Prickle1 (prickle planar cell polarity protein 1) - Rat Genome Database

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Pathways
Gene: Prickle1 (prickle planar cell polarity protein 1) Mus musculus
Analyze
Symbol: Prickle1
Name: prickle planar cell polarity protein 1
RGD ID: 1618248
MGI Page MGI
Description: Predicted to enable zinc ion binding activity. Involved in several processes, including embryonic morphogenesis; extracellular matrix organization; and plasma membrane bounded cell projection organization. Acts upstream of or within aorta development and coronary vasculature development. Located in nucleus. Part of proteasome complex. Is active in cell trailing edge and membrane. Is expressed in several structures, including brain; embryo mesenchyme; genitourinary system; limb; and sensory organ. Used to study autism spectrum disorder; autosomal recessive Robinow syndrome; progressive myoclonus epilepsy 1B; and velocardiofacial syndrome. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 1B. Orthologous to human PRICKLE1 (prickle planar cell polarity protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110058P22Rik; AW215793; b2b019C; b2b019Clo; mpk; mpk1; Pk1; Prickle; prickle homolog 1; prickle like 1; prickle-like protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391593,396,992 - 93,494,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1593,396,995 - 93,493,772 (-)EnsemblGRCm39 Ensembl
GRCm381593,499,111 - 93,596,266 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1593,499,114 - 93,595,891 (-)EnsemblGRCm38mm10GRCm38
MGSCv371593,329,545 - 93,426,322 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361593,327,294 - 93,424,071 (-)NCBIMGSCv36mm8
Celera1595,647,051 - 95,744,081 (-)NCBICelera
Cytogenetic Map15E3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dinitrotoluene  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bromobenzene  (ISO)
butan-1-ol  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt atom  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
cylindrospermopsin  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
flusilazole  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gentamycin  (ISO)
isobutanol  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
methyl methanesulfonate  (ISO)
Monobutylphthalate  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
propiconazole  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sotorasib  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
torcetrapib  (ISO)
trametinib  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ morphogenesis  (IMP)
anterior visceral endoderm cell migration  (IMP)
aorta development  (IMP)
apoptotic process  (IMP)
axonogenesis  (IMP)
basement membrane organization  (IMP)
bone mineralization  (IMP)
cardiac muscle cell development  (IMP)
cell migration  (IGI,IMP)
cell-cell adhesion  (IMP)
cellular component organization  (IMP)
cilium assembly  (IMP)
cilium organization  (IMP)
cornea development in camera-type eye  (IMP)
coronary vasculature development  (IMP)
cytoskeleton organization  (IMP)
cytoskeleton-dependent intracellular transport  (IMP)
dendrite development  (IMP)
embryonic brain development  (IMP)
embryonic digit morphogenesis  (IMP)
embryonic limb morphogenesis  (IMP)
embryonic nail plate morphogenesis  (IMP)
epidermal growth factor receptor signaling pathway  (IMP)
establishment of bipolar cell polarity involved in cell morphogenesis  (IMP)
establishment of cell polarity  (IGI,IMP)
establishment of protein localization  (IMP)
establishment or maintenance of cell polarity  (IMP)
extracellular matrix assembly  (IMP)
eyelid development in camera-type eye  (IMP)
face morphogenesis  (IMP)
focal adhesion disassembly  (IMP)
gene expression  (IMP)
heart development  (IMP)
limb development  (IMP)
limb morphogenesis  (IMP)
mesenchyme development  (IMP)
mitotic spindle assembly  (IMP)
multicellular organism growth  (IMP)
negative regulation of canonical Wnt signaling pathway  (ISO)
negative regulation of cardiac muscle cell myoblast differentiation  (ISO)
negative regulation of DNA-templated transcription  (ISO)
neural tube closure  (IMP,ISO)
neuron projection development  (IMP)
neuron projection extension  (IMP)
neuron projection morphogenesis  (IMP)
outflow tract morphogenesis  (IMP)
planar cell polarity pathway involved in axis elongation  (IMP)
polarized secretion of basement membrane proteins in epithelium  (IMP)
positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (ISO)
positive regulation of protein ubiquitination  (ISO)
post-anal tail morphogenesis  (IMP)
primitive streak formation  (IMP)
programmed cell death  (IMP)
protein import into nucleus  (ISO)
renal tubule development  (IMP)
response to electrical stimulus  (IMP)
response to xenobiotic stimulus  (IMP)
tear secretion  (IMP)
tissue development  (IMP)
tissue homeostasis  (IMP)
vesicle-mediated transport  (IMP)
Wnt signaling pathway  (IMP)
Wnt signaling pathway, planar cell polarity pathway  (IMP)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal anterior visceral endoderm cell migration  (IAGP)
abnormal chondrocyte morphology  (IAGP)
abnormal cochlear hair cell stereociliary bundle morphology  (IAGP)
abnormal developmental patterning  (IAGP)
