Col1a1 (collagen, type I, alpha 1) - Rat Genome Database

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Gene: Col1a1 (collagen, type I, alpha 1) Mus musculus
Analyze
Symbol: Col1a1
Name: collagen, type I, alpha 1
RGD ID: 62109
MGI Page MGI
Description: Enables identical protein binding activity. An extracellular matrix structural constituent. Involved in cellular response to mechanical stimulus and osteoblast differentiation. Acts upstream of or within several processes, including face morphogenesis; intramembranous ossification; and skeletal system morphogenesis. Located in collagen-containing extracellular matrix; cytoplasm; and extracellular space. Part of collagen type I trimer. Is expressed in several structures, including alimentary system; embryo mesenchyme; heart and pericardium; limb; and skeleton. Used to study several diseases, including D-2-hydroxyglutaric aciduria; Diamond-Blackfan anemia; hepatocellular carcinoma; lung cancer (multiple); and osteogenesis imperfecta (multiple). Human ortholog(s) of this gene implicated in several diseases, including Ehlers-Danlos syndrome arthrochalasia type 1; aggressive periodontitis; bone disease (multiple); cutaneous leishmaniasis; and dentinogenesis imperfecta. Orthologous to human COL1A1 (collagen type I alpha 1 chain).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: alpha-1 type 1 collagen; alpha-1 type I collagen; Co; Col; Col1; Col1a-1; Cola-1; Cola1; collagen alpha-1(I) chain; Mov-; Mov-13; Mov13; procollagen, type I, alpha 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,827,050 - 94,843,868 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,827,050 - 94,843,868 (+)EnsemblGRCm39 Ensembl
GRCm381194,936,224 - 94,953,042 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,936,224 - 94,953,042 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,797,584 - 94,813,181 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,752,360 - 94,767,957 (+)NCBIMGSCv36mm8
Celera11104,549,617 - 104,565,301 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Col1a1Mouseaggressive periodontitis  ISOCOL1A1 (Homo sapiens)5688299DNA:SNPRGD 
Col1a1Mousealcoholic hepatitis  ISOCOL1A1 (Homo sapiens)5688335 RGD 
Col1a1MouseArteriovenous Fistula  ISOCol1a1 (Rattus norvegicus)8552771in Long Evans rats and mRNA:increased expression:aortaRGD 
Col1a1Mousebeta thalassemia  ISOCOL1A1 (Homo sapiens)11041179DNA:SNPRGD 
Col1a1MouseBisphosphonate-Associated Osteonecrosis of the Jaw treatmentISOCOL1A1 (Homo sapiens)11041182associated with Multiple MyelomaRGD 
Col1a1Mousebladder neck obstruction treatmentISOCol1a1 (Rattus norvegicus)7257549 RGD 
Col1a1MouseBone Fractures  ISOCOL1A1 (Homo sapiens)734801 RGD 
Col1a1MouseCaffey disease  ISOCOL1A1 (Homo sapiens)5688296DNA:mutation:exon:3040C>T (human)RGD 
Col1a1MouseCaffey disease  ISOCOL1A1 (Homo sapiens)11667069DNA:missense mutation:exon:c.3040C>T(p.R836C)(human)RGD 
Col1a1MouseCardiac Fibrosis  ISOCol1a1 (Rattus norvegicus)5688337associated with Hypertension and mRNA:increased expression:heartRGD 
Col1a1MouseCardiac Fibrosis  ISOCol1a1 (Rattus norvegicus)156430318protein:increased expression:blood serum (rat)RGD 
Col1a1MouseCardiac Fibrosis treatmentISOCol1a1 (Rattus norvegicus)8552780 RGD 
Col1a1Mousecholestasis  ISOCol1a1 (Rattus norvegicus)8552776mRNA:increased expression:liver (rat)RGD 
Col1a1Mousecholestasis  IEP 8552675mRNA:increased expression:liver (mouse)RGD 
Col1a1Mousecholestasis treatmentISOCol1a1 (Rattus norvegicus)8552699 RGD 
Col1a1Mousechronic obstructive pulmonary disease  ISOCOL1A1 (Homo sapiens)5131854 RGD 
Col1a1MouseChronic Pancreatitis treatmentISOCol1a1 (Rattus norvegicus)8552779 RGD 
Col1a1MouseContracture treatmentISOCol1a1 (Rattus norvegicus)11041578 RGD 
Col1a1Mousecutaneous leishmaniasis  ISOCOL1A1 (Homo sapiens)11041176DNA:SNPs: :rs1061237 and rs2586488 (human)RGD 
Col1a1Mousedegenerative disc disease  ISOCOL1A1 (Homo sapiens)5688293DNA:SNP: :rs2075555 (human)RGD 
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Original Reference(s)
Col1a1Mouseasphyxia neonatorum  ISOCOL1A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Asphyxia neonatorumClinVarPMID:25741868 and PMID:8364588
Col1a1Mouseautosomal recessive limb-girdle muscular dystrophy type 2D  ISOCOL1A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive limb-girdle muscular dystrophy type 2DClinVarPMID:25106685 and PMID:28492532
Col1a1MouseBone Fractures  ISOCOL1A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Recurrent fracturesClinVarPMID:17078022 more ...
