Col1a1 (collagen, type I, alpha 1) - Rat Genome Database

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Gene: Col1a1 (collagen, type I, alpha 1) Mus musculus
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Symbol: Col1a1
Name: collagen, type I, alpha 1
RGD ID: 62109
MGI Page MGI
Description: Enables identical protein binding activity. An extracellular matrix structural constituent. Involved in cellular response to mechanical stimulus and osteoblast differentiation. Acts upstream of or within several processes, including face morphogenesis; intramembranous ossification; and skeletal system morphogenesis. Located in collagen-containing extracellular matrix; cytoplasm; and extracellular space. Part of collagen type I trimer. Is expressed in several structures, including alimentary system; embryo mesenchyme; heart and pericardium; limb; and skeleton. Used to study several diseases, including D-2-hydroxyglutaric aciduria; Diamond-Blackfan anemia; hepatocellular carcinoma; lung cancer (multiple); and osteogenesis imperfecta (multiple). Human ortholog(s) of this gene implicated in several diseases, including Ehlers-Danlos syndrome arthrochalasia type 1; aggressive periodontitis; bone disease (multiple); cutaneous leishmaniasis; and dentinogenesis imperfecta. Orthologous to human COL1A1 (collagen type I alpha 1 chain).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: alpha-1 type 1 collagen; alpha-1 type I collagen; Co; Col; Col1; Col1a-1; Cola-1; Cola1; collagen alpha-1(I) chain; Mov-; Mov-13; Mov13; procollagen, type I, alpha 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,827,050 - 94,843,868 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,827,050 - 94,843,868 (+)EnsemblGRCm39 Ensembl
GRCm381194,936,224 - 94,953,042 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,936,224 - 94,953,042 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,797,584 - 94,813,181 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,752,360 - 94,767,957 (+)NCBIMGSCv36mm8
Celera11104,549,617 - 104,565,301 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
aggressive periodontitis  (ISO)
alcoholic hepatitis  (ISO)
aortic valve insufficiency  (ISO)
Arteriovenous Fistula  (ISO)
asphyxia neonatorum  (ISO)
autoimmune disease  (ISO)
autosomal recessive limb-girdle muscular dystrophy type 2D  (ISO)
beta thalassemia  (ISO)
Bisphosphonate-Associated Osteonecrosis of the Jaw  (ISO)
bladder neck obstruction  (ISO)
Bone Fractures  (ISO)
bone structure disease  (ISO)
Caffey disease  (ISO)
calcinosis  (ISO)
Cardiac Fibrosis  (ISO)
cholangitis  (ISO)
cholestasis  (IEP,ISO)
chronic obstructive pulmonary disease  (ISO)
Chronic Pancreatitis  (ISO)
Combined Osteogenesis Imperfecta and Ehlers-Danlos Syndrome 1  (ISO)
congenital heart disease  (ISO)
connective tissue disease  (ISO)
Contracture  (ISO)
cutaneous leishmaniasis  (ISO)
degenerative disc disease  (ISO)
dentinogenesis imperfecta  (ISO)
dermatofibrosarcoma protuberans  (ISO)
Diabetic Nephropathies  (ISO)
dilated cardiomyopathy  (ISO)
Dissecting Aneurysm  (ISO)
Ehlers-Danlos syndrome  (IAGP,ISO)
Ehlers-Danlos syndrome arthrochalasia type 1  (ISO)
Ehlers-Danlos syndrome arthrochalasia type 2  (ISO)
Ehlers-Danlos syndrome cardiac valvular type  (ISO)
Ehlers-Danlos syndrome classic type 1  (ISO)
end stage renal disease  (ISO)
Experimental Liver Cirrhosis  (ISO)
extrahepatic cholestasis  (ISO)
Femoral Fractures  (ISO)
Fetal Nutrition Disorders  (ISO)
Fibrosis  (ISO)
genetic disease  (ISO)
heart valve disease  (ISO)
hemorrhagic disease  (ISO)
High Myopia  (ISO)
Human Viral Hepatitis  (ISO)
Hypertelorism  (ISO)
hypertension  (ISO)
Hypertensive Nephropathy  (ISO)
hypertrophic cardiomyopathy  (ISO)
Intervertebral Disc Disease  (ISO)
Joint Instability  (ISO)
Keloid  (ISO)
keratoconus  (ISO)
Kidney Reperfusion Injury  (IEP)
Left Ventricular Hypertrophy  (ISO)
Lipodermatosclerosis  (ISO)
liver benign neoplasm  (ISO)
liver cirrhosis  (ISO)
Lung Reperfusion Injury  (IEP)
lupus nephritis  (IDA,IEP,ISO)
Metabolic Bone Diseases  (ISO)
metabolic dysfunction-associated steatohepatitis  (IEP)
metabolic dysfunction-associated steatotic liver disease  (IDA,ISO)
multiple epiphyseal dysplasia 1  (ISO)
multiple sclerosis  (ISO)
Muscle Hypotonia  (ISO)
myocardial infarction  (ISO)
myocarditis  (IDA)
myopia  (IEP)
Nephrogenic Fibrosing Dermopathy  (ISO)
nephrosclerosis  (ISO)
nephrotic syndrome  (ISO)
obesity  (ISO)
ocular hypertension  (IMP)
open-angle glaucoma  (IMP)
oral submucous fibrosis  (ISO)
osteoarthritis  (ISO)
Osteoarthritis, Experimental  (ISO)
Osteoarthritis, Hip  (ISO)
osteochondrodysplasia  (ISO)
osteogenesis imperfecta  (IAGP,IMP,ISO)
osteogenesis imperfecta type 1  (IAGP,ISO)
osteogenesis imperfecta type 2  (IAGP,ISO)
osteogenesis imperfecta type 2C  (ISO)
osteogenesis imperfecta type 3  (IAGP,ISO)
osteogenesis imperfecta type 4  (IAGP,ISO)
osteoporosis  (ISO)
otosclerosis  (ISO)
phenylketonuria  (ISO)
Postmenopausal Osteoporosis  (ISO)
Premature Birth  (ISO)
primary biliary cholangitis  (ISO)
prostate cancer  (ISO)
