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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular matrix assembly
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Accession:GO:0085029 term browser browse the term
Definition:The aggregation, arrangement and bonding together of the extracellular matrix.


show annotations for term's descendants           Sort by:
extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a2 collagen type I alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856327 (PMID:22910579)		 Ensembl
RGD		 PMID:22910579 GO_REF:0000107 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:19114551) RGD PMID:19114551 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Eln elastin involved_in IEA
ISO		 GO_REF:0000107
(MGI:5142190|PMID:20576933)		 Ensembl
RGD		 PMID:20576933 GO_REF:0000107 MGI:5142190 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928 		JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 acts_upstream_of_or_within ISO (PMID:28774593) RGD PMID:28774593 NCBI chr10:85,345,434...85,357,998
Ensembl chr10:85,346,126...85,427,330 		JBrowse link
G Gas6 growth arrest specific 6 involved_in IEP PMID:18374201 UniProt PMID:18374201 RGD:8554638 NCBI chr16:76,045,430...76,075,904
Ensembl chr16:76,045,426...76,075,904 		JBrowse link
G Gpm6b glycoprotein m6b involved_in ISO
ISS		 (PMID:21638316)
GO_REF:0000024		 RGD
UniProt		 PMID:21638316 GO_REF:0000024 NCBI chr  X:28,057,788...28,204,409
Ensembl chr  X:28,059,450...28,204,211 		JBrowse link
G Hapln2 hyaluronan and proteoglycan link protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4437572 (PMID:20181608)		 Ensembl
RGD		 PMID:20181608 GO_REF:0000107 NCBI chr 2:173,488,909...173,496,824
Ensembl chr 2:173,491,160...173,496,588 		JBrowse link
G Has1 hyaluronan synthase 1 involved_in ISO
IBA		 (MGI:5508296|PMID:10455188)
GO_REF:0000033		 RGD
GO_Central		 PMID:10455188 GO_REF:0000033 MGI:5508296 NCBI chr 1:58,693,411...58,705,653
Ensembl chr 1:58,693,411...58,705,397 		JBrowse link
G Has2 hyaluronan synthase 2 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(MGI:5508296|PMID:10455188)		 UniProt
GO_Central
RGD		 PMID:10455188 GO_REF:0000024 GO_REF:0000033 MGI:5508296 NCBI chr 7:88,113,326...88,139,337
Ensembl chr 7:88,113,326...88,128,933 		JBrowse link
G Has3 hyaluronan synthase 3 involved_in ISO
IBA		 (MGI:5508296|PMID:10455188)
GO_REF:0000033		 RGD
GO_Central		 PMID:10455188 GO_REF:0000033 MGI:5508296 NCBI chr19:34,768,421...34,782,170
Ensembl chr19:34,771,982...34,782,592 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:4356107 (PMID:19706528)		 Ensembl
RGD		 PMID:19706528 GO_REF:0000107 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:23867277) RGD PMID:23867277 NCBI chr13:67,949,780...67,987,434
Ensembl chr13:67,949,780...67,987,459 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856877 (PMID:22910579)		 Ensembl
RGD		 PMID:22910579 GO_REF:0000107 NCBI chr19:34,162,337...34,245,786
Ensembl chr19:34,162,341...34,245,749 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of ISO MGI:2176205|MGI:2385468 (PMID:20881014) RGD PMID:20881014 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4820704|PMID:19734317)
(PMID:19734317)		 UniProt
RGD		 PMID:19734317 GO_REF:0000024 MGI:4820704 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585 		JBrowse link
G Lamb2 laminin subunit beta 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:104,833,810...104,875,405
Ensembl chr13:104,833,873...104,875,405 		JBrowse link
G Ntn4 netrin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:28,186,611...28,300,390
Ensembl chr 7:28,186,611...28,300,390 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3620600|MGI:3620601|MGI:3620603 (PMID:16467571)		 Ensembl
RGD		 PMID:16467571 GO_REF:0000107 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
G Pxdn peroxidasin involved_in
acts_upstream_of		 ISO (PMID:25708780), (PMID:27697841), (PMID:32571911)
(MGI:6109597|PMID:25708780), (MGI:6444560|PMID:32571911), (MGI:6870970|PMID:22842973)
(PMID:32543734)		 RGD PMID:22842973 PMID:25708780 PMID:27697841 PMID:32543734 PMID:32571911 MGI:6109597 MGI:6444560 MGI:6870970 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345 		JBrowse link
G Ramp2 receptor activity modifying protein 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3772552|PMID:18097473)		 UniProt
RGD		 PMID:18097473 GO_REF:0000024 MGI:3772552 NCBI chr10:86,187,366...86,190,692
Ensembl chr10:86,188,812...86,231,829 		JBrowse link