Col1a1MouseCaffey disease  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10739762 more ...
Col1a1MouseCombined Osteogenesis Imperfecta and Ehlers-Danlos Syndrome 1  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10739762 more ...
Col1a1Mousecongenital heart disease  ISOCOL1A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital heart diseaseClinVarPMID:28492532
Col1a1Mouseconnective tissue disease  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:15741671 more ...
Col1a1Mousedentinogenesis imperfecta  ISOCOL1A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Dentinogenesis imperfectaClinVarPMID:17078022 more ...
Col1a1Mousedilated cardiomyopathy  ISOCOL1A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary dilated cardiomyopathyClinVarPMID:25741868
Col1a1MouseEhlers-Danlos syndrome  ISOCOL1A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndromeClinVarPMID:10739762 more ...
Col1a1MouseEhlers-Danlos syndrome arthrochalasia type 1  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10739762 more ...
Col1a1MouseEhlers-Danlos syndrome arthrochalasia type 2  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:18311573 more ...
Col1a1MouseEhlers-Danlos syndrome cardiac valvular type  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10739762 more ...
Col1a1MouseEhlers-Danlos syndrome cardiac valvular type  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10739762 more ...
Col1a1MouseEhlers-Danlos syndrome cardiac valvular type  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10931857 more ...
Col1a1MouseEhlers-Danlos syndrome cardiac valvular type  ISOCOL1A1 (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome and arthrochalasis typeClinVarPMID:10739762 more ...
Col1a1MouseEhlers-Danlos syndrome cardiac valvular type  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10931857 more ...
Col1a1MouseEhlers-Danlos syndrome classic type 1  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10739762 more ...
Col1a1MouseEhlers-Danlos syndrome classic type 1  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10739762 more ...
Col1a1MouseEhlers-Danlos syndrome classic type 1  ISOCOL1A1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10739762 more ...
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Col1a1Mouseaortic valve insufficiency  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21216836
Col1a1Mouseautoimmune disease  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25055964
Col1a1MouseCaffey disease  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Col1a1Mousecalcinosis  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21335463
Col1a1Mousecholangitis  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25055964
Col1a1MouseDissecting Aneurysm  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:8757037
Col1a1MouseEhlers-Danlos syndrome arthrochalasia type 1  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Col1a1MouseExperimental Liver Cirrhosis  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136 more ...
Col1a1Mouseextrahepatic cholestasis  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28789951 and PMID:31932644
Col1a1MouseFibrosis  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20388698
Col1a1Mouseheart valve disease  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21335463
Col1a1Mousehypertension  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11682445
Col1a1MouseKeloid  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20128793
Col1a1MouseLeft Ventricular Hypertrophy  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:11181017
Col1a1Mouseliver cirrhosis  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21863215 more ...
Col1a1MouseNephrogenic Fibrosing Dermopathy  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20570839
Col1a1Mousenephrosclerosis  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30818366
Col1a1Mousenephrotic syndrome  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:1281619
Col1a1Mouseoral submucous fibrosis  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16311067
Col1a1Mouseosteogenesis imperfecta  ISOCOL1A1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:8757037
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Original Reference(s)
Col1a1MouseEhlers-Danlos syndrome  IAGP 13592920OMIM:225400MouseDO 
Col1a1Mouseosteogenesis imperfecta  IAGP 13592920 MouseDO 
Col1a1Mouseosteogenesis imperfecta type 1  IAGP 13592920OMIM:166200MouseDO 
Col1a1Mouseosteogenesis imperfecta type 2  IAGP 13592920OMIM:166210MouseDO 
Col1a1Mouseosteogenesis imperfecta type 3  IAGP 13592920OMIM:259420MouseDO 
Col1a1Mouseosteogenesis imperfecta type 4  IAGP 13592920OMIM:166220MouseDO 

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Original Reference(s)