pulmonary fibrosis  (IEP,ISO)
pulmonary hypertension  (ISO)
rheumatic heart disease  (ISO)
Spontaneous Abortions  (ISO)
Spontaneous Fractures  (ISO)
systemic scleroderma  (ISO)
Tendon Injuries  (ISO)
thoracic aortic aneurysm  (ISO)
Trachomatous Trichiasis  (ISO)
trichodontoosseous syndrome  (ISO)
Tubulointerstitial Fibrosis  (IEP)
ulcerative colitis  (ISO)
ureteral obstruction  (ISO)
Ventral Hernia  (ISO)
Wiedemann-Rautenstrauch syndrome  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(+)-Tetrandrine  (ISO)
(-)-epigallocatechin 3-gallate  (EXP,ISO)
(-)-selegiline  (EXP)
(1->4)-beta-D-glucan  (EXP)
(2R,4R)-1-[(2S)-5-(diaminomethylideneamino)-2-[(3-methyl-1,2,3,4-tetrahydroquinolin-8-yl)sulfonylamino]-1-oxopentyl]-4-methyl-2-piperidinecarboxylic acid  (EXP)
(R)-carnitine  (ISO)
(R)-lipoic acid  (EXP,ISO)
(R)-noradrenaline  (EXP,ISO)
(S)-colchicine  (EXP)
(S)-nicotine  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
1-naphthyl isothiocyanate  (EXP,ISO)
1-stearoyl-2-arachidonoyl-sn-glycerol  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (EXP,ISO)
2-amino-2-deoxy-D-galactopyranose  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-butoxyethanol  (EXP)
2-hydroxyethyl methacrylate  (ISO)
2-trans,6-trans,10-trans-geranylgeranyl diphosphate  (ISO)
20-HETE  (ISO)
24,25-Dihydroxyvitamin D  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3,7-dihydropurine-6-thione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3-methyladenine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5'-S-methyl-5'-thioadenosine  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (EXP)
5-Hydroxycapric acid  (EXP)
6-propyl-2-thiouracil  (ISO)
6alpha-methylprednisolone  (ISO)
8'-apo-beta,psi-caroten-8'-al  (ISO)
9,10-epoxy-12-octadecenoic acid  (EXP)
9-cis-retinoic acid  (ISO)
acetaldehyde  (EXP,ISO)
acetic acid  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
Activin A  (ISO)
adenine  (EXP,ISO)
aflatoxin B1  (ISO)
AICA ribonucleotide  (ISO)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (ISO)
aldosterone  (ISO)
Alisol B  (EXP)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-4-oxoretinol  (ISO)
all-trans-retinoic acid  (EXP,ISO)
all-trans-retinol  (EXP,ISO)
allyl isothiocyanate  (EXP)
Allylamine  (ISO)
alpha-pinene  (ISO)
aluminium atom  (EXP)
aluminium oxide  (ISO)
aluminium(0)  (EXP)
AM-251  (ISO)
ambroxol  (ISO)
aminoguanidine  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
amlodipine  (ISO)
Ammothamnine  (EXP)
amosite asbestos  (ISO)
amphetamine  (ISO)
amphibole asbestos  (EXP)
andrographolide  (EXP,ISO)
angiotensin II  (EXP)
anthocyanin  (ISO)
antimycin A  (ISO)
Archazolid B  (ISO)
argatroban  (EXP)
arsenous acid  (EXP,ISO)
atorvastatin calcium  (ISO)
ATP  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
azelastine  (ISO)
baicalein  (EXP,ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
Benzo[ghi]perylene  (EXP)
berberine  (EXP,ISO)
beta-carotene  (ISO)
beta-D-glucosamine  (ISO)
beta-naphthoflavone  (EXP,ISO)
bezafibrate  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (EXP,ISO)
boron atom  (ISO)
boron nitride  (ISO)
BQ 123  (EXP)
bromochloroacetic acid  (EXP)
bucladesine  (ISO)
busulfan  (ISO)
butanal  (ISO)
C.I. Natural Red 20  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP,ISO)
calcitriol  (EXP,ISO)
calcium dichloride  (ISO)
calcium dihydroxide  (ISO)
calcium silicate  (EXP)
camostat  (ISO)
cannabidiol  (ISO)
cantharidin  (EXP)
capsaicin  (ISO)
carbamazepine  (ISO)
Carbaprostacyclin  (ISO)
carbon nanotube  (EXP,ISO)
carmustine  (ISO)
carvedilol  (ISO)
casticin  (ISO)
celastrol  (ISO)
celecoxib  (ISO)
ceruletide  (EXP,ISO)
chenodeoxycholic acid  (EXP,ISO)
chloramphenicol  (ISO)
chlorogenic acid  (ISO)
chlorothalonil  (ISO)
chlorpromazine  (EXP)
chlorpyrifos  (ISO)
cholate  (ISO)
choline  (EXP,ISO)
chromium(6+)  (EXP)
chrysene  (EXP)
ciglitazone  (ISO)
cisplatin  (ISO)
clodronic acid  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
Clofop  (ISO)
clorgyline  (EXP)
clothianidin  (ISO)
clotrimazole  (ISO)
cocaine  (ISO)
coenzyme Q10  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
cordycepin  (ISO)
cortisol  (ISO)
crocidolite asbestos  (EXP,ISO)
cucurbitacin B  (EXP)
cucurbitacin E  (ISO)
Cuprizon  (ISO)
curcumin  (EXP,ISO)
cycloheximide  (EXP)
cyclosporin A  (EXP,ISO)
cystamine  (ISO)
cytarabine  (ISO)
cytochalasin D  (ISO)
D-glucose  (ISO)
DDT  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
diazepam  (ISO)
diazoxide  (EXP)
Didecyldimethylammonium  (EXP,ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (EXP)
diiodine  (ISO)
diltiazem  (EXP)
Dimerumic acid  (EXP)
dimethyl sulfoxide  (ISO)
dimethylarsinic acid  (ISO)
dimethylarsinous acid  (ISO)
diminazene diaceturate  (ISO)
Diosbulbin B  (EXP)
dioxygen  (EXP,ISO)
dipyridamole  (ISO)
diquat  (EXP)
disodium selenite  (EXP)
disulfiram  (ISO)
diuron  (ISO)
divanadium pentaoxide  (ISO)
dizocilpine maleate  (ISO)
dorsomorphin  (ISO)
doxazosin  (ISO)
doxorubicin  (EXP,ISO)
EC 3.4.15.1 (peptidyl-dipeptidase A) inhibitor  (ISO)
edaravone  (EXP)
elemental boron  (ISO)
