Optc (opticin) - Rat Genome Database
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Gene: Optc (opticin) Mus musculus
Analyze
Symbol: Optc
Name: opticin
RGD ID: 1312632
Description: Involved in collagen fibril organization and negative regulation of angiogenesis. Localizes to extracellular matrix. Is expressed in ciliary body; ciliary epithelium; and retina. Orthologous to human OPTC (opticin); INTERACTS WITH 1,2-dimethylhydrazine; 4,4'-diaminodiphenylmethane; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MGC117622; oculoglycan
Orthologs:
Homo sapiens (human) : OPTC (opticin)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Optc (opticin)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Optc (opticin)
Pan paniscus (bonobo/pygmy chimpanzee) : OPTC (opticin)
Canis lupus familiaris (dog) : OPTC (opticin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Optc (opticin)
Sus scrofa (pig) : OPTC (opticin)
Chlorocebus sabaeus (African green monkey) : OPTC (opticin)
Heterocephalus glaber (naked mole-rat) : Optc (opticin)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,824,931 - 133,837,344 (-)NCBI
GRCm381133,897,193 - 133,909,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,897,199 - 133,907,999 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,793,770 - 135,804,576 (-)NCBIGRCm37mm9NCBIm37
MGSCv361135,713,610 - 135,723,583 (-)NCBImm8
Celera1136,512,403 - 136,523,385 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11527931   PMID:12019215   PMID:12477932   PMID:16141072   PMID:16141073   PMID:18778700   PMID:20568247  
PMID:21267068   PMID:21677750   PMID:22159013   PMID:22669977   PMID:29323130   PMID:32764753  