Col1a1Mouse(+)-beta-thujone multiple interactionsISOCOL1A1 (Homo sapiens)6480464[beta-thujone co-treated with linalyl acetate co-treated with sabinene co-treated with linalool co-treated with Camphor co-treated with myrcene co-treated with Eucalyptol co-treated with caryophyllene co-treated with spathulenol] results in decreased expression of COL1A1 mRNACTDPMID:38000518
Col1a1Mouse(+)-schisandrin B multiple interactionsISOCOL1A1 (Homo sapiens)6480464MIR30E mRNA affects the reaction [schizandrin B inhibits the reaction [TGFB1 protein results in increased expression of COL1A1 mRNA]] more ...CTDPMID:31697999
Col1a1Mouse(+)-schisandrin B multiple interactionsISOCol1a1 (Rattus norvegicus)6480464schizandrin B inhibits the reaction [TGFB1 protein results in increased expression of COL1A1 mRNA]CTDPMID:31697999
Col1a1Mouse(+)-schisandrin B decreases expressionISOCOL1A1 (Homo sapiens)6480464schizandrin B results in decreased expression of COL1A1 mRNACTDPMID:31697999
Col1a1Mouse(+)-Tetrandrine decreases expressionISOCOL1A1 (Homo sapiens)6480464tetrandrine results in decreased expression of COL1A1 mRNACTDPMID:27235791
Col1a1Mouse(-)-anisomycin multiple interactionsISOCOL1A1 (Homo sapiens)6480464Anisomycin inhibits the reaction [1-hydroxyalantolactone inhibits the reaction [TGFB1 protein results in increased expression of COL1A1 protein]]CTDPMID:34758440
Col1a1Mouse(-)-epigallocatechin 3-gallate multiple interactionsEXP 6480464epigallocatechin gallate inhibits the reaction [Carbon Tetrachloride results in increased expression of COL1A1 mRNA]CTDPMID:20438794
Col1a1Mouse(-)-epigallocatechin 3-gallate increases expressionISOCOL1A1 (Homo sapiens)6480464epigallocatechin gallate results in increased expression of COL1A1 mRNACTDPMID:20706672
Col1a1Mouse(-)-selegiline multiple interactionsEXP 6480464[Clorgyline co-treated with Selegiline] inhibits the reaction [Norepinephrine results in increased expression of COL1A1 mRNA]CTDPMID:34609854
Col1a1Mouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of COL1A1 mRNACTDPMID:36331819
Col1a1Mouse(2R,4R)-1-[(2S)-5-(diaminomethylideneamino)-2-[(3-methyl-1,2,3,4-tetrahydroquinolin-8-yl)sulfonylamino]-1-oxopentyl]-4-methyl-2-piperidinecarboxylic acid multiple interactionsEXP 6480464argatroban inhibits the reaction [Dietary Fats results in increased expression of COL1A1 mRNA]CTDPMID:22841818
Col1a1Mouse(R)-camphor multiple interactionsISOCOL1A1 (Homo sapiens)6480464[beta-thujone co-treated with linalyl acetate co-treated with sabinene co-treated with linalool co-treated with Camphor co-treated with myrcene co-treated with Eucalyptol co-treated with caryophyllene co-treated with spathulenol] results in decreased expression of COL1A1 mRNACTDPMID:38000518
Col1a1Mouse(R)-carnitine multiple interactionsISOCol1a1 (Rattus norvegicus)6480464Carnitine inhibits the reaction [perfluorooctane sulfonic acid results in increased expression of COL1A1 mRNA] and Carnitine inhibits the reaction [sunitinib results in increased expression of COL1A1 mRNA]CTDPMID:26581635 and PMID:28973641
Col1a1Mouse(R)-linalyl acetate multiple interactionsISOCOL1A1 (Homo sapiens)6480464[beta-thujone co-treated with linalyl acetate co-treated with sabinene co-treated with linalool co-treated with Camphor co-treated with myrcene co-treated with Eucalyptol co-treated with caryophyllene co-treated with spathulenol] results in decreased expression of COL1A1 mRNACTDPMID:38000518
Col1a1Mouse(R)-lipoic acid multiple interactionsISOCol1a1 (Rattus norvegicus)6480464[Diethylnitrosamine co-treated with Thioacetamide co-treated with Thioctic Acid] affects the expression of COL1A1 mRNA and Thioctic Acid inhibits the reaction [Thioacetamide results in increased expression of COL1A1 mRNA]CTDPMID:21251946 and PMID:23830814
Col1a1Mouse(R)-lipoic acid multiple interactionsEXP 6480464Thioctic Acid inhibits the reaction [Bleomycin results in increased expression of COL1A1 mRNA] and Thioctic Acid inhibits the reaction [Silicon results in increased expression of COL1A1 mRNA]CTDPMID:34252510 and PMID:35187969
Col1a1Mouse(R)-noradrenaline multiple interactionsISOCol1a1 (Rattus norvegicus)6480464carvedilol inhibits the reaction [Norepinephrine results in increased expression of COL1A1 mRNA] and Doxazosin inhibits the reaction [Norepinephrine results in increased expression of COL1A1 mRNA]CTDPMID:10722803 and PMID:19575289
Col1a1Mouse(R)-noradrenaline increases expressionEXP 6480464Norepinephrine results in increased expression of COL1A1 mRNACTDPMID:34609854
Col1a1Mouse(R)-noradrenaline multiple interactionsEXP 6480464[Clorgyline co-treated with Selegiline] inhibits the reaction [Norepinephrine results in increased expression of COL1A1 mRNA] and FPS-ZM1 inhibits the reaction [Norepinephrine results in increased expression of COL1A1 mRNA]CTDPMID:34609854
Col1a1Mouse(R)-noradrenaline increases expressionISOCol1a1 (Rattus norvegicus)6480464Norepinephrine results in increased expression of COL1A1 mRNACTDPMID:10722803 more ...