elemental selenium  (EXP)
emodin  (ISO)
enalapril  (EXP)
endosulfan  (ISO)
entinostat  (EXP,ISO)
enzacamene  (ISO)
epalrestat  (EXP)
eplerenone  (ISO)
eprosartan  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
ethylisopropylamiloride  (ISO)
excitatory amino acid agonist  (ISO)
fasudil  (EXP)
fenofibrate  (EXP,ISO)
fenvalerate  (ISO)
ferric ammonium citrate  (EXP)
fingolimod hydrochloride  (EXP)
fisetin  (ISO)
folic acid  (EXP)
folpet  (EXP)
fomepizole  (ISO)
fonofos  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
Fulvic acid  (EXP)
fumonisin B1  (EXP)
furan  (ISO)
gefitinib  (EXP)
gemcitabine  (ISO)
genistein  (EXP,ISO)
geraniol  (ISO)
glucagon  (EXP)
glucose  (ISO)
glyburide  (EXP)
glycerol 2-phosphate  (EXP,ISO)
glycyrrhetinate  (EXP)
glycyrrhetinic acid  (EXP)
glyoxal  (ISO)
glyphosate  (EXP)
gold atom  (EXP)
gold(0)  (EXP)
griseofulvin  (EXP)
guaiazulene  (ISO)
guggulsterone  (EXP)
GW 4064  (ISO)
heptachlor  (ISO)
hesperetin  (ISO)
Hexachloro-1,3-butadiene  (ISO)
hexadecanoic acid  (EXP,ISO)
Honokiol  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroquinone  (ISO)
Icaritin  (EXP,ISO)
Ile(5)-angiotensin II  (EXP)
indole-3-methanol  (ISO)
indometacin  (ISO)
iron atom  (ISO)
iron dextran  (EXP)
iron(0)  (ISO)
iron(III) nitrilotriacetate  (ISO)
isoflavones  (ISO)
isoprenaline  (EXP,ISO)
isorhamnetin  (EXP,ISO)
isotretinoin  (ISO)
ivermectin  (EXP)
JTE-013  (ISO)
kainic acid  (EXP)
ketoconazole  (ISO)
L-ascorbic acid  (EXP,ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-cysteine  (ISO)
L-methionine  (EXP,ISO)
lead diacetate  (ISO)
lead(0)  (EXP)
leukotriene B4  (EXP)
levonorgestrel  (ISO)
linoleic acid  (EXP)
lipoic acid  (EXP,ISO)
lipopolysaccharide  (EXP,ISO)
lipoxin A4  (EXP)
lithocholic acid  (EXP)
losartan  (EXP,ISO)
LY-2157299  (EXP)
magnesium atom  (ISO)
malonaldehyde  (ISO)
maneb  (EXP)
mangiferin  (ISO)
manidipine  (ISO)
maraviroc  (EXP)
marinobufagenin  (ISO)
melatonin  (ISO)
menadione  (ISO)
menaquinone  (ISO)
mercaptopurine  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylmercury(1+)  (ISO)
methylparaben  (ISO)
metoprolol  (EXP,ISO)
mevalonic acid  (ISO)
miconazole  (EXP)
microcystin-LR  (EXP,ISO)
mifepristone  (ISO)
mirtazapine  (EXP,ISO)
monocrotaline  (ISO)
monosodium L-glutamate  (ISO)
Morroniside  (ISO)
myo-inositol hexakisphosphate  (ISO)
myricitrin  (EXP,ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-acetyl-1,4-benzoquinone imine  (ISO)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
N-nitrosomorpholine  (ISO)
N-oleoyldopamine  (ISO)
N-palmitoyl dopamine  (ISO)
N-tosyl-L-phenylalanyl chloromethyl ketone  (ISO)
naphthalene  (EXP)
naringin  (EXP)
neoeriocitrin  (EXP)
nickel atom  (ISO)
nickel sulfate  (EXP)
niclosamide  (EXP,ISO)
nicotinamide  (EXP,ISO)
nicotine  (EXP,ISO)
nimodipine  (EXP)
nitrofen  (ISO)
obeticholic acid  (EXP,ISO)
okadaic acid  (ISO)
olanzapine  (ISO)
olaparib  (EXP)
oleamide  (ISO)
oleanolic acid  (ISO)
oleic acid  (ISO)
Olmesartan medoxomil  (ISO)
Osajin  (ISO)
ouabain  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
pamidronate  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
parathion  (ISO)
paricalcitol  (ISO)
pentanal  (ISO)
Pentoxifylline  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
permethrin  (ISO)
phenobarbital  (ISO)
phenol  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (ISO)
PhIP  (ISO)
phosphatidylcholine  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
picoxystrobin  (ISO)
pirfenidone  (EXP,ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
Plantamajoside  (EXP)
poly(ethylene)  (ISO)
poly(guanylic acid)  (ISO)
Pomiferin  (ISO)
potassium dichromate  (EXP,ISO)
prednisolone  (ISO)
progesterone  (EXP,ISO)
propanal  (ISO)
prostaglandin E2  (ISO)
Ptaquiloside  (EXP)
puerarin  (EXP)
purine-6-thiol  (ISO)
pyrazinecarboxamide  (ISO)
pyrogallol  (EXP)
pyrrolidine dithiocarbamate  (ISO)
quartz  (EXP,ISO)
quercetin  (EXP,ISO)
ramipril  (ISO)
Rebamipide  (ISO)
resveratrol  (EXP,ISO)
rifaximin  (ISO)
rimonabant  (ISO)
rosmarinic acid  (ISO)
rotenone  (ISO)
rottlerin  (ISO)
rutin  (ISO)
S-adenosyl-L-homocysteine  (ISO)
S-adenosyl-L-methioninate  (ISO)
S-adenosyl-L-methionine  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
Sanggenon C  (EXP)
saralasin  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
selenium atom  (EXP)
serpentine asbestos  (EXP)
Shikonin  (ISO)
sildenafil citrate  (EXP)
silibinin  (ISO)
silicon atom  (EXP)
silicon dioxide  (EXP,ISO)
simvastatin  (EXP,ISO)
Sinomenine  (ISO)
sirolimus  (EXP,ISO)
sirtinol  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium aurothiomalate  (ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
sorafenib  (ISO)
sphingosine 1-phosphate  (ISO)
stattic  (EXP,ISO)
streptozocin  (EXP)
sulfadimethoxine  (ISO)
sulfasalazine  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
T-2 toxin  (EXP)
tacrolimus hydrate  (EXP,ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
teprenone  (EXP)
terbufos  (ISO)
testosterone  (EXP,ISO)
testosterone enanthate  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP,ISO)