Genomics

Comparative Map Data
Optc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,824,931 - 133,837,344 (-)NCBI
GRCm381133,897,193 - 133,909,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,897,199 - 133,907,999 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,793,770 - 135,804,576 (-)NCBIGRCm37mm9NCBIm37
MGSCv361135,713,610 - 135,723,583 (-)NCBImm8
Celera1136,512,403 - 136,523,385 (-)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.02NCBI
OPTC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1203,494,153 - 203,508,949 (+)EnsemblGRCh38hg38GRCh38
GRCh381203,494,153 - 203,508,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371203,463,271 - 203,478,077 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,729,894 - 201,744,700 (+)NCBINCBI36hg18NCBI36
Build 341200,194,927 - 200,209,734NCBI
Celera1176,592,905 - 176,608,331 (+)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1174,628,320 - 174,643,467 (+)NCBIHuRef
CHM1_11204,886,108 - 204,900,814 (+)NCBICHM1_1
Optc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01350,735,509 - 50,748,908 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1350,735,599 - 50,746,354 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01355,788,741 - 55,802,131 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,846,756 - 46,858,100 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11346,862,443 - 46,870,421 (-)NCBI
Celera1345,684,009 - 45,694,574 (-)NCBICelera
Cytogenetic Map13q13NCBI
Optc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,445,677 - 39,453,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,446,875 - 39,458,571 (+)NCBIChiLan1.0ChiLan1.0
OPTC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11183,391,155 - 183,407,509 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1183,391,155 - 183,407,509 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01179,097,003 - 179,113,903 (+)NCBIMhudiblu_PPA_v0panPan3
OPTC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl38215,404 - 223,247 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.138215,404 - 223,247 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Optc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365671,142,994 - 1,152,311 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OPTC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl964,211,477 - 64,220,981 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1964,211,477 - 64,220,982 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2970,501,760 - 70,514,591 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OPTC
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2525,835,906 - 25,839,749 (-)Ensembl
ChlSab1.12525,835,809 - 25,840,282 (-)NCBI
Optc
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248077,389,534 - 7,399,824 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163880843153681816Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173716016147249632Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74477076148839837Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)176000000148900000Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782314261147249632Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182665468135687641Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194200000148900000Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194200000172200000Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195600000162200000Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1103040804137040937Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1104005680191493284Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109568206143568206Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109710525143710742Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110625442144625561Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110625442144625561Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112081092168358833Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112081092175641372Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112203268146203348Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116363098150363199Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117600000180000000Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118171982152172078Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121800000139800000Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121800000153900000Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121800000154000000Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121800000165000000Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122100000165000000Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1123000000157000000Mouse
1301488Tir3b_mtrypansomiasis infection response 3b (mouse)Not determined1128551097157361794Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128800000181500000Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129255120163255255Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131228571165311895Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:926
Count of miRNA genes:435
Interacting mature miRNAs:491
Transcripts:ENSMUST00000124051, ENSMUST00000124245, ENSMUST00000126123, ENSMUST00000149380, ENSMUST00000153617
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001160420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_054076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_878322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA223016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF333980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF333981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW124672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY077682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ976559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000124051   ⟹   ENSMUSP00000120568
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1133,897,199 - 133,907,172 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124245
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1133,897,199 - 133,901,327 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126123   ⟹   ENSMUSP00000117086
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1133,900,834 - 133,907,002 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149380   ⟹   ENSMUSP00000115661
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1133,897,699 - 133,907,126 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153617   ⟹   ENSMUSP00000123262
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1133,897,200 - 133,907,999 (-)Ensembl
RefSeq Acc Id: NM_001160420   ⟹   NP_001153892
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,931 - 133,835,737 (-)NCBI
GRCm381133,897,193 - 133,907,999 (-)NCBI
MGSCv371135,793,770 - 135,804,576 (-)RGD
Celera1136,512,403 - 136,523,385 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001160421   ⟹   NP_001153893
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,931 - 133,834,911 (-)NCBI
GRCm381133,897,193 - 133,907,173 (-)NCBI
MGSCv371135,793,770 - 135,804,576 (-)RGD
Celera1136,512,403 - 136,523,385 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001160422   ⟹   NP_001153894
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,828,572 - 133,834,911 (-)NCBI
GRCm381133,900,834 - 133,907,173 (-)NCBI
MGSCv371135,793,770 - 135,804,576 (-)RGD
Celera1136,512,403 - 136,523,385 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_054076   ⟹   NP_473417
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,931 - 133,834,911 (-)NCBI
GRCm381133,897,193 - 133,907,173 (-)NCBI
MGSCv371135,793,770 - 135,804,576 (-)RGD
Celera1136,512,403 - 136,523,385 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529660   ⟹   XP_006529723
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,937 - 133,836,329 (-)NCBI
GRCm381133,897,199 - 133,908,591 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529661   ⟹   XP_006529724
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,937 - 133,836,185 (-)NCBI
GRCm381133,897,199 - 133,908,443 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248028   ⟹   XP_011246330
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,937 - 133,837,344 (-)NCBI
GRCm381133,897,199 - 133,909,679 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254587   ⟹   XP_030110447
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,937 - 133,836,456 (-)NCBI
GRCm381133,897,199 - 133,908,718 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254589   ⟹   XP_030110449
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,937 - 133,837,344 (-)NCBI
GRCm381133,897,199 - 133,909,688 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165400   ⟹   XP_036021293
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,937 - 133,837,344 (-)NCBI
RefSeq Acc Id: XM_036165406   ⟹   XP_036021299
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,824,937 - 133,836,208 (-)NCBI
RefSeq Acc Id: XR_878322
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,826,141 - 133,837,344 (-)NCBI
GRCm381133,898,403 - 133,909,688 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_473417   ⟸   NM_054076
- Peptide Label: isoform 1
- UniProtKB: Q920A0 (UniProtKB/Swiss-Prot),   G3UVW2 (UniProtKB/TrEMBL),   Q3U5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153892   ⟸   NM_001160420
- Peptide Label: isoform 2
- UniProtKB: E9PUR1 (UniProtKB/TrEMBL),   Q3U5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153893   ⟸   NM_001160421
- Peptide Label: isoform 2
- UniProtKB: E9PUR1 (UniProtKB/TrEMBL),   Q14BF5 (UniProtKB/TrEMBL),   Q3U5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153894   ⟸   NM_001160422
- Peptide Label: isoform 4
- UniProtKB: Q4KL49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529723   ⟸   XM_006529660
- Peptide Label: isoform X2
- UniProtKB: G3UVW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529724   ⟸   XM_006529661
- Peptide Label: isoform X2
- UniProtKB: G3UVW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246330   ⟸   XM_011248028
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030110449   ⟸   XM_030254589
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030110447   ⟸   XM_030254587
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000120568   ⟸   ENSMUST00000124051
RefSeq Acc Id: ENSMUSP00000117086   ⟸   ENSMUST00000126123
RefSeq Acc Id: ENSMUSP00000115661   ⟸   ENSMUST00000149380
RefSeq Acc Id: ENSMUSP00000123262   ⟸   ENSMUST00000153617
RefSeq Acc Id: XP_036021293   ⟸   XM_036165400
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036021299   ⟸   XM_036165406
- Peptide Label: isoform X5
Protein Domains
LRRNT

Promoters
RGD ID:6874980
Promoter ID:EPDNEW_M941
Type:single initiation site
Name:Optc_1
Description:Mus musculus opticin , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381133,908,010 - 133,908,070EPDNEW
RGD ID:6818207
Promoter ID:MM_KWN:2129
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001160420
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361135,805,246 - 135,805,746 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2151113 AgrOrtholog
Ensembl Genes ENSMUSG00000010311 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000115661 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000117086 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000120568 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000123262 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000124051 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000126123 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000149380 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000153617 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:269120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2151113 ENTREZGENE
NCBI Gene 269120 ENTREZGENE
Pfam LRR_1 UniProtKB/TrEMBL
  LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Optc PhenoGen
PROSITE LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.59985 ENTREZGENE
UniProt E9PUR1 ENTREZGENE, UniProtKB/TrEMBL
  F6Z4X6_MOUSE UniProtKB/TrEMBL
  G3UVW2 ENTREZGENE, UniProtKB/TrEMBL
  OPT_MOUSE UniProtKB/Swiss-Prot
  Q14BF5 ENTREZGENE, UniProtKB/TrEMBL
  Q3U5A9 ENTREZGENE, UniProtKB/TrEMBL
  Q4KL49 ENTREZGENE, UniProtKB/TrEMBL
  Q920A0 ENTREZGENE
UniProt Secondary Q8K3K2 UniProtKB/Swiss-Prot
  Q91ZZ9 UniProtKB/Swiss-Prot