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Biological Process
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Original Reference(s)
Col1a1Mouseblood vessel development involved_inIBAPANTHER:PTN000614497 and MGI:884672290270 GO_CentralGO_REF:0000033
Col1a1Mouseblood vessel development acts_upstream_of_or_withinIMPMGI:21794052290270 PMID:14630726MGIPMID:14630726
Col1a1Mouseblood vessel development involved_inISOUniProtKB:P024522290270 GO_CentralGO_REF:0000119
Col1a1Mousebone trabecula formation acts_upstream_of_or_withinIGIMGI:970092290270 PMID:17440987MGIPMID:17440987
Col1a1Mousecartilage development involved in endochondral bone morphogenesis acts_upstream_of_or_withinIMPMGI:37695852290270 PMID:18248096MGIPMID:18248096
Col1a1Mousecellular response to amino acid stimulus acts_upstream_of_or_withinIDA 2290270 PMID:20548288MGIPMID:20548288
Col1a1Mousecellular response to epidermal growth factor stimulus  ISOCol1a1 (Rattus norvegicus)9068941 RGDPMID:2016852 and REF_RGD_ID:2316227
Col1a1Mousecellular response to epidermal growth factor stimulus involved_inIEAUniProtKB:P02454 and ensembl:ENSRNOP000000053112290270 EnsemblGO_REF:0000107
Col1a1Mousecellular response to fibroblast growth factor stimulus involved_inIEAUniProtKB:P02454 and ensembl:ENSRNOP000000053112290270 EnsemblGO_REF:0000107
Col1a1Mousecellular response to fibroblast growth factor stimulus  ISOCol1a1 (Rattus norvegicus)9068941 RGDPMID:16972247 and REF_RGD_ID:8552747
Col1a1Mousecellular response to fluoride  ISOCol1a1 (Rattus norvegicus)9068941 RGDPMID:21093551 and REF_RGD_ID:8552690
Col1a1Mousecellular response to fluoride involved_inIEAUniProtKB:P02454 and ensembl:ENSRNOP000000053112290270 EnsemblGO_REF:0000107
Col1a1Mousecellular response to glucose stimulus  ISOCol1a1 (Rattus norvegicus)9068941 RGDPMID:32065356 and REF_RGD_ID:401824679
Col1a1Mousecellular response to glucose stimulus involved_inIEAUniProtKB:P02454 and ensembl:ENSRNOP000000053112290270 EnsemblGO_REF:0000107
Col1a1Mousecellular response to mechanical stimulus involved_inIEP 2290270 PMID:21625049UniProtPMID:21625049
Col1a1Mousecellular response to mechanical stimulus  ISOCol1a1 (Rattus norvegicus)9068941uniaxial mechanical tensionRGDPMID:22615126 and REF_RGD_ID:8552682
Col1a1Mousecellular response to retinoic acid  ISOCol1a1 (Rattus norvegicus)9068941 RGDPMID:1921334 more ...
Col1a1Mousecellular response to retinoic acid involved_inIEAUniProtKB:P02454 and ensembl:ENSRNOP000000053112290270 EnsemblGO_REF:0000107
Col1a1Mousecellular response to transforming growth factor beta stimulus involved_inIEAUniProtKB:P02454 and ensembl:ENSRNOP000000053112290270 EnsemblGO_REF:0000107
Col1a1Mousecellular response to transforming growth factor beta stimulus  ISOCol1a1 (Rattus norvegicus)9068941 RGDPMID:23560091 and REF_RGD_ID:8552683
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Cellular Component
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Col1a1Mousecollagen trimer part_ofIDA 2290270 PMID:10608859 more ...MGIPMID:10608859 more ...
Col1a1Mousecollagen trimer part_ofIMPMGI:21794052290270 PMID:14630726MGIPMID:14630726
Col1a1Mousecollagen type I trimer part_ofIBAPANTHER:PTN000614497 and MGI:884672290270 GO_CentralGO_REF:0000033
Col1a1Mousecollagen type I trimer part_ofISOUniProtKB:P024522290270 GO_CentralGO_REF:0000119
Col1a1Mousecollagen type I trimer part_ofIMPMGI:18571542290270 PMID:7790374MGIPMID:7790374
Col1a1Mousecollagen type I trimer part_ofISOComplexPortal:CPX-16502290270 ComplexPortalGO_REF:0000114
Col1a1Mousecollagen type I trimer part_ofIDA 2290270 PMID:8018053MGIPMID:8018053
Col1a1Mousecollagen-containing extracellular matrix is_active_inIBAPANTHER:PTN001166351 more ...2290270 GO_CentralGO_REF:0000033
Col1a1Mousecollagen-containing extracellular matrix located_inIDA 2290270 PMID:34368841MGIPMID:34368841
Col1a1Mousecollagen-containing extracellular matrix located_inHDA 2290270 PMID:22159717 more ...UniProtPMID:22159717 more ...
Col1a1Mousecytoplasm is_active_inIBAPANTHER:PTN000614497 more ...2290270 GO_CentralGO_REF:0000033
Col1a1Mousecytoplasm located_inIDA 2290270 PMID:29636669 and PMID:8018053MGIPMID:29636669 and PMID:8018053
Col1a1Mouseextracellular matrix located_inIDA 2290270 PMID:10878613 more ...MGIPMID:10878613 more ...