tetramethylpyrazine  (EXP,ISO)
Tetramethylthiourea  (ISO)
tetraphene  (EXP)
tetrathiomolybdate(2-)  (ISO)
thalidomide  (ISO)
theophylline  (ISO)
thioacetamide  (EXP,ISO)
thymoquinone  (EXP,ISO)
titanium atom  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
topotecan  (ISO)
tranexamic acid  (EXP)
tributylstannane  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (EXP,ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (EXP,ISO)
uranium atom  (EXP)
valproic acid  (EXP,ISO)
valsartan  (EXP)
vanadium atom  (ISO)
vanadium(0)  (ISO)
verapamil  (EXP,ISO)
vildagliptin  (EXP)
vitamin D  (EXP,ISO)
vitamin E  (ISO)
vitamin K  (ISO)
warfarin  (EXP,ISO)
Y-27632  (EXP,ISO)
zinc atom  (EXP,ISO)
zinc dichloride  (EXP)
zinc sulfate  (EXP)
zinc(0)  (EXP,ISO)
zoledronic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
blood vessel development  (IBA,IMP,ISO)
bone trabecula formation  (IGI)
cartilage development involved in endochondral bone morphogenesis  (IMP)
cellular response to amino acid stimulus  (IDA)
cellular response to epidermal growth factor stimulus  (ISO)
cellular response to fibroblast growth factor stimulus  (ISO)
cellular response to fluoride  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to mechanical stimulus  (IEP,ISO)
cellular response to retinoic acid  (ISO)
cellular response to transforming growth factor beta stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
cellular response to vitamin E  (ISO)
collagen biosynthetic process  (ISO)
collagen fibril organization  (ISO,NAS)
collagen-activated tyrosine kinase receptor signaling pathway  (ISO)
embryonic skeletal system development  (ISO)
endochondral ossification  (IMP)
extracellular matrix organization  (IBA)
face morphogenesis  (IGI)
intramembranous ossification  (IGI)
negative regulation of cell-substrate adhesion  (IDA)
ossification  (IBA,ISO)
osteoblast differentiation  (IEP)
positive regulation of canonical Wnt signaling pathway  (ISO)
positive regulation of cell migration  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of epithelial to mesenchymal transition  (ISO)
protein localization to nucleus  (ISO)
protein transport  (IMP)
response to cAMP  (ISO)
response to estradiol  (ISO)
response to fluoride  (ISO)
response to hydrogen peroxide  (ISO)
response to hyperoxia  (ISO)
response to insulin  (ISO)
response to mechanical stimulus  (IBA,ISO)
response to nutrient  (ISO)
response to nutrient levels  (ISO)
response to organic cyclic compound  (ISO)
response to peptide hormone  (ISO)
response to steroid hormone  (ISO)
response to xenobiotic stimulus  (ISO)
sensory perception of sound  (ISO)
skeletal system development  (IBA,IMP,ISO)
skeletal system morphogenesis  (IGI)
skin development  (IBA,IMP)
skin morphogenesis  (ISO)
tooth mineralization  (ISO)
visual perception  (ISO)

Cellular Component

References

References - curated
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47. MGDs mouse GO annotations MGD data from the GO Consortium
48. MGD IEA MGD IEA
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61. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
62. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
63. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
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66. Mouse MP Annotation Import Pipeline RGD automated import pipeline
67. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
68. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
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93. Mutation characteristics in type I collagen genes in Chinese patients with osteogenesis imperfecta. Yang Z, etal., Genet Mol Res. 2011 Feb 8;10(1):177-85. doi: 10.4238/vol10-1gmr984.
94. Wnt pathway-related gene expression in inflammatory bowel disease. You J, etal., Dig Dis Sci. 2008 Apr;53(4):1013-9. Epub 2007 Oct 16.
95. In situ hybridization analysis of rat lung alpha 1(I) and alpha 2(I) collagen gene expression in pulmonary fibrosis induced by endotracheal bleomycin injection. Zhang K, etal., Lab Invest. 1994 Feb;70(2):192-202.
96. Lefty-1 inhibits renal epithelial-mesenchymal transition by antagonizing the TGF-β/Smad signaling pathway. Zhang L, etal., J Mol Histol. 2020 Feb;51(1):77-87. doi: 10.1007/s10735-020-09859-8. Epub 2020 Feb 17.
97. Gene expression profiling in glomeruli of diabetic nephropathy rat. Zhang Q, etal., Exp Biol Med (Maywood). 2012 Aug;237(8):903-11. doi: 10.1258/ebm.2012.012032. Epub 2012 Aug 17.
98. Lipopolysaccharide induced activin A-follistatin imbalance affects cardiac fibrosis. Zhang WQ, etal., Chin Med J (Engl). 2012 Jun;125(12):2205-12.
99. Experimental murine myopia induces collagen type Ialpha1 (COL1A1) DNA methylation and altered COL1A1 messenger RNA expression in sclera. Zhou X, etal., Mol Vis. 2012;18:1312-24. Epub 2012 May 30.
100. Circular RNA expression profile and potential function of hsa_circRNA_101238 in human thoracic aortic dissection. Zou M, etal., Oncotarget. 2017 Jul 5;8(47):81825-81837. doi: 10.18632/oncotarget.18998. eCollection 2017 Oct 10.