abnormal digit morphology  (IAGP)
abnormal embryonic epiblast morphology  (IAGP)
abnormal excitatory synapse morphology  (IAGP)
abnormal extraembryonic endoderm formation  (IAGP)
abnormal eyelid cilium morphology  (IAGP)
abnormal eyelid morphology  (IAGP)
abnormal fetal cardiomyocyte morphology  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal hair follicle development  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair follicle orientation  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal innervation  (IAGP)
abnormal kidney collecting duct morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal mitotic spindle morphology  (IAGP)
abnormal myocardial fiber morphology  (IAGP)
abnormal nervous system tract morphology  (IAGP)
abnormal nose morphology  (IAGP)
abnormal object recognition memory  (IAGP)
abnormal palatal mesenchymal cell proliferation  (IAGP)
abnormal palatal rugae morphology  (IAGP)
abnormal palatal shelf morphology  (IAGP)
abnormal phalanx morphology  (IAGP)
abnormal proximal convoluted tubule morphology  (IAGP)
abnormal renal tubule morphology  (IAGP)
abnormal secondary palate development  (IAGP)
abnormal seizure response to electrical stimulation  (IAGP)
abnormal social investigation  (IAGP)
abnormal spatial reference memory  (IAGP)
abnormal striatum morphology  (IAGP)
abnormal ureteric bud morphology  (IAGP)
abnormal vertebrae development  (IAGP)
absent mesoderm  (IAGP)
atrial septal defect  (IAGP)
bifid tongue  (IAGP)
brachydactyly  (IAGP)
cleft palate  (IAGP)
cleft secondary palate  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased length of long bones  (IAGP)
decreased maxillary shelf size  (IAGP)
decreased mitotic index  (IAGP)
decreased palatal shelf size  (IAGP)
delayed endochondral bone ossification  (IAGP)
delayed neural tube closure  (IAGP)
dilated renal tubule  (IAGP)
double outlet right ventricle, ventricular defect committed to aorta  (IEA)
embryonic growth arrest  (IAGP)
embryonic lethality between somite formation and embryo turning, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
enlarged heart right atrium  (IAGP)
enlarged lateral ventricles  (IAGP)
eyelids open at birth  (IAGP)
failure of palatal shelf elevation  (IAGP)
failure of primitive streak formation  (IAGP)
flattened snout  (IAGP)
fused lower incisors  (IAGP)
increased diameter of long bones  (IAGP)
increased embryonic tissue cell apoptosis  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IAGP)
kidney cyst  (IAGP)
kinked tail  (IAGP)
microcephaly  (IEA)
micrognathia  (IEA)
misaligned sternebrae  (IAGP)
ocular hypertelorism  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
perimembraneous ventricular septal defect  (IEA)
postnatal lethality, complete penetrance  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prominent forehead  (IAGP)
short cochlear hair cell stereocilia  (IAGP)
short limbs  (IAGP)
short mandible  (IAGP)
short nasal bone  (IAGP)
short premaxilla  (IAGP)
short snout  (IAGP)
short tail  (IAGP)
short tongue  (IAGP)
transposition of great arteries  (IAGP)
wavy tail  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Planar cell polarity signaling in vertebrates. Jones C and Chen P, Bioessays. 2007 Feb;29(2):120-32.
2. Neuron-restrictive silencer factor-mediated hyperpolarization-activated cyclic nucleotide gated channelopathy in experimental temporal lobe epilepsy. McClelland S, etal., Ann Neurol. 2011 Sep;70(3):454-64. doi: 10.1002/ana.22479.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14516664   PMID:15489334   PMID:15618518   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16487141   PMID:17119020   PMID:17376975   PMID:17868671   PMID:17937400   PMID:18287559   PMID:18701545   PMID:18976727   PMID:19379695   PMID:19706528   PMID:19788910  
PMID:20534871   PMID:20630950   PMID:21199191   PMID:21246654   PMID:21267068   PMID:21276947   PMID:21316586   PMID:21677750   PMID:22218901   PMID:22228100   PMID:22333836   PMID:22771245  
PMID:23122850   PMID:23177622   PMID:23420014   PMID:23487311   PMID:23913870   PMID:24161848   PMID:24312498   PMID:24689077   PMID:24927917   PMID:25145929   PMID:25190059   PMID:25807483  
PMID:26883626   PMID:27378169   PMID:27582005   PMID:28009287   PMID:28292423   PMID:28837644   PMID:28935237   PMID:29450535   PMID:29636380   PMID:30022023   PMID:30575813   PMID:30590023  
PMID:31597102   PMID:32325033   PMID:33141892   PMID:33144400   PMID:34011608   PMID:34434215   PMID:34597683   PMID:35420656   PMID:35440748   PMID:36176272  


Genomics

Comparative Map Data
Prickle1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391593,396,992 - 93,494,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1593,396,995 - 93,493,772 (-)EnsemblGRCm39 Ensembl
GRCm381593,499,111 - 93,596,266 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1593,499,114 - 93,595,891 (-)EnsemblGRCm38mm10GRCm38
MGSCv371593,329,545 - 93,426,322 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361593,327,294 - 93,424,071 (-)NCBIMGSCv36mm8
Celera1595,647,051 - 95,744,081 (-)NCBICelera
Cytogenetic Map15E3NCBI
PRICKLE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381242,456,757 - 42,589,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1242,456,757 - 42,590,355 (-)EnsemblGRCh38hg38GRCh38