Col1a1Mouseextracellular region located_inTAS 2290270 ReactomeReactome:R-MMU-8985650
Col1a1Mouseextracellular space  ISOCol1a1 (Rattus norvegicus)9068941 RGDPMID:2659889 and REF_RGD_ID:2316226
Col1a1Mouseextracellular space located_inISOCol1a1 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Col1a1Mouseextracellular space located_inIDA 2290270 PMID:34368841MGIPMID:34368841
Col1a1Mouseextracellular space located_inHDA 2290270 PMID:24006456BHF-UCLPMID:24006456
Col1a1Mouseextracellular space located_inISOUniProtKB:P024522290270 GO_CentralGO_REF:0000119
Col1a1Mouseextracellular space is_active_inIBAPANTHER:PTN008390299 more ...2290270 GO_CentralGO_REF:0000033
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Molecular Function
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Imported Annotations - SMPDB

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Col1a1Mouseacenocoumarol pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00269
Col1a1Mousealteplase pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00280
Col1a1Mouseaminocaproic acid pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00286
Col1a1Mouseanistreplase pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00281
Col1a1Mouseaprotinin pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00288
Col1a1Mouseargatroban pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00276
Col1a1Mousebivalirudin pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00277
Col1a1Mousedicoumarol pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00656
Col1a1Mousedicoumarol pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00270
Col1a1Mouseenoxaparin pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00272
Col1a1Mousefondaparinux pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00273
Col1a1Mouseheparin pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00274
Col1a1Mousephenindione pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00655
Col1a1Mousereteplase pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00285
Col1a1Mousetranexamic acid pharmacodynamics pathway  ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00287
Col1a1Mousewarfarin pharmacodynamics pathway   ISOCOL1A1 (Homo sapiens)10402751 SMPDBSMP:00268
1 to 16 of 16 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Col1a1Mousecell-extracellular matrix signaling pathway  IEA 6907045 KEGGmmu:04512
Col1a1MouseEntamoebiasis pathway  IEA 6907045 KEGGmmu:05146

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Col1a1Mouseinterleukin-4 signaling pathway  ISOCOL1A1 (Homo sapiens)6484113 PIDPID:200022
Col1a1Mousesyndecan signaling pathway  ISOCOL1A1 (Homo sapiens)6484113 PIDPID:200156

1 to 20 of 101 rows
#
Reference Title
Reference Citation
1. The angiotensin type 1 receptor antagonist, eprosartan, attenuates the progression of renal disease in spontaneously hypertensive stroke-prone rats with accelerated hypertension. Abrahamsen CT, etal., J Pharmacol Exp Ther. 2002 Apr;301(1):21-8. doi: 10.1124/jpet.301.1.21.
2. Lack of association between osteoarthritis of the hip and gene polymorphisms of VDR, COL1A1, and COL2A1 in postmenopausal women. Aerssens J, etal., Arthritis Rheum. 1998 Nov;41(11):1946-50.
3. Combination of ADMSCs and chondrocytes reduces hypertrophy and improves the functional properties of osteoarthritic cartilage. Ahmed MR, etal., Osteoarthritis Cartilage. 2014 Nov;22(11):1894-901. doi: 10.1016/j.joca.2014.07.028. Epub 2014 Aug 13.
4. Wound healing genes and susceptibility to cutaneous leishmaniasis in Brazil: role of COL1A1. Almeida L, etal., Infect Genet Evol. 2015 Mar;30:225-9. doi: 10.1016/j.meegid.2014.12.034. Epub 2015 Jan 3.
5. Albumin and procollagen type I gene regulation in alcohol and viral-induced human liver disease. Annoni G, etal., Boll Ist Sieroter Milan. 1991-1992;70(1-2):391-7.
6. Polymorphism analysis in the COLIA1 gene of patients with thalassemia major and intermedia. Arisal O, etal., Haematologia (Budap). 2002;32(4):475-82.
7. Alteration of type I collagen in the radial artery of patients with end-stage renal disease. Bai Y, etal., Am J Med Sci. 2015 Apr;349(4):292-7. doi: 10.1097/MAJ.0000000000000408.
8. A novel, non-functional, COL1A1 polymorphism is not associated with lumbar disk disease in young male Greek subjects unlike that of the Sp1 site. Bei T, etal., Hormones (Athens). 2008 Jul-Sep;7(3):251-4.
9. Prevention of glomerulosclerosis by early cyclosporine treatment of experimental lupus nephritis. Bergijk EC, etal., Kidney Int. 1994 Dec;46(6):1663-73.
10. Ehlers-Danlos syndrome type VIIA and VIIB result from splice-junction mutations or genomic deletions that involve exon 6 in the COL1A1 and COL1A2 genes of type I collagen. Byers PH, etal., Am J Med Genet 1997 Oct 3;72(1):94-105.
11. ZFP36 protects lungs from intestinal I/R-induced injury and fibrosis through the CREBBP/p53/p21/Bax pathway. Cao Y, etal., Cell Death Dis. 2021 Jul 8;12(7):685. doi: 10.1038/s41419-021-03950-y.