elastic fiber assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856097|MGI:3588774 (PMID:16338116), (PMID:20889), (PMID:3385878), (PMID:937819) RGD PMID:20889 PMID:937819 PMID:3385878 PMID:16338116 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1860700 (PMID:24820199) RGD PMID:24820199 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Efemp2 EGF containing fibulin extracellular matrix protein 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:18973305), (PMID:27339457)
MGI:4410301 (PMID:19855011)
(MGI:3619755|PMID:16478991), (MGI:4947512|PMID:20019329), (MGI:5660411|PMID:26178373), (MGI:6140729|PMID:28508064), (MGI:6158865|PMID:26711913)		 RGD PMID:16478991 PMID:18973305 PMID:19855011 PMID:20019329 PMID:26178373 More... MGI:3619755 MGI:4947512 MGI:5660411 MGI:6140729 MGI:6158865 NCBI chr 1:202,781,692...202,789,784
Ensembl chr 1:202,781,665...202,789,414 		JBrowse link
G Eln elastin TAS RGD PMID:10090127 RGD:731206 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:5605894 NCBI chr 6:25,455,974...25,463,713
Ensembl chr 6:25,445,298...25,463,698 		JBrowse link
G Fbln5 fibulin 5 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(MGI:2681470|PMID:11805835), (MGI:2681471|PMID:11805834)
(PMID:17035250)		 UniProt
GO_Central
Ensembl
RGD		 PMID:11805834 PMID:11805835 PMID:17035250 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:2681470 MGI:2681471 NCBI chr 6:120,899,219...120,977,829
Ensembl chr 6:120,899,224...120,977,755 		JBrowse link
G Lox lysyl oxidase acts_upstream_of_or_within IMP
ISO		 MGI:3610732 (PMID:12417550), (PMID:16192629), (PMID:23413430) RGD PMID:12417550 PMID:16192629 PMID:23413430 PMID:16432278 RGD:1600669 NCBI chr18:45,964,544...45,977,431
Ensembl chr18:45,967,343...46,041,477 		JBrowse link
G Ltbp4 latent transforming growth factor beta binding protein 4 involved_in ISO (MGI:5638486|PMID:25713297) RGD PMID:25713297 MGI:5638486 NCBI chr 1:82,600,136...82,634,346
Ensembl chr 1:82,600,136...82,632,178 		JBrowse link
G Mfap4 microfibril associated protein 4 involved_in ISO (PMID:22355679) RGD PMID:22355679 NCBI chr10:46,167,158...46,170,176
Ensembl chr10:46,167,217...46,170,155 		JBrowse link
G Myh11 myosin heavy chain 11 involved_in ISO
IEA		 (PMID:16444274)
GO_REF:0000107		 RGD
Ensembl		 PMID:16444274 GO_REF:0000107 NCBI chr10:743,364...838,459
Ensembl chr10:743,685...838,459 		JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 acts_upstream_of_or_within ISO (PMID:19940141) RGD PMID:19940141 NCBI chr 8:60,384,636...60,984,419
Ensembl chr 8:60,386,875...61,024,995 		JBrowse link
G Tnxb tenascin XB involved_in ISO
IEA		 (PMID:15102077)
GO_REF:0000107		 RGD
Ensembl		 PMID:15102077 GO_REF:0000107
negative regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Antxr1 ANTXR cell adhesion molecule 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5754386 (PMID:25572963)		 Ensembl
RGD		 PMID:25572963 GO_REF:0000107 NCBI chr 4:119,590,770...119,778,232
Ensembl chr 4:119,590,771...119,778,232 		JBrowse link
G Mir145 microRNA 145 acts_upstream_of
involved_in		 ISO UniProtKB:P01137 (PMID:25323858)
(PMID:25704091)		 RGD PMID:25323858 PMID:25704091 NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Mir18a microRNA 18a involved_in ISO (PMID:28131417) RGD PMID:28131417 NCBI chr15:92,180,765...92,180,860
Ensembl chr15:92,180,765...92,180,860 		JBrowse link
G Mir19a microRNA 19a acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr15:92,180,912...92,180,993
Ensembl chr15:92,180,912...92,180,993 		JBrowse link
G Mir19b1 microRNA 19b-1 acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr15:92,181,214...92,181,300
Ensembl chr15:92,181,214...92,181,300 		JBrowse link
G Mir19b2 microRNA 19b-2 acts_upstream_of ISO (PMID:27098600) RGD PMID:27098600 NCBI chr  X:132,422,072...132,422,167
Ensembl chr  X:132,422,072...132,422,167 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:28095798) RGD PMID:28095798 NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Mir9-3 microRNA 9-3 acts_upstream_of ISO (PMID:26315535) RGD PMID:26315535 NCBI chr 1:133,440,049...133,440,138 JBrowse link
G Mir98 microRNA 98 acts_upstream_of ISO (PMID:28251559) RGD PMID:28251559 NCBI chr  X:20,981,235...20,981,342
Ensembl chr  X:20,981,235...20,981,342 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma involved_in ISO (PMID:25704091) RGD PMID:25704091 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Tgfbr3 transforming growth factor beta receptor 3 involved_in ISO (PMID:30729664) RGD PMID:30729664 NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341 		JBrowse link
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO UniProtKB:Q86SQ0|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr13:29,493,554...29,715,151