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PMID:17548469   PMID:17554301   PMID:17595534   PMID:17654495   PMID:17662583   PMID:17705049   PMID:17764670   PMID:17881772   PMID:17950069   PMID:17980593   PMID:17986615   PMID:18025304  
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PMID:19653325   PMID:19690389   PMID:19734317   PMID:19737917   PMID:19762422   PMID:19820996   PMID:19853894   PMID:19933329   PMID:19948490   PMID:20010698   PMID:20010831   PMID:20010832  
PMID:20025746   PMID:20059955   PMID:20059976   PMID:20080568   PMID:20085738   PMID:20142103   PMID:20179096   PMID:20193675   PMID:20200944   PMID:20218816   PMID:20223936   PMID:20236931  
PMID:20237296   PMID:20368361   PMID:20430747   PMID:20440000   PMID:20458143   PMID:20463013   PMID:20498044   PMID:20499347   PMID:20512147   PMID:20515681   PMID:20541046   PMID:20548288  
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PMID:21511879   PMID:21512159   PMID:21557453   PMID:21571217   PMID:21606205   PMID:21613984   PMID:21625049   PMID:21643937   PMID:21659474   PMID:21677750   PMID:21707943   PMID:21718087  
PMID:21746880   PMID:21775118   PMID:21779369   PMID:21788370   PMID:21807129   PMID:21873635   PMID:21907137   PMID:21907695   PMID:21911092   PMID:21934140   PMID:21939397   PMID:21944754  
PMID:21949390   PMID:21962509   PMID:21979435   PMID:21987724   PMID:21989989   PMID:22020333   PMID:22022457   PMID:22093826   PMID:22096492   PMID:22113163   PMID:22152476   PMID:22155508  
PMID:22158707   PMID:22159717   PMID:22171010   PMID:22194864   PMID:22206865   PMID:22207275   PMID:22232675   PMID:22301776   PMID:22308401   PMID:22318228   PMID:22325288   PMID:22342532  
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PMID:23034633   PMID:23064687   PMID:23133399   PMID:23143395   PMID:23149718   PMID:23188710   PMID:23222438   PMID:23237810   PMID:23243279   PMID:23254193   PMID:23273220   PMID:23274346  
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PMID:23452852   PMID:23533084   PMID:23544078   PMID:23567158   PMID:23583181   PMID:23604553   PMID:23615282   PMID:23635313   PMID:23650387   PMID:23653374   PMID:23658023   PMID:23666760  
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PMID:23827711   PMID:23827712   PMID:23830207   PMID:23848320   PMID:23863479   PMID:23895934   PMID:23907538   PMID:23918805   PMID:23937658   PMID:23946498   PMID:23957394   PMID:23966707  
PMID:23991045   PMID:24006456   PMID:24012677   PMID:24019537   PMID:24022296   PMID:24029918   PMID:24046351   PMID:24046454   PMID:24114659   PMID:24192035   PMID:24209617   PMID:24209762  
PMID:24248941   PMID:24284212   PMID:24336202   PMID:24349142   PMID:24361262   PMID:24385915   PMID:24401838   PMID:24411941   PMID:24419316   PMID:24440599   PMID:24446491   PMID:24451543  
PMID:24489749   PMID:24491691   PMID:24497554   PMID:24529372   PMID:24563484   PMID:24581491   PMID:24583261   PMID:24589777   PMID:24604556   PMID:24711581   PMID:24715455   PMID:24732380  
PMID:24743337   PMID:24743474   PMID:24776885   PMID:24805232   PMID:24805236   PMID:24825348   PMID:24840544   PMID:24906150   PMID:24927920   PMID:24930703   PMID:24939936   PMID:24952082  
PMID:24952428   PMID:24952961   PMID:24979572   PMID:24988319   PMID:24996922   PMID:25035393   PMID:25043045   PMID:25043474   PMID:25068460   PMID:25086405   PMID:25087979   PMID:25090092  
PMID:25092332   PMID:25159328   PMID:25171833   PMID:25173427   PMID:25242322   PMID:25249460   PMID:25262205   PMID:25262822   PMID:25281715   PMID:25296256   PMID:25300579   PMID:25310984  
PMID:25344368   PMID:25363458   PMID:25382630   PMID:25395457   PMID:25395662   PMID:25411251   PMID:25422423   PMID:25428889   PMID:25432534   PMID:25433207   PMID:25437874   PMID:25445450  
PMID:25453901   PMID:25456127   PMID:25464126   PMID:25527076   PMID:25547114   PMID:25564625   PMID:25572963   PMID:25575822   PMID:25605327   PMID:25615642   PMID:25655194   PMID:25689619  
PMID:25690852   PMID:25691658   PMID:25695629   PMID:25715398   PMID:25734811   PMID:25736226   PMID:25746793   PMID:25774828   PMID:25775525   PMID:25808752   PMID:25812847   PMID:25843629  
PMID:25848867   PMID:25865501   PMID:25866973   PMID:25886697   PMID:25919951   PMID:25921090   PMID:25956904   PMID:25965570   PMID:25977369   PMID:25978185   PMID:25985393   PMID:25987251  
PMID:25987256   PMID:25988972   PMID:26020233   PMID:26051322   PMID:26058078   PMID:26062940   PMID:26091037   PMID:26091038   PMID:26094741   PMID:26096209   PMID:26100884   PMID:26134413  
PMID:26139524   PMID:26140606   PMID:26192994   PMID:26222436   PMID:26244796   PMID:26258302   PMID:26264579   PMID:26277094   PMID:26283861   PMID:26301497   PMID:26362410   PMID:26362633  
PMID:26376991   PMID:26378152   PMID:26383724   PMID:26390284   PMID:26395480   PMID:26411367   PMID:26438359   PMID:26439301   PMID:26445246   PMID:26446156   PMID:26447190   PMID:26494538  
PMID:26498761   PMID:26511924   PMID:26551465   PMID:26553654   PMID:26642357   PMID:26673327   PMID:26681395   PMID:26701347   PMID:26729896   PMID:26731471   PMID:26739452   PMID:26769006  
PMID:26794256   PMID:26801741   PMID:26808549   PMID:26821812   PMID:26890219   PMID:26898884   PMID:26899202   PMID:26909318   PMID:26910059   PMID:26924503   PMID:26925839   PMID:26935598  
PMID:26951553   PMID:26971819   PMID:26974661   PMID:26997272   PMID:27018594   PMID:27048913   PMID:27052174   PMID:27117405   PMID:27118846   PMID:27121020   PMID:27162138   PMID:27180663  
PMID:27249171   PMID:27249321   PMID:27251290   PMID:27256716   PMID:27256803   PMID:27292029   PMID:27297606   PMID:27300434   PMID:27340177   PMID:27357698   PMID:27373156   PMID:27398409  
PMID:27401346   PMID:27405641   PMID:27405980   PMID:27411590   PMID:27418101   PMID:27421068   PMID:27436577   PMID:27467521   PMID:27471255   PMID:27471260   PMID:27477081   PMID:27505673  
PMID:27505889   PMID:27508874   PMID:27527664   PMID:27533015   PMID:27580035   PMID:27590115   PMID:27593178   PMID:27621060   PMID:27621061   PMID:27622329   PMID:27641475   PMID:27664939  
PMID:27665369   PMID:27728800   PMID:27728803   PMID:27729406   PMID:27746183   PMID:27770432   PMID:27782124   PMID:27790870   PMID:27804995   PMID:27870967   PMID:27930311   PMID:27939132  
