Col1a2 (collagen, type I, alpha 2) - Rat Genome Database

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Gene: Col1a2 (collagen, type I, alpha 2) Mus musculus
Analyze
Symbol: Col1a2
Name: collagen, type I, alpha 2
RGD ID: 730985
MGI Page MGI
Description: Exhibits SMAD binding activity. Involved in several processes, including bone mineralization; extracellular matrix assembly; and protein heterotrimerization. Localizes to collagen type I trimer and extracellular space. Is expressed in several structures, including alimentary system; embryo mesenchyme; genitourinary system; heart and pericardium; and limb. Used to study osteogenesis imperfecta and osteogenesis imperfecta type 3. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome (multiple); heart valve disease; intracranial aneurysm; osteogenesis imperfecta (multiple); and osteoporosis. Orthologous to human COL1A2 (collagen type I alpha 2 chain).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: AA960264; AI325291; alpha-2 type I collagen; Co; Col; Col1; Col1a-2; Cola-2; Cola2; collagen alpha-2(I) chain; collagen COL1A2; oim; osteogenesis imperfecta; procollagen, type I, alpha 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,505,618 - 4,541,543 (+)NCBIGRCm39mm39
GRCm39 Ensembl64,504,814 - 4,541,544 (+)Ensembl
GRCm3864,505,618 - 4,541,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,504,814 - 4,541,544 (+)EnsemblGRCm38mm10GRCm38
MGSCv3764,455,697 - 4,491,543 (+)NCBIGRCm37mm9NCBIm37
MGSCv3664,455,761 - 4,490,730 (+)NCBImm8
Celera64,648,226 - 4,684,066 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-camphor  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
1-octadec-9-enoylglycero-3-phosphate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
1H-[1,2,4]oxadiazolo[4,3-a]quinoxalin-1-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2-butoxyethanol  (EXP)
2-nitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
4-tert-Octylphenol  (ISO)
5'-S-methyl-5'-thioadenosine  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
9-cis-retinoic acid  (ISO)
acetaldehyde  (EXP,ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
aldosterone  (ISO)
all-trans-retinoic acid  (EXP,ISO)
aluminium oxide  (ISO)
AM-251  (ISO)
amlodipine  (ISO)
amphetamine  (ISO)
amphibole asbestos  (EXP,ISO)
andrographolide  (EXP,ISO)
apocynin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
arsenous acid  (ISO)
baicalein  (ISO)
baicalin  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP,ISO)
boric acid  (EXP)
boron nitride  (ISO)
bosentan  (EXP)
bromochloroacetic acid  (ISO)
buspirone  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
camphor  (EXP)
candesartan  (EXP)
carbon nanotube  (EXP)
chenodeoxycholic acid  (EXP)
chlordecone  (EXP)
choline  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
curcumin  (EXP)
cyclosporin A  (EXP)
cytarabine  (ISO)
cytochalasin D  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibromoacetic acid  (ISO)
diethylstilbestrol  (EXP,ISO)
dioxygen  (EXP,ISO)
disulfiram  (ISO)
diuron  (ISO)
divanadium pentaoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
emodin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
flavonoids  (ISO)
flusilazole  (EXP)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
furan  (ISO)
gamma-aminobutyric acid  (ISO)
gamma-Oryzanol (TN)  (ISO)
genistein  (ISO)
glucose  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
hexaconazole  (EXP)
hydroxyurea  (EXP)
icariside II  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
L-methionine  (EXP)
lithium chloride  (EXP)
magnesium atom  (EXP,ISO)
malathion  (ISO)
malonaldehyde  (ISO)
maraviroc  (EXP)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mifepristone  (ISO)
N-acetyl-1,4-benzoquinone imine  (ISO)
N-acetyl-L-cysteine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nickel subsulfide  (ISO)
nicotinamide  (ISO)
nimesulide  (ISO)
nitric oxide  (ISO)
nitroprusside  (ISO)
okadaic acid  (EXP)
oxaliplatin  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
p-tert-Amylphenol  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentane-2,3-dione  (ISO)
perindopril  (ISO)
Phenelzine  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
phenytoin  (EXP,ISO)
PhIP  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
potassium dichromate  (EXP,ISO)
progesterone  (ISO)
quercetin  (ISO)
raloxifene  (EXP)
resveratrol  (EXP,ISO)
rotenone  (ISO)
S-adenosyl-L-homocysteine  (ISO)
S-adenosyl-L-methioninate  (EXP,ISO)
S-adenosyl-L-methionine  (EXP,ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
salvianolic acid B  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
serpentine asbestos  (EXP)
silicon dioxide  (EXP,ISO)
sirolimus  (ISO)
sodium arsenate  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium atom  (EXP)
sodium dichromate  (ISO)
sulindac  (EXP)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thalidomide  (ISO)
thioacetamide  (EXP,ISO)
titanium dioxide  (EXP)
toluene  (ISO)
topotecan  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP,ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
wortmannin  (ISO)
Y-27632  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Arosio B, etal., Pharmacol Toxicol. 1993 Dec;73(6):301-4.