Ensembl chr13:29,493,596...29,715,146 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:113,677,345...113,859,957
Ensembl chr 8:113,677,284...113,858,731 		JBrowse link
G Dag1 dystroglycan 1 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325 		JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 involved_in ISO
IEA		 UniProtKB:Q7Z460|UniProtKB:Q86SQ0 (PMID:23940118)
GO_REF:0000107		 RGD
Ensembl		 PMID:23940118 GO_REF:0000107 NCBI chr 8:45,003,543...45,051,541
Ensembl chr 8:45,003,538...45,051,522 		JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 involved_in ISO UniProtKB:Q7Z460|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr11:54,859,173...55,078,212
Ensembl chr11:54,859,135...55,078,467 		JBrowse link
positive regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
(PMID:30729664)		 Ensembl
RGD		 PMID:30729664 GO_REF:0000107 NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977 		JBrowse link
G Emilin1 elastin microfibril interfacer 1 involved_in ISO (MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:5605894 NCBI chr 6:25,455,974...25,463,713
Ensembl chr 6:25,445,298...25,463,698 		JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 IMP RGD PMID:27488450 RGD:152995505 NCBI chr 5:158,563,545...158,576,698
Ensembl chr 5:158,563,567...158,576,693 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of ISO (PMID:30729664) RGD PMID:30729664 NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Rgcc regulator of cell cycle involved_in ISO (PMID:21307346) RGD PMID:21307346 NCBI chr15:54,662,483...54,675,320
Ensembl chr15:54,662,483...54,681,141 		JBrowse link
G Smad3 SMAD family member 3 involved_in
acts_upstream_of		 ISO (PMID:21307346)
(PMID:30729664)		 RGD PMID:21307346 PMID:30729664 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smad4 SMAD family member 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:26747772)		 Ensembl
RGD		 PMID:26747772 GO_REF:0000107 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2176205|MGI:2385468 (PMID:20881014) RGD PMID:20881014 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of ISO (MGI:5775885|PMID:24279830) RGD PMID:24279830 MGI:5775885 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of
involved_in		 ISO
IEA		 (PMID:28251559)
GO_REF:0000107		 RGD
Ensembl		 PMID:28251559 GO_REF:0000107 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
regulation of extracellular matrix assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen involved_in ISO UniProtKB:P00797 (PMID:17416596) RGD PMID:17416596 NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977 		JBrowse link
G Has2 hyaluronan synthase 2 IMP RGD PMID:27094859 RGD:12910548 NCBI chr 7:88,113,326...88,139,337
Ensembl chr 7:88,113,326...88,128,933 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (MGI:5298073|PMID:21311046) RGD PMID:21311046 MGI:5298073 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 acts_upstream_of ISO (MGI:6370101|PMID:31319059) RGD PMID:31319059 MGI:6370101 NCBI chr 5:132,000,013...132,019,658
Ensembl chr 5:132,000,015...132,019,592 		JBrowse link
vitelline membrane formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:17881493) RGD PMID:17881493 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    cellular process 18524
      cellular component organization or biogenesis 7070
        cellular component organization 6819
          cellular component assembly 3184
            extracellular matrix assembly 58
              basement membrane assembly + 12
              biofilm matrix assembly 0
              elastic fiber assembly 12
              negative regulation of extracellular matrix assembly + 11
              positive regulation of extracellular matrix assembly + 15
              regulation of extracellular matrix assembly + 28
              vitelline membrane formation + 1
Path 2
Term Annotations click to browse term
  biological_process 20115
    cellular process 18524
      cellular component organization or biogenesis 7070
        cellular component organization 6819
          extracellular structure organization 338
            extracellular matrix organization 337
              extracellular matrix assembly 58
                basement membrane assembly + 12
                biofilm matrix assembly 0
                elastic fiber assembly 12
                negative regulation of extracellular matrix assembly + 11
                positive regulation of extracellular matrix assembly + 15
                regulation of extracellular matrix assembly + 28
                vitelline membrane formation + 1
paths to the root