PMID:27984723   PMID:28049690   PMID:28049691   PMID:28052023   PMID:28052872   PMID:28057861   PMID:28065642   PMID:28071719   PMID:28090691   PMID:28101532   PMID:28103936   PMID:28130213  
PMID:28132847   PMID:28143780   PMID:28143955   PMID:28170160   PMID:28218908   PMID:28237967   PMID:28245286   PMID:28327634   PMID:28348418   PMID:28356389   PMID:28361052   PMID:28400537  
PMID:28423321   PMID:28429718   PMID:28438836   PMID:28446688   PMID:28457749   PMID:28467108   PMID:28486106   PMID:28503576   PMID:28513598   PMID:28520221   PMID:28525743   PMID:28527294  
PMID:28535371   PMID:28544355   PMID:28556366   PMID:28574598   PMID:28615249   PMID:28628111   PMID:28684528   PMID:28684544   PMID:28698371   PMID:28733998   PMID:28737488   PMID:28771943  
PMID:28790014   PMID:28809397   PMID:28818870   PMID:28823558   PMID:28847650   PMID:28863946   PMID:28880886   PMID:28916811   PMID:28923960   PMID:28937836   PMID:28972074   PMID:28983104  
PMID:29044097   PMID:29054992   PMID:29084269   PMID:29122677   PMID:29141911   PMID:29146735   PMID:29174564   PMID:29176738   PMID:29191093   PMID:29196262   PMID:29196603   PMID:29249356  
PMID:29249464   PMID:29290586   PMID:29317452   PMID:29323290   PMID:29352266   PMID:29368411   PMID:29437042   PMID:29453333   PMID:29456135   PMID:29514090   PMID:29523871   PMID:29529016  
PMID:29530978   PMID:29538357   PMID:29551267   PMID:29570999   PMID:29592892   PMID:29593327   PMID:29618652   PMID:29636669   PMID:29652518   PMID:29665134   PMID:29677202   PMID:29741478  
PMID:29743679   PMID:29760047   PMID:29761584   PMID:29802314   PMID:29956664   PMID:29964027   PMID:29969188   PMID:29999454   PMID:30008323   PMID:30017590   PMID:30037824   PMID:30061411  
PMID:30111653   PMID:30122475   PMID:30122556   PMID:30143533   PMID:30178747   PMID:30181393   PMID:30184489   PMID:30201295   PMID:30201326   PMID:30217615   PMID:30220521   PMID:30245134  
PMID:30269950   PMID:30295421   PMID:30305289   PMID:30341149   PMID:30380424   PMID:30389913   PMID:30446657   PMID:30459452   PMID:30478225   PMID:30487608   PMID:30504126   PMID:30561324  
PMID:30566624   PMID:30591434   PMID:30595533   PMID:30604848   PMID:30605676   PMID:30620902   PMID:30635573   PMID:30661985   PMID:30670377   PMID:30674894   PMID:30685387   PMID:30705065  
PMID:30735122   PMID:30738849   PMID:30746504   PMID:30778220   PMID:30801848   PMID:30804042   PMID:30840887   PMID:30860479   PMID:30878468   PMID:30883226   PMID:30898653   PMID:30905671  
PMID:30912742   PMID:30936457   PMID:30947518   PMID:30949132   PMID:31006621   PMID:31040226   PMID:31080134   PMID:31100714   PMID:31138536   PMID:31171783   PMID:31180501   PMID:31199918  
PMID:31202927   PMID:31218575   PMID:31221665   PMID:31301196   PMID:31301300   PMID:31319059   PMID:31331318   PMID:31350178   PMID:31367040   PMID:31373834   PMID:31387873   PMID:31405949  
PMID:31416916   PMID:31481792   PMID:31488578   PMID:31488818   PMID:31562190   PMID:31581792   PMID:31618630   PMID:31624071   PMID:31634485   PMID:31659274   PMID:31685653   PMID:31719045  
PMID:31771969   PMID:31794263   PMID:31835801   PMID:31844321   PMID:31859031   PMID:31874220   PMID:31894105   PMID:31949142   PMID:31959934   PMID:31961320   PMID:31961823   PMID:31980609  
PMID:32002646   PMID:32014112   PMID:32024800   PMID:32040930   PMID:32041253   PMID:32046118   PMID:32049001   PMID:32058953   PMID:32059807   PMID:32075734   PMID:32112888   PMID:32123336  
PMID:32142681   PMID:32151560   PMID:32212902   PMID:32219165   PMID:32244499   PMID:32246510   PMID:32290615   PMID:32309614   PMID:32325033   PMID:32338642   PMID:32341094   PMID:32350083  
PMID:32374849   PMID:32413320   PMID:32468660   PMID:32470392   PMID:32472011   PMID:32523052   PMID:32620751   PMID:32639068   PMID:32730753   PMID:32736681   PMID:32759216   PMID:32816902  
PMID:32819558   PMID:32820040   PMID:32826333   PMID:32857951   PMID:32882513   PMID:32909608   PMID:32958778   PMID:32968110   PMID:33029009   PMID:33075202   PMID:33087321   PMID:33097532  
PMID:33125897   PMID:33135480   PMID:33147210   PMID:33150381   PMID:33219434   PMID:33253203   PMID:33268865   PMID:33308444   PMID:33441311   PMID:33465052   PMID:33472844   PMID:33500353  
PMID:33524637   PMID:33526661   PMID:33536620   PMID:33560227   PMID:33580754   PMID:33596429   PMID:33621853   PMID:33635162   PMID:33663221   PMID:33667385   PMID:33707780   PMID:33712657  
PMID:33749947   PMID:33754063   PMID:33771896   PMID:33783474   PMID:33811421   PMID:33875569   PMID:33932339   PMID:33950576   PMID:33951475   PMID:33972733   PMID:34003106   PMID:34119473  
PMID:34128978   PMID:34155309   PMID:34162999   PMID:34172578   PMID:34189436   PMID:34205850   PMID:34242094   PMID:34242617   PMID:34248495   PMID:34260913   PMID:34289374   PMID:34309509  
PMID:34321999   PMID:34323105   PMID:34331943   PMID:34368841   PMID:34463618   PMID:34463714   PMID:34469727   PMID:34525348   PMID:34557486   PMID:34569061   PMID:34590686   PMID:34618403  
PMID:34667264   PMID:34696786   PMID:34699385   PMID:34709885   PMID:34830270   PMID:34893625   PMID:34929174   PMID:35021856   PMID:35037469   PMID:35119382   PMID:35140200   PMID:35145326  
PMID:35148175   PMID:35167946   PMID:35200715   PMID:35285801   PMID:35293576   PMID:35385744   PMID:35442741   PMID:35472633   PMID:35476977   PMID:35568059   PMID:35600581   PMID:35624211  
PMID:35635445   PMID:35741102   PMID:35768505   PMID:35831318   PMID:35857513   PMID:35868307   PMID:35894043   PMID:35922466   PMID:35947192   PMID:35988140   PMID:36000457   PMID:36008138  
PMID:36124393   PMID:36136514   PMID:36136742   PMID:36147959   PMID:36202972   PMID:36207400   PMID:36213234   PMID:36227576   PMID:36307419   PMID:36350252   PMID:36414671   PMID:36414704  
PMID:36420731   PMID:36441651   PMID:36445780   PMID:36449606   PMID:36456880   PMID:36460641   PMID:36473461   PMID:36509362   PMID:36522157   PMID:36539111   PMID:36584300   PMID:36656123  
PMID:36685938   PMID:36706168   PMID:36708947   PMID:36726200   PMID:36754021   PMID:36787502   PMID:36867129   PMID:36910145   PMID:36920550   PMID:36967771   PMID:36973504   PMID:37040760  
PMID:37067297   PMID:37138883   PMID:37160119   PMID:37261735   PMID:37524711   PMID:37566656   PMID:37591942   PMID:37629051   PMID:37640003   PMID:37683603   PMID:37702066   PMID:37709732  