12. MiR-133a regulates collagen 1A1: potential role of miR-133a in myocardial fibrosis in angiotensin II-dependent hypertension. Castoldi G, etal., J Cell Physiol. 2012 Feb;227(2):850-6. doi: 10.1002/jcp.22939.
13. First mouse model for combined osteogenesis imperfecta and Ehlers-Danlos syndrome. Chen F, etal., J Bone Miner Res. 2014 Jun;29(6):1412-23. doi: 10.1002/jbmr.2177.
14. A Chinese herbal medicine, Gexia-Zhuyu Tang (GZT), prevents dimethylnitrosamine-induced liver fibrosis through inhibition of hepatic stellate cells proliferation. Chen JY, etal., J Ethnopharmacol. 2012 Aug 1;142(3):811-8. doi: 10.1016/j.jep.2012.06.005. Epub 2012 Jun 15.
15. Single-nucleotide polymorphisms in the COL1A1 regulatory regions are associated with otosclerosis. Chen W, etal., Clin Genet. 2007 May;71(5):406-14.
16. High-flow-induced arterial remodeling in rats with different susceptibilities to cerebral aneurysms. Coutard M, etal., J Vasc Res. 2006;43(3):217-28. Epub 2006 Jan 20.
17. Outflow facility in mice with a targeted type I collagen mutation. Dai Y, etal., Invest Ophthalmol Vis Sci. 2009 Dec;50(12):5749-53. doi: 10.1167/iovs.08-3367. Epub 2009 Sep 24.
18. Procollagen type I gene expression and cell proliferation are increased in lipodermatosclerosis. Degiorgio-Miller AM, etal., Br J Dermatol. 2005 Feb;152(2):242-9.
19. High resolution molecular and histological analysis of renal disease progression in ZSF1 fa/faCP rats, a model of type 2 diabetic nephropathy. Dower K, etal., PLoS One. 2017 Jul 26;12(7):e0181861. doi: 10.1371/journal.pone.0181861. eCollection 2017.
20. TRPM7 channel regulates PDGF-BB-induced proliferation of hepatic stellate cells via PI3K and ERK pathways. Fang L, etal., Toxicol Appl Pharmacol. 2013 Nov 1;272(3):713-25. doi: 10.1016/j.taap.2013.08.009. Epub 2013 Aug 16.
1 to 20 of 101 rows
1 to 10 of 105 rows
PMID:1524678   PMID:1537326   PMID:1618338   PMID:1744131   PMID:1761577   PMID:1794049   PMID:1879336   PMID:1879363   PMID:1916105   PMID:2054384   PMID:2097519   PMID:2209468  
PMID:2387241   PMID:2402497   PMID:2450280   PMID:2567264   PMID:2824282   PMID:3116273   PMID:3172346   PMID:3340560   PMID:3467899   PMID:3502995   PMID:3841523   PMID:3960120  
PMID:6219867   PMID:6298597   PMID:6308457   PMID:6324198   PMID:6825169   PMID:6857446   PMID:7237558   PMID:7573384   PMID:7574488   PMID:7589890   PMID:7593259   PMID:7598807  
PMID:7629088   PMID:7704020   PMID:7754814   PMID:7775585   PMID:7790374   PMID:7813775   PMID:7873289   PMID:7919967   PMID:7924138   PMID:7937772   PMID:7964480   PMID:7964554  
PMID:8018053   PMID:8022775   PMID:8026631   PMID:8065328   PMID:8096090   PMID:8096378   PMID:8097422   PMID:8106463   PMID:8113105   PMID:8130375   PMID:8146196   PMID:8163675  
PMID:8204907   PMID:8240330   PMID:8268229   PMID:8328969   PMID:8369292   PMID:8373351   PMID:8408623   PMID:8449498   PMID:8524319   PMID:8535610   PMID:8563024   PMID:8569173  
PMID:8577708   PMID:8619363   PMID:8683100   PMID:8686743   PMID:8702912   PMID:8747929   PMID:8783182   PMID:8785585   PMID:8806434   PMID:8851045   PMID:8853993   PMID:8900172  
PMID:8906420   PMID:8944545   PMID:8952549   PMID:8984825   PMID:8986815   PMID:8988177   PMID:9030551   PMID:9101290   PMID:9164858   PMID:9213002   PMID:9286593   PMID:9390635  
PMID:9415455   PMID:9426396   PMID:9556061   PMID:9584177   PMID:9614124   PMID:9664687   PMID:9755172   PMID:9796779   PMID:9801322   PMID:9832566   PMID:9853961   PMID:9880236  
PMID:9880238   PMID:9887097   PMID:9922384   PMID:10021460   PMID:10072783   PMID:10213384   PMID:10349636   PMID:10357935   PMID:10429947   PMID:10473125   PMID:10545953   PMID:10608859  
1 to 10 of 105 rows



Col1a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,827,050 - 94,843,868 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,827,050 - 94,843,868 (+)EnsemblGRCm39 Ensembl
GRCm381194,936,224 - 94,953,042 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,936,224 - 94,953,042 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,797,584 - 94,813,181 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,752,360 - 94,767,957 (+)NCBIMGSCv36mm8
Celera11104,549,617 - 104,565,301 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
COL1A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,184,101 - 50,201,631 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,184,101 - 50,201,632 (-)EnsemblGRCh38hg38GRCh38
GRCh371748,261,462 - 48,278,992 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,616,456 - 45,633,999 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,616,455 - 45,633,992NCBI
Celera1744,722,303 - 44,739,829 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,630,129 - 43,647,463 (-)NCBIHuRef
CHM1_11748,325,754 - 48,343,284 (-)NCBICHM1_1
T2T-CHM13v2.01751,051,162 - 51,068,680 (-)NCBIT2T-CHM13v2.0
Col1a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,380,458 - 80,397,461 (+)NCBIGRCr8
