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006523236   ⟹   XP_006523299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,092,152 - 6,130,062 (-)NCBI
GRCm38176,044,058 - 6,079,788 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249847   ⟹   XP_030105707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,092,152 - 6,130,063 (-)NCBI
GRCm38176,044,058 - 6,079,741 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160650   ⟹   XP_036016543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,092,152 - 6,130,064 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160651   ⟹   XP_036016544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,092,152 - 6,130,062 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952135
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,090,846 - 6,130,064 (-)NCBI
GRCm38176,044,058 - 6,079,789 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939540
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,090,846 - 6,130,064 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939541
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,090,846 - 6,130,064 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939542
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39176,090,846 - 6,130,064 (-)NCBI
Sequence:
RefSeq Acc Id: NP_796285   ⟸   NM_177311
- Peptide Label: isoform 2
- UniProtKB: Q3U213 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001104487   ⟸   NM_001111017
- Peptide Label: isoform 3
- UniProtKB: Q3TS62 (UniProtKB/Swiss-Prot),   Q9D2G7 (UniProtKB/Swiss-Prot),   Q3U213 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006523299   ⟸   XM_006523236
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006523297   ⟸   XM_006523234
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006523298   ⟸   XM_006523235
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001347077   ⟸   NM_001360148
- Peptide Label: isoform 4
RefSeq Acc Id: XP_030105707   ⟸   XM_030249847
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000095043   ⟸   ENSMUST00000097432
Ensembl Acc Id: ENSMUSP00000024570   ⟸   ENSMUST00000024570
RefSeq Acc Id: XP_036016543   ⟸   XM_036160650
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036016544   ⟸   XM_036160651
- Peptide Label: isoform X6

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U213-F1-model_v2 AlphaFold Q3U213 1-654 view protein structure

Promoters
RGD ID:6828666
Promoter ID:MM_KWN:21960
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   MEF_B6
Transcripts:OTTMUST00000058806
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36176,049,581 - 6,050,597 (-)MPROMDB
RGD ID:6828664
Promoter ID:MM_KWN:21961
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Lung
Transcripts:OTTMUST00000058805
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36176,051,806 - 6,052,306 (-)MPROMDB
RGD ID:6828667
Promoter ID:MM_KWN:21962
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000024570,   ENSMUST00000097432,   ENSMUST00000115780,   OTTMUST00000058798,   OTTMUST00000058800,   OTTMUST00000058803,   OTTMUST00000058804,   UC008AFX.1,   UC008AGB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36176,079,534 - 6,080,034 (-)MPROMDB
RGD ID:13674636
Promoter ID:EPDNEW_M21467
Type:multiple initiation site
Name:Serac1_1
Description:Mus musculus serine active site containing 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38176,079,741 - 6,079,801EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2447813 AgrOrtholog
Ensembl Genes ENSMUSG00000015659 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000024570 ENTREZGENE
  ENSMUST00000024570.6 UniProtKB/Swiss-Prot
  ENSMUST00000097432 ENTREZGENE
  ENSMUST00000097432.10 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
  3.40.50.1820 UniProtKB/Swiss-Prot
InterPro AB_hydrolase UniProtKB/Swiss-Prot
  ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  SERAC1 UniProtKB/Swiss-Prot
KEGG Report mmu:321007 UniProtKB/Swiss-Prot
MGD MGI:2447813 ENTREZGENE
NCBI Gene 321007 ENTREZGENE
PANTHER PROTEIN SERAC1 UniProtKB/Swiss-Prot
  PROTEIN SERAC1 UniProtKB/Swiss-Prot
PhenoGen Serac1 PhenoGen
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
  SSF53474 UniProtKB/Swiss-Prot
UniProt Q3TS62 ENTREZGENE
  Q3U213 ENTREZGENE
  Q9D2G7 ENTREZGENE
  SRAC1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TS62 UniProtKB/Swiss-Prot
  Q9D2G7 UniProtKB/Swiss-Prot