PMID:37852258   PMID:37931288   PMID:37935281   PMID:37977043   PMID:37978903   PMID:37982452   PMID:38011284   PMID:38063851   PMID:38103809   PMID:38113115   PMID:38171334   PMID:38303699  
PMID:38318368   PMID:38321106   PMID:38396719   PMID:38422172  


Genomics

Comparative Map Data
Col1a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,827,050 - 94,843,868 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,827,050 - 94,843,868 (+)EnsemblGRCm39 Ensembl
GRCm381194,936,224 - 94,953,042 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,936,224 - 94,953,042 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,797,584 - 94,813,181 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,752,360 - 94,767,957 (+)NCBIMGSCv36mm8
Celera11104,549,617 - 104,565,301 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
COL1A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,184,101 - 50,201,631 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,184,101 - 50,201,632 (-)EnsemblGRCh38hg38GRCh38
GRCh371748,261,462 - 48,278,992 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,616,456 - 45,633,999 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,616,455 - 45,633,992NCBI
Celera1744,722,303 - 44,739,829 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,630,129 - 43,647,463 (-)NCBIHuRef
CHM1_11748,325,754 - 48,343,284 (-)NCBICHM1_1
T2T-CHM13v2.01751,051,162 - 51,068,680 (-)NCBIT2T-CHM13v2.0
Col1a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,380,458 - 80,397,461 (+)NCBIGRCr8
mRatBN7.21079,883,622 - 79,900,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,883,622 - 79,900,624 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1084,832,832 - 84,849,838 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01084,330,903 - 84,347,909 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01079,723,993 - 79,740,998 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,745,801 - 82,762,790 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,745,801 - 82,762,789 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01082,563,434 - 82,580,364 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,622,438 - 83,639,368 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,636,918 - 83,653,733 (+)NCBI
Celera1078,658,450 - 78,675,438 (+)NCBICelera
Cytogenetic Map10q26NCBI
Col1a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,468,290 - 11,483,073 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,468,156 - 11,484,410 (+)NCBIChiLan1.0ChiLan1.0
COL1A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,373,893 - 66,390,381 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,180,391 - 71,196,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,274,349 - 44,291,764 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,149,277 - 49,166,833 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,150,677 - 49,166,677 (-)Ensemblpanpan1.1panPan2
COL1A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,183,852 - 26,199,927 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,183,852 - 26,199,927 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,576,913 - 25,592,983 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,978,359 - 26,994,434 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl926,978,317 - 26,994,453 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1925,746,094 - 25,762,176 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,004,757 - 26,020,835 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,134,702 - 26,150,789 (-)NCBIUU_Cfam_GSD_1.0
Col1a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,609,297 - 25,626,616 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,448,654 - 11,464,444 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,448,552 - 11,465,836 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL1A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,379,090 - 26,397,004 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,379,087 - 26,397,180 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COL1A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11643,134,648 - 43,152,313 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1643,134,779 - 43,150,930 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,850,099 - 13,867,746 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col1a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,168,797 - 6,183,071 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,167,504 - 6,183,208 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Col1a1
749 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1138
Count of miRNA genes:561
Interacting mature miRNAs:683
Transcripts:ENSMUST00000001547, ENSMUST00000139974, ENSMUST00000148046, ENSMUST00000148593
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
13524529Bodwtq10_mbody wweight QTL 10 (mouse)119067951297699512Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1300847Par1_mpulmonary adenoma resistance 1 (mouse)Not determined119406377996167421Mouse

Markers in Region
PMC114431P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,936,373 - 94,936,508UniSTSGRCm38
MGSCv371194,797,687 - 94,797,822UniSTSGRCm37
Celera11104,549,720 - 104,549,855UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
PMC150841P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,938,082 - 94,938,538UniSTSGRCm38
MGSCv371194,799,396 - 94,799,852UniSTSGRCm37
Celera11104,551,429 - 104,551,885UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
PMC151926P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,951,483 - 94,951,818UniSTSGRCm38
MGSCv371194,812,797 - 94,813,132UniSTSGRCm37
Celera11104,564,917 - 104,565,252UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
PMC316641P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,946,308 - 94,947,113UniSTSGRCm38
MGSCv371194,807,622 - 94,808,427UniSTSGRCm37
Celera11104,559,742 - 104,560,547UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
Col1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371194,799,361 - 94,799,574UniSTSGRCm37
MGSCv371194,813,939 - 94,814,045UniSTSGRCm37
MGSCv371194,808,969 - 94,809,237UniSTSGRCm37
Celera11104,566,056 - 104,566,159UniSTS
Celera11104,561,089 - 104,561,357UniSTS
Celera11104,551,394 - 104,551,607UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
cM Map1156.0UniSTS