mRatBN7.21079,883,622 - 79,900,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,883,622 - 79,900,624 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1084,832,832 - 84,849,838 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01084,330,903 - 84,347,909 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01079,723,993 - 79,740,998 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,745,801 - 82,762,790 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,745,801 - 82,762,789 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01082,563,434 - 82,580,364 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,622,438 - 83,639,368 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,636,918 - 83,653,733 (+)NCBI
Celera1078,658,450 - 78,675,438 (+)NCBICelera
Cytogenetic Map10q26NCBI
Col1a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,468,290 - 11,483,073 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,468,156 - 11,484,410 (+)NCBIChiLan1.0ChiLan1.0
COL1A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,373,893 - 66,390,381 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,180,391 - 71,196,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,274,349 - 44,291,764 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,149,277 - 49,166,833 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,150,677 - 49,166,677 (-)Ensemblpanpan1.1panPan2
COL1A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,183,852 - 26,199,927 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,183,852 - 26,199,927 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,576,913 - 25,592,983 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,978,359 - 26,994,434 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl926,978,317 - 26,994,453 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1925,746,094 - 25,762,176 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,004,757 - 26,020,835 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,134,702 - 26,150,789 (-)NCBIUU_Cfam_GSD_1.0
Col1a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,609,297 - 25,626,616 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,448,654 - 11,464,444 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,448,552 - 11,465,836 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL1A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,379,090 - 26,397,004 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,379,087 - 26,397,180 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
COL1A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11643,134,648 - 43,152,313 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1643,134,779 - 43,150,930 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,850,099 - 13,867,746 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col1a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,168,797 - 6,183,071 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,167,504 - 6,183,208 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Col1a1
749 total Variants

Predicted Target Of
Summary Value
Count of predictions:1138
Count of miRNA genes:561
Interacting mature miRNAs:683
Transcripts:ENSMUST00000001547, ENSMUST00000139974, ENSMUST00000148046, ENSMUST00000148593
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 59 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse

1 to 10 of 59 rows
PMC114431P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,936,373 - 94,936,508UniSTSGRCm38
MGSCv371194,797,687 - 94,797,822UniSTSGRCm37
Celera11104,549,720 - 104,549,855UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
PMC150841P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,938,082 - 94,938,538UniSTSGRCm38
MGSCv371194,799,396 - 94,799,852UniSTSGRCm37
Celera11104,551,429 - 104,551,885UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
PMC151926P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,951,483 - 94,951,818UniSTSGRCm38
MGSCv371194,812,797 - 94,813,132UniSTSGRCm37
Celera11104,564,917 - 104,565,252UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
PMC316641P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,946,308 - 94,947,113UniSTSGRCm38
MGSCv371194,807,622 - 94,808,427UniSTSGRCm37
Celera11104,559,742 - 104,560,547UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
Col1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371194,799,361 - 94,799,574UniSTSGRCm37
MGSCv371194,813,939 - 94,814,045UniSTSGRCm37
MGSCv371194,808,969 - 94,809,237UniSTSGRCm37
Celera11104,566,056 - 104,566,159UniSTS
Celera11104,561,089 - 104,561,357UniSTS
Celera11104,551,394 - 104,551,607UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
cM Map1156.0UniSTS
cM Map1156.0UniSTS
PMC34669P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,950,546 - 94,951,199UniSTSGRCm38
MGSCv371194,811,860 - 94,812,513UniSTSGRCm37
Celera11104,563,980 - 104,564,633UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
COL1A1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,947,655 - 94,947,923UniSTSGRCm38
MGSCv371194,808,969 - 94,809,237UniSTSGRCm37
Celera11104,561,089 - 104,561,357UniSTS
Cytogenetic Map11DUniSTS
Col1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,952,625 - 94,952,731UniSTSGRCm38
MGSCv371194,813,939 - 94,814,045UniSTSGRCm37
Celera11104,566,056 - 104,566,159UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
Col1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
Col1a1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,938,047 - 94,938,260UniSTSGRCm38
MGSCv371194,799,361 - 94,799,574UniSTSGRCm37
Celera11104,551,394 - 104,551,607UniSTS
Cytogenetic Map11DUniSTS