GRCh371242,850,559 - 42,983,548 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361241,139,341 - 41,269,745 (-)NCBINCBI36Build 36hg18NCBI36
Build 341241,139,340 - 41,269,745NCBI
Celera1241,653,996 - 41,785,497 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1239,878,936 - 40,010,599 (-)NCBIHuRef
CHM1_11242,818,791 - 42,950,331 (-)NCBICHM1_1
T2T-CHM13v2.01242,414,615 - 42,547,546 (-)NCBIT2T-CHM13v2.0
Prickle1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27124,639,142 - 124,735,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7124,639,142 - 124,658,113 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7126,413,839 - 126,432,848 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.07128,639,712 - 128,658,721 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.07128,561,664 - 128,580,709 (-)NCBIRnor_WKY
Rnor_6.07134,702,964 - 134,799,437 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7134,702,964 - 134,722,215 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07134,370,195 - 134,466,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47131,967,220 - 131,986,187 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17132,044,813 - 132,052,370 (-)NCBI
Celera7121,036,572 - 121,055,537 (-)NCBICelera
Cytogenetic Map7q35NCBI
Prickle1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555001,897,912 - 1,990,875 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555001,897,899 - 1,990,791 (-)NCBIChiLan1.0ChiLan1.0
PRICKLE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11251,566,605 - 51,699,232 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01246,127,673 - 46,262,333 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11247,100,352 - 47,126,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1247,100,393 - 47,126,102 (+)Ensemblpanpan1.1panPan2
PRICKLE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12711,327,086 - 11,437,799 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2711,426,647 - 11,437,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2734,864,577 - 34,975,269 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02711,522,959 - 11,634,418 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2711,559,081 - 11,634,108 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12711,336,611 - 11,448,200 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02711,366,003 - 11,477,284 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02735,111,079 - 35,222,648 (-)NCBIUU_Cfam_GSD_1.0
Prickle1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494571,894,685 - 71,999,671 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365121,163,615 - 1,270,255 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365121,165,159 - 1,270,138 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRICKLE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl573,707,050 - 73,826,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1573,707,026 - 73,826,529 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2576,446,397 - 76,452,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRICKLE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11138,696,771 - 38,819,324 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1138,694,602 - 38,718,519 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037207,742,821 - 207,865,507 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prickle1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462481610,164,666 - 10,184,994 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462481610,087,866 - 10,185,004 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Prickle1
3156 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:875
Count of miRNA genes:350
Interacting mature miRNAs:407
Transcripts:ENSMUST00000048982, ENSMUST00000109255
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92788640103425899Mouse

Markers in Region
fa92f10.x1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381593,531,442 - 93,531,575UniSTSGRCm38
MGSCv371593,361,873 - 93,362,006UniSTSGRCm37
Celera1595,679,350 - 95,679,483UniSTS
Cytogenetic Map15E3UniSTS
26.MMHAP90FRA11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381593,513,035 - 93,513,193UniSTSGRCm38
MGSCv371593,343,466 - 93,343,624UniSTSGRCm37
Celera1595,660,828 - 95,660,986UniSTS
Cytogenetic Map15E3UniSTS
Whitehead_YAC15 UniSTS
UniSTS:237381  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381593,499,272 - 93,499,458UniSTSGRCm38
MGSCv371593,329,703 - 93,329,889UniSTSGRCm37
Celera1595,647,209 - 95,647,395UniSTS
Cytogenetic Map15E3UniSTS
AW215793  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381593,499,209 - 93,499,338UniSTSGRCm38
MGSCv371593,329,640 - 93,329,769UniSTSGRCm37
Celera1595,647,146 - 95,647,275UniSTS
Cytogenetic Map15E3UniSTS
Whitehead/MRC_RH15840.91UniSTS
PRICKLE1__5577  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381593,499,899 - 93,500,569UniSTSGRCm38
MGSCv371593,330,330 - 93,331,000UniSTSGRCm37
Celera1595,647,836 - 95,648,506UniSTS
Cytogenetic Map15E3UniSTS
Prickle1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381593,500,023 - 93,500,920UniSTSGRCm38
Celera1595,647,960 - 95,648,857UniSTS
Cytogenetic Map15E3UniSTS
cM Map1547.69UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC126556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000048982   ⟹   ENSMUSP00000049204
