Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Col9a3 (collagen, type IX, alpha 3) Mus musculus
Analyze
Symbol: Col9a3
Name: collagen, type IX, alpha 3
Description: Predicted to have extracellular matrix structural constituent. Involved in female gonad development and male gonad development. Localizes to the collagen-containing extracellular matrix. Human ortholog(s) of this gene implicated in multiple epiphyseal dysplasia 3 and osteochondrodysplasia. Is expressed in several structures, including brain; cranium; eye; hindlimb digit mesenchyme; and reproductive system. Orthologous to human COL9A3 (collagen type IX alpha 3 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 5-azacytidine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AV006866; collagen alpha-3(IX) chain; procollagen, type IX, alpha 3
Orthologs:
Homo sapiens (human) : COL9A3 (collagen type IX alpha 3 chain)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Col9a3 (collagen type IX alpha 3 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col9a3 (collagen type IX alpha 3 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL9A3 (collagen type IX alpha 3 chain)
Canis lupus familiaris (dog) : COL9A3 (collagen type IX alpha 3 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col9a3 (collagen type IX alpha 3 chain)
Sus scrofa (pig) : COL9A3 (collagen type IX alpha 3 chain)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm382180,598,102 - 180,622,185 (+)NCBIGRCm38GRCm38mm10GRCm38
MGSCv372180,332,927 - 180,356,890 (+)NCBIGRCm37mm9NCBIm37
MGSCv362180,527,652 - 180,551,593 (+)NCBImm8
Celera2184,684,058 - 184,708,019 (+)NCBICelera
Cytogenetic Map2 H4NCBI
cM Map2103.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (GRCm38)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Additional Information

External Database Links
 
More on Col9a3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: mm9 mm10
MGI Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1321050
Created: 2005-01-12
Species: Mus musculus
Last Modified: 2019-09-12
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.