cM Map1156.0UniSTS
PMC34669P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,950,546 - 94,951,199UniSTSGRCm38
MGSCv371194,811,860 - 94,812,513UniSTSGRCm37
Celera11104,563,980 - 104,564,633UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
COL1A1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,947,655 - 94,947,923UniSTSGRCm38
MGSCv371194,808,969 - 94,809,237UniSTSGRCm37
Celera11104,561,089 - 104,561,357UniSTS
Cytogenetic Map11DUniSTS
Col1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,952,625 - 94,952,731UniSTSGRCm38
MGSCv371194,813,939 - 94,814,045UniSTSGRCm37
Celera11104,566,056 - 104,566,159UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
Col1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
Col1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,938,047 - 94,938,260UniSTSGRCm38
MGSCv371194,799,361 - 94,799,574UniSTSGRCm37
Celera11104,551,394 - 104,551,607UniSTS
Cytogenetic Map11DUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH001861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ032538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY133378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K01688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M14423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M17491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M24372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S67530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U03419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U08020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U38544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X06753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X54876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X57981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000001547   ⟹   ENSMUSP00000001547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,827,050 - 94,843,868 (+)Ensembl
GRCm38.p6 Ensembl1194,936,224 - 94,953,042 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,828,512 - 94,828,929 (+)Ensembl
GRCm38.p6 Ensembl1194,937,686 - 94,938,103 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,836,194 - 94,836,855 (+)Ensembl
GRCm38.p6 Ensembl1194,945,368 - 94,946,029 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,829,838 - 94,830,567 (+)Ensembl
GRCm38.p6 Ensembl1194,939,012 - 94,939,741 (+)Ensembl
RefSeq Acc Id: NM_007742   ⟹   NP_031768
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,827,050 - 94,843,868 (+)NCBI
GRCm381194,936,224 - 94,953,042 (+)NCBI
MGSCv371194,797,584 - 94,813,181 (+)RGD
Celera11104,549,617 - 104,565,301 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031768   ⟸   NM_007742
- Peptide Label: preproprotein
- UniProtKB: Q6PCL3 (UniProtKB/Swiss-Prot),   Q63919 (UniProtKB/Swiss-Prot),   Q61427 (UniProtKB/Swiss-Prot),   Q61367 (UniProtKB/Swiss-Prot),   Q60635 (UniProtKB/Swiss-Prot),   Q53WT0 (UniProtKB/Swiss-Prot),   Q810J9 (UniProtKB/Swiss-Prot),   P11087 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000001547   ⟸   ENSMUST00000001547
Protein Domains
Fibrillar collagen NC1   VWFC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P11087-F1-model_v2 AlphaFold P11087 1-1453 view protein structure

Promoters
RGD ID:6820648
Promoter ID:MM_KWN:9302
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000004184,   OTTMUST00000072724
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,797,116 - 94,797,762 (+)MPROMDB
RGD ID:6849502
Promoter ID:EP07067
Type:single initiation site
Name:MM_CA11
Description:alpha 1 type I collagen, COL1A1 or COLA1 gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 134; Mammalian alpha 1 type I collagen
Tissues & Cell Lines:fetus
Experiment Methods:Nuclease protection with homologous sequence ladder
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371194,797,566 - 94,797,626EPD
MGSCv361194,797,566 - 94,797,626EPD
RGD ID:6820649
Promoter ID:MM_KWN:9303
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000004185
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,798,101 - 94,799,307 (+)MPROMDB
RGD ID:6820647
Promoter ID:MM_KWN:9304
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000072725
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,799,556 - 94,800,767 (+)MPROMDB
RGD ID:6820650
Promoter ID:MM_KWN:9305
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000004186
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,805,916 - 94,806,857 (+)MPROMDB
RGD ID:8676236
Promoter ID:EPDNEW_M16149
Type:multiple initiation site
Name:Col1a1_1
Description:Mus musculus collagen, type I, alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381194,936,253 - 94,936,313EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88467 AgrOrtholog
Ensembl Genes ENSMUSG00000001506 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000001547 ENTREZGENE
  ENSMUST00000001547.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6-Phosphogluconate Dehydrogenase, domain 3 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/Swiss-Prot
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fib_collagen_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_dom UniProtKB/Swiss-Prot
KEGG Report mmu:12842 UniProtKB/Swiss-Prot
MGD MGI:88467 ENTREZGENE
NCBI Gene 12842 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(I) CHAIN UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(II) CHAIN UniProtKB/Swiss-Prot
  OTOLIN-1 UniProtKB/TrEMBL
Pfam COLFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot
PharmGKB COL1A1 RGD
PhenoGen Col1a1 PhenoGen
PROSITE NC1_FIB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFC_1 UniProtKB/Swiss-Prot
  VWFC_2 UniProtKB/Swiss-Prot
SMART COLFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWC UniProtKB/Swiss-Prot
Superfamily-SCOP FnI-like domain UniProtKB/Swiss-Prot
UniProt CO1A1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q53WT0 ENTREZGENE
  Q60635 ENTREZGENE
  Q60785_MOUSE UniProtKB/TrEMBL
  Q61367 ENTREZGENE
  Q61427 ENTREZGENE
  Q63919 ENTREZGENE
  Q6PCL3 ENTREZGENE
  Q810J9 ENTREZGENE
  Q99LL6_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q53WT0 UniProtKB/Swiss-Prot
  Q60635 UniProtKB/Swiss-Prot
  Q61367 UniProtKB/Swiss-Prot
  Q61427 UniProtKB/Swiss-Prot
  Q63919 UniProtKB/Swiss-Prot
  Q6PCL3 UniProtKB/Swiss-Prot
  Q810J9 UniProtKB/Swiss-Prot