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1593,396,995 - 93,493,772 (-)Ensembl
GRCm38.p6 Ensembl1593,499,114 - 93,595,891 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109255   ⟹   ENSMUSP00000104878
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1593,396,995 - 93,417,404 (-)Ensembl
GRCm38.p6 Ensembl1593,499,114 - 93,519,523 (-)Ensembl
RefSeq Acc Id: NM_001033217   ⟹   NP_001028389
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391593,396,992 - 93,493,783 (-)NCBI
GRCm381593,499,111 - 93,595,902 (-)NCBI
MGSCv371593,329,545 - 93,426,322 (-)RGD
Celera1595,647,051 - 95,744,081 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001364846   ⟹   NP_001351775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391593,396,992 - 93,417,401 (-)NCBI
GRCm381593,499,111 - 93,519,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006520264   ⟹   XP_006520327
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391593,397,001 - 93,423,715 (-)NCBI
GRCm381593,499,111 - 93,524,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006520265   ⟹   XP_006520328
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391593,397,001 - 93,494,147 (-)NCBI
GRCm381593,499,111 - 93,596,266 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030248265   ⟹   XP_030104125
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391593,397,001 - 93,417,126 (-)NCBI
GRCm381593,499,111 - 93,519,250 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001028389   ⟸   NM_001033217
- UniProtKB: Q3U5C7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006520328   ⟸   XM_006520265
- Peptide Label: isoform X1
- UniProtKB: Q3U5C7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006520327   ⟸   XM_006520264
- Peptide Label: isoform X1
- UniProtKB: Q3U5C7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001351775   ⟸   NM_001364846
- UniProtKB: Q3U5C7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030104125   ⟸   XM_030248265
- Peptide Label: isoform X1
- UniProtKB: Q3U5C7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000049204   ⟸   ENSMUST00000048982
RefSeq Acc Id: ENSMUSP00000104878   ⟸   ENSMUST00000109255
Protein Domains
LIM zinc-binding   PET

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3U5C7-F1-model_v2 AlphaFold Q3U5C7 1-832 view protein structure

Promoters
RGD ID:6847242
Promoter ID:MM_ACW:19130
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:PRICKLE1.ESEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361593,333,694 - 93,334,194 (-)MPROMDB
RGD ID:6826368
Promoter ID:MM_KWN:19508
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC007XJC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361593,339,391 - 93,339,891 (-)MPROMDB
RGD ID:6826370
Promoter ID:MM_KWN:19509
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:ENSMUST00000109255,   UC007XJD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361593,349,524 - 93,350,024 (-)MPROMDB
RGD ID:6826369
Promoter ID:MM_KWN:19510
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   Brain,   Kidney,   Liver,   Lung
Transcripts:NM_001033217
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361593,426,004 - 93,426,504 (-)MPROMDB
RGD ID:8684812
Promoter ID:EPDNEW_M20436
Type:initiation region
Name:Prickle1_2
Description:Mus musculus prickle planar cell polarity protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20437  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381593,519,514 - 93,519,574EPDNEW
RGD ID:8684814
Promoter ID:EPDNEW_M20437
Type:multiple initiation site
Name:Prickle1_1
Description:Mus musculus prickle planar cell polarity protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20436  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381593,595,902 - 93,595,962EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916034 AgrOrtholog
Ensembl Genes ENSMUSG00000036158 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000049204 ENTREZGENE
  ENSMUSP00000049204.5 UniProtKB/Swiss-Prot
  ENSMUSP00000104878 ENTREZGENE
  ENSMUSP00000104878.3 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000048982 ENTREZGENE
  ENSMUST00000048982.11 UniProtKB/Swiss-Prot
  ENSMUST00000109255 ENTREZGENE
  ENSMUST00000109255.3 UniProtKB/Swiss-Prot
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro LIM2_prickle UniProtKB/Swiss-Prot
  LIM3_prickle UniProtKB/Swiss-Prot
  PET_domain UniProtKB/Swiss-Prot
  PET_prickle UniProtKB/Swiss-Prot
  Pk/Esn/Tes UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:106042 UniProtKB/Swiss-Prot
MGD MGI:1916034 ENTREZGENE
NCBI Gene 106042 ENTREZGENE
PANTHER LIM DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRICKLE-LIKE PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PET UniProtKB/Swiss-Prot
PhenoGen Prickle1 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PET UniProtKB/Swiss-Prot
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt PRIC1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8CGJ0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Prickle1  prickle planar cell polarity protein 1    prickle homolog 1  Symbol and/or name change 5135510 APPROVED
2016-02-02 Prickle1  prickle homolog 1    prickle homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED