SERAC1 (serine active site containing 1) - Rat Genome Database
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Gene: SERAC1 (serine active site containing 1) Sus scrofa
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Symbol: SERAC1
Name: serine active site containing 1
RGD ID: 14197457
Description: INVOLVED IN extracellular matrix organization (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); Deafness (ortholog); dystonia (ortholog); FOUND IN extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: protein SERAC1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,935,091 - 9,002,770 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118,935,081 - 9,002,774 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,907,467 - 10,971,882 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
SERAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,935,091 - 9,002,770 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118,935,081 - 9,002,774 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,907,467 - 10,971,882 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6158,109,519 - 158,168,280 (-)EnsemblGRCh38hg38GRCh38
GRCh386158,109,515 - 158,168,270 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376158,530,551 - 158,589,294 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh376158,530,536 - 158,589,312 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,450,535 - 158,509,257 (-)NCBINCBI36hg18NCBI36
Build 346158,500,957 - 158,559,678NCBI
Celera6159,179,384 - 159,237,341 (-)NCBI
Cytogenetic Map6q25.3NCBI
HuRef6156,002,634 - 156,060,523 (-)NCBIHuRef
CHM1_16158,792,759 - 158,851,576 (-)NCBICHM1_1
Serac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,090,846 - 6,130,064 (-)NCBIGRCm39mm39
GRCm38176,040,571 - 6,079,789 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,042,196 - 6,079,741 (-)EnsemblGRCm38mm10GRCm38
MGSCv37176,040,571 - 6,079,739 (-)NCBIGRCm37mm9NCBIm37
MGSCv36175,997,200 - 6,036,209 (-)NCBImm8
Celera176,578,352 - 6,617,525 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map173.67NCBI
Serac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2146,620,741 - 46,656,801 (-)NCBI
Rnor_6.0 Ensembl146,942,192 - 46,978,261 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0146,934,499 - 46,978,264 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0148,237,998 - 48,280,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4140,824,256 - 40,853,956 (-)NCBIRGSC3.4rn4RGSC3.4
Celera142,307,174 - 42,346,125 (-)NCBICelera
Cytogenetic Map1q11NCBI
Serac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554394,234,382 - 4,291,941 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554394,234,440 - 4,291,947 (+)NCBIChiLan1.0ChiLan1.0
SERAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16158,068,838 - 158,126,603 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6158,068,838 - 158,126,603 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06156,009,815 - 156,067,675 (-)NCBIMhudiblu_PPA_v0panPan3
SERAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl147,578,472 - 47,669,494 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1147,599,802 - 47,651,034 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Serac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364899,911,484 - 9,983,826 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERAC1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11385,711,101 - 85,770,010 (-)NCBI
ChlSab1.1 Ensembl1385,710,061 - 85,769,961 (-)Ensembl
Serac1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478582,120 - 155,103 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000013465   ⟹   ENSSSCP00000013105
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl18,935,177 - 8,997,346 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039355   ⟹   ENSSSCP00000057859
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl18,935,124 - 9,001,069 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000049688   ⟹   ENSSSCP00000035755
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl18,935,091 - 9,002,770 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071402   ⟹   ENSSSCP00000069873
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl18,949,356 - 9,002,770 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000084018   ⟹   ENSSSCP00000065764
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl18,935,091 - 9,002,770 (+)Ensembl
RefSeq Acc Id: XM_005654352   ⟹   XP_005654409
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.118,935,081 - 9,002,774 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086397   ⟹   XP_020942056
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.118,940,965 - 9,002,774 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086400   ⟹   XP_020942059
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.118,935,096 - 9,002,774 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086405   ⟹   XP_020942064
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.118,935,240 - 9,002,774 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086409   ⟹   XP_020942068
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.118,935,101 - 9,002,774 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002342361
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.118,935,101 - 9,002,774 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005654409   ⟸   XM_005654352
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020942059   ⟸   XM_021086400
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020942068   ⟸   XM_021086409
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020942064   ⟸   XM_021086405
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020942056   ⟸   XM_021086397
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSSSCP00000057859   ⟸   ENSSSCT00000039355
RefSeq Acc Id: ENSSSCP00000035755   ⟸   ENSSSCT00000049688
RefSeq Acc Id: ENSSSCP00000065764   ⟸   ENSSSCT00000084018
RefSeq Acc Id: ENSSSCP00000013105   ⟸   ENSSSCT00000013465
RefSeq Acc Id: ENSSSCP00000069873   ⟸   ENSSSCT00000071402


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012314 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000013105 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000035755 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000057859 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000065764 UniProtKB/TrEMBL
  ENSSSCP00000069873 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013465 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000039355 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000049688 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000071402 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000084018 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
NCBI Gene SERAC1 ENTREZGENE
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF53474 UniProtKB/TrEMBL
UniProt A0A286ZW78_PIG UniProtKB/TrEMBL
  A0A287BNV6_PIG UniProtKB/TrEMBL
  A0A5G2QYB5_PIG UniProtKB/TrEMBL
  A0A5G2R5B0_PIG UniProtKB/TrEMBL
  F1RUK2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:103173 ENTREZGENE