1 to 30 of 30 rows
RefSeq Transcripts NM_007742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH001861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ032538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY133378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K01688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M14423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M17491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M24372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S67530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U03419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U08020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U38544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X06753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X54876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X57981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 30 rows

Ensembl Acc Id: ENSMUST00000001547   ⟹   ENSMUSP00000001547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,827,050 - 94,843,868 (+)Ensembl
GRCm38.p6 Ensembl1194,936,224 - 94,953,042 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,828,512 - 94,828,929 (+)Ensembl
GRCm38.p6 Ensembl1194,937,686 - 94,938,103 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,836,194 - 94,836,855 (+)Ensembl
GRCm38.p6 Ensembl1194,945,368 - 94,946,029 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,829,838 - 94,830,567 (+)Ensembl
GRCm38.p6 Ensembl1194,939,012 - 94,939,741 (+)Ensembl
RefSeq Acc Id: NM_007742   ⟹   NP_031768
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,827,050 - 94,843,868 (+)NCBI
GRCm381194,936,224 - 94,953,042 (+)NCBI
MGSCv371194,797,584 - 94,813,181 (+)RGD
Celera11104,549,617 - 104,565,301 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031768   ⟸   NM_007742
- Peptide Label: preproprotein
- UniProtKB: Q6PCL3 (UniProtKB/Swiss-Prot),   Q63919 (UniProtKB/Swiss-Prot),   Q61427 (UniProtKB/Swiss-Prot),   Q61367 (UniProtKB/Swiss-Prot),   Q60635 (UniProtKB/Swiss-Prot),   Q53WT0 (UniProtKB/Swiss-Prot),   Q810J9 (UniProtKB/Swiss-Prot),   P11087 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000001547   ⟸   ENSMUST00000001547
Fibrillar collagen NC1   VWFC

Name Modeler Protein Id AA Range Protein Structure
AF-P11087-F1-model_v2 AlphaFold P11087 1-1453 view protein structure

RGD ID:6820648
Promoter ID:MM_KWN:9302
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000004184,   OTTMUST00000072724
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,797,116 - 94,797,762 (+)MPROMDB
RGD ID:6849502
Promoter ID:EP07067
Type:single initiation site
Name:MM_CA11
Description:alpha 1 type I collagen, COL1A1 or COLA1 gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 134; Mammalian alpha 1 type I collagen
Tissues & Cell Lines:fetus
Experiment Methods:Nuclease protection with homologous sequence ladder
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371194,797,566 - 94,797,626EPD
MGSCv361194,797,566 - 94,797,626EPD
RGD ID:6820649
Promoter ID:MM_KWN:9303
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000004185
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,798,101 - 94,799,307 (+)MPROMDB
RGD ID:6820647
Promoter ID:MM_KWN:9304
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000072725
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,799,556 - 94,800,767 (+)MPROMDB
RGD ID:6820650
Promoter ID:MM_KWN:9305
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000004186
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361194,805,916 - 94,806,857 (+)MPROMDB
RGD ID:8676236
Promoter ID:EPDNEW_M16149
Type:multiple initiation site
Name:Col1a1_1
Description:Mus musculus collagen, type I, alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381194,936,253 - 94,936,313EPDNEW


1 to 40 of 42 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000001506 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000001547 ENTREZGENE
  ENSMUST00000001547.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.1000 UniProtKB/Swiss-Prot
  Complement Module, domain 1 UniProtKB/Swiss-Prot
InterPro Collagen UniProtKB/Swiss-Prot
  Collagen_superfamily UniProtKB/Swiss-Prot
  Fib_collagen_C UniProtKB/Swiss-Prot
  VWF_dom UniProtKB/Swiss-Prot
KEGG Report mmu:12842 UniProtKB/Swiss-Prot
MGD MGI:88467 ENTREZGENE
NCBI Gene 12842 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/Swiss-Prot
  COLLAGEN TRIPLE HELIX REPEAT UniProtKB/Swiss-Prot
Pfam COLFI UniProtKB/Swiss-Prot
  Collagen UniProtKB/Swiss-Prot
  VWC UniProtKB/Swiss-Prot
PharmGKB COL1A1 RGD
PhenoGen Col1a1 PhenoGen
PROSITE NC1_FIB UniProtKB/Swiss-Prot
  VWFC_1 UniProtKB/Swiss-Prot
  VWFC_2 UniProtKB/Swiss-Prot
SMART COLFI UniProtKB/Swiss-Prot
  VWC UniProtKB/Swiss-Prot
Superfamily-SCOP FnI-like domain UniProtKB/Swiss-Prot
UniProt CO1A1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q53WT0 ENTREZGENE
  Q60635 ENTREZGENE
  Q60785_MOUSE UniProtKB/TrEMBL
  Q61367 ENTREZGENE
  Q61427 ENTREZGENE
  Q63919 ENTREZGENE
  Q6PCL3 ENTREZGENE
  Q810J9 ENTREZGENE
  Q99LL6_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q53WT0 UniProtKB/Swiss-Prot
  Q60635 UniProtKB/Swiss-Prot
  Q61367 UniProtKB/Swiss-Prot
  Q61427 UniProtKB/Swiss-Prot
  Q63919 UniProtKB/Swiss-Prot
1 to 40 of 42 rows