2. Chipman SD, etal., Proc Natl Acad Sci U S A. 1993 Mar 1;90(5):1701-5.
3. Hirose T, etal., J Appl Physiol. 2008 Jan;104(1):170-7. Epub 2007 Oct 4.
4. Klein LE, etal., J Mol Cell Cardiol. 1996 Jan;28(1):33-42.
5. Lee KS, etal., Hum Mutat. 2006 Jun;27(6):599.
6. Ling XB, etal., J Am Soc Nephrol. 2010 Apr;21(4):646-53. doi: 10.1681/ASN.2009080876. Epub 2010 Feb 11.
7. Malfait F, etal., J Med Genet. 2006 Jul;43(7):e36.
8. MGD and Homologene mouse data transfer
9. MGD data from the GO Consortium
10. MGD IEA
11. OMIM Disease Annotation Pipeline
12. Pipeline to import KEGG annotations from KEGG into RGD
13. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. RGD automated import pipeline
15. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. RGD automated import pipeline for gene-chemical interactions
17. Schwarze U, etal., Am J Hum Genet. 2004 May;74(5):917-30. Epub 2004 Apr 9.
18. Superti-Furga A, etal., J Med Genet 1989 Jun;26(6):358-62.
19. Tahashi Y, etal., Hepatology. 2002 Jan;35(1):49-61.
20. Terashima H, etal., Am J Physiol Renal Physiol. 2010 Oct;299(4):F792-801. Epub 2010 Jul 21.
21. Yang Z, etal., Genet Mol Res. 2011 Feb 8;10(1):177-85. doi: 10.4238/vol10-1gmr984.
22. Yoneyama T, etal., Stroke. 2004 Feb;35(2):443-8. Epub 2004 Jan 22.
23. Zhang K, etal., Lab Invest. 1994 Feb;70(2):192-202.
Additional References at PubMed
PMID:1297453   PMID:1385049   PMID:1505972   PMID:1659665   PMID:1684952   PMID:1686014   PMID:1748823   PMID:1879336   PMID:2776477   PMID:2781418   PMID:2981217   PMID:3039494  
PMID:3456166   PMID:6203894   PMID:6857446   PMID:7598807   PMID:7629088   PMID:7767012   PMID:7825727   PMID:7832805   PMID:7873877   PMID:7905852   PMID:7906968   PMID:8020944  
PMID:8061924   PMID:8096378   PMID:8097422   PMID:8294106   PMID:8305476   PMID:8328969   PMID:8348960   PMID:8428926   PMID:8567960   PMID:8661009   PMID:8686743   PMID:8774909  
PMID:8785585   PMID:8794872   PMID:8824813   PMID:8862795   PMID:8889548   PMID:8900172   PMID:8968022   PMID:8984825   PMID:9030551   PMID:9084664   PMID:9202055   PMID:9213002  
PMID:9236128   PMID:9382709   PMID:9415455   PMID:9437052   PMID:9535558   PMID:9565071   PMID:9600738   PMID:9826522   PMID:9832566   PMID:9880236   PMID:9880238   PMID:9933481  
PMID:10072783   PMID:10349636   PMID:10580848   PMID:10608859   PMID:10633870   PMID:10684250   PMID:10878613   PMID:10913914   PMID:10922068   PMID:10932192   PMID:11029401   PMID:11042159  
PMID:11076861   PMID:11180952   PMID:11217851   PMID:11279244   PMID:11358497   PMID:11704498   PMID:11756428   PMID:11784073   PMID:11839810   PMID:11857453   PMID:11956140   PMID:12054477  
PMID:12109999   PMID:12192060   PMID:12206762   PMID:12466851   PMID:12477932   PMID:12524684   PMID:12592609   PMID:12840045   PMID:12874293   PMID:12875845   PMID:12904583   PMID:12952198  
PMID:14499643   PMID:14559231   PMID:14617570   PMID:14627958   PMID:14722113   PMID:14758483   PMID:14980515   PMID:15062855   PMID:15121863   PMID:15149860   PMID:15162503   PMID:15226419  
PMID:15247294   PMID:15456762   PMID:15489334   PMID:15516691   PMID:15548578   PMID:15609325   PMID:15689378   PMID:15866164   PMID:15866165   PMID:15872058   PMID:15878701   PMID:15983038  
PMID:16007336   PMID:16036621   PMID:16091368   PMID:16095890   PMID:16109715   PMID:16141072   PMID:16141073   PMID:16169709   PMID:16192629   PMID:16236725   PMID:16341224   PMID:16356873  
PMID:16368934   PMID:16537572   PMID:16537906   PMID:16602821   PMID:16611575   PMID:16702209   PMID:17014841   PMID:17029294   PMID:17135260   PMID:17141628   PMID:17194222   PMID:17204263  
PMID:17339267   PMID:17361118   PMID:17510210   PMID:17544391   PMID:17662583   PMID:17873295   PMID:17881772   PMID:17933712   PMID:17991736   PMID:18025304   PMID:18067859   PMID:18211825  
PMID:18234177   PMID:18266309   PMID:18287559   PMID:18313376   PMID:18313657   PMID:18395096   PMID:18424556   PMID:18554416   PMID:18559979   PMID:18639653   PMID:18684439   PMID:18721810  
PMID:18816857   PMID:19121369   PMID:19224984   PMID:19419310   PMID:19423573   PMID:19469869   PMID:19498055   PMID:19565505   PMID:19594296   PMID:19596008   PMID:19653325   PMID:19714363  
PMID:19853894   PMID:20025746   PMID:20053668   PMID:20080568   PMID:20147630   PMID:20193675   PMID:20348238   PMID:20417683   PMID:20430747   PMID:20440000   PMID:20463013   PMID:20498044  
PMID:20515681   PMID:20548288   PMID:20570757   PMID:20619344   PMID:20696843   PMID:20713358   PMID:20724489   PMID:20736092   PMID:20830701   PMID:20837772   PMID:20864640   PMID:20881139  
PMID:20944625   PMID:21067603   PMID:21088133   PMID:21185280   PMID:21193410   PMID:21246657   PMID:21267068   PMID:21289056   PMID:21571217   PMID:21606205   PMID:21643937   PMID:21677750  
PMID:21746880   PMID:21855382   PMID:21873635   PMID:21911092   PMID:21934140   PMID:22049076   PMID:22067913   PMID:22155508   PMID:22159717   PMID:22248532   PMID:22277670   PMID:22318228  
PMID:22325288   PMID:22449447   PMID:22454451   PMID:22546693   PMID:22560297   PMID:22589746   PMID:22682244   PMID:22843703   PMID:22866057   PMID:22910579   PMID:23034633   PMID:23213481  
PMID:23273220   PMID:23278967   PMID:23352925   PMID:23567158   PMID:23658023   PMID:23717575   PMID:23839921   PMID:23895934   PMID:23918805   PMID:23937658   PMID:23946446   PMID:24006456  
PMID:24046351   PMID:24131868   PMID:24194600   PMID:24284212   PMID:24373743   PMID:24373921   PMID:24385915   PMID:24419316   PMID:24563484   PMID:24782617   PMID:24793237   PMID:24930703  
PMID:25172663   PMID:25249460   PMID:25300579   PMID:25344368   PMID:25354942   PMID:25382630   PMID:25395457   PMID:25422423   PMID:25516967   PMID:25715398   PMID:25977369   PMID:26134413  
PMID:26258302   PMID:26283861   PMID:26707242   PMID:26711547   PMID:26883788   PMID:26899202   PMID:26925839   PMID:27019229   PMID:27039252   PMID:27083399   PMID:27180663   PMID:27212026  
PMID:27503806   PMID:27527664   PMID:27623927   PMID:27626380   PMID:27664939   PMID:27770432   PMID:27804995   PMID:27821779   PMID:28071719   PMID:28079129   PMID:28211947   PMID:28218908  
PMID:28424212   PMID:28438836   PMID:28461254   PMID:28527294   PMID:28535371   PMID:28600151   PMID:28628111   PMID:28684544   PMID:28698371   PMID:28771943   PMID:28790014   PMID:28809397  
PMID:29176738   PMID:29290586   PMID:29368411   PMID:29437042   PMID:29453333   PMID:29523871   PMID:29677202   PMID:29743679   PMID:29956664   PMID:30287488   PMID:30306735   PMID:30389913  
PMID:30459452   PMID:30478225   PMID:30566624   PMID:30579604   PMID:30936179   PMID:30947518   PMID:31100714   PMID:31199918   PMID:31319059   PMID:31581792   PMID:31624071   PMID:31634485  
PMID:31648079   PMID:31805389   PMID:31835801   PMID:31844321   PMID:32002646   PMID:32040930   PMID:32151560   PMID:32169905   PMID:32325033   PMID:32523052  


Genomics

Comparative Map Data
Col1a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,505,618 - 4,541,543 (+)NCBIGRCm39mm39
GRCm39 Ensembl64,504,814 - 4,541,544 (+)Ensembl
GRCm3864,505,618 - 4,541,543 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,504,814 - 4,541,544 (+)EnsemblGRCm38mm10GRCm38
MGSCv3764,455,697 - 4,491,543 (+)NCBIGRCm37mm9NCBIm37
MGSCv3664,455,761 - 4,490,730 (+)NCBImm8
Celera64,648,226 - 4,684,066 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
COL1A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl794,394,895 - 94,431,227 (+)EnsemblGRCh38hg38GRCh38
GRCh38794,394,895 - 94,431,227 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37794,024,207 - 94,060,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36793,861,809 - 93,898,480 (+)NCBINCBI36hg18NCBI36
Build 34793,668,523 - 93,705,195NCBI
Celera788,722,142 - 88,758,790 (+)NCBI
Cytogenetic Map7q21.3NCBI
HuRef788,631,579 - 88,668,235 (+)NCBIHuRef
CHM1_1793,953,972 - 93,990,650 (+)NCBICHM1_1
CRA_TCAGchr7v2793,353,052 - 93,389,700 (+)NCBI
Col1a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2432,563,938 - 32,598,868 (+)NCBI
Rnor_6.0 Ensembl431,534,225 - 31,569,151 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0431,534,225 - 31,569,152 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0429,442,828 - 29,478,616 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0431,405,253 - 31,440,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4429,393,645 - 29,428,572 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1429,431,383 - 29,467,014 (+)NCBI
Celera427,947,892 - 27,982,658 (+)NCBICelera
Cytogenetic Map4q21NCBI
Col1a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543211,128,112 - 11,163,302 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543211,127,961 - 11,164,145 (+)NCBIChiLan1.0ChiLan1.0
COL1A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1799,935,185 - 99,971,810 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl799,935,185 - 99,971,803 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0786,344,657 - 86,381,282 (+)NCBIMhudiblu_PPA_v0panPan3
COL1A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11419,883,731 - 19,919,527 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1419,883,868 - 19,919,527 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,443,112 - 19,478,898 (+)NCBI
ROS_Cfam_1.01419,699,099 - 19,734,901 (+)NCBI
UMICH_Zoey_3.11419,850,793 - 19,886,662 (+)NCBI
UNSW_CanFamBas_1.01419,585,955 - 19,621,759 (+)NCBI
UU_Cfam_GSD_1.01419,843,097 - 19,878,889 (+)NCBI
Col1a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511833,176,893 - 33,212,967 (+)NCBI
SpeTri2.0NW_0049365855,650,322 - 5,686,393 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL1A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl974,173,931 - 74,210,398 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1974,174,484 - 74,210,407 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2981,357,192 - 81,393,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL1A2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12154,602,780 - 54,639,832 (-)NCBI
ChlSab1.1 Ensembl2154,602,398 - 54,632,780 (-)Ensembl
Vero_WHO_p1.0NW_02366604249,682,896 - 49,719,954 (+)NCBI
Col1a2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248131,174,071 - 1,209,929 (+)NCBI

Position Markers
AA960264  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,539,569 - 4,539,701UniSTSGRCm38
MGSCv3764,489,569 - 4,489,701UniSTSGRCm37
Celera64,682,092 - 4,682,224UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
Whitehead/MRC_RH629.04UniSTS
Whitehead/MRC_RH626.51UniSTS
D6Mit138  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,503,823 - 4,503,937UniSTSGRCm38
MGSCv3764,453,823 - 4,453,937UniSTSGRCm37
Celera64,645,637 - 4,645,751UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
Whitehead Genetic62.2UniSTS
GDB:180350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,531,917 - 4,532,765UniSTSGRCm38
MGSCv3764,481,917 - 4,482,765UniSTSGRCm37
Celera64,674,440 - 4,675,288UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
Col1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,538,733 - 4,539,489UniSTSGRCm38
MGSCv3764,488,733 - 4,489,489UniSTSGRCm37
Celera64,681,256 - 4,682,012UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
cM Map60.68UniSTS
D7S2150E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,534,654 - 4,535,483UniSTSGRCm38
MGSCv3764,484,654 - 4,485,483UniSTSGRCm37
Celera64,677,177 - 4,678,006UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS
GDB:177260  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381597,976,784 - 97,977,364UniSTSGRCm38
GRCm3864,538,631 - 4,539,563UniSTSGRCm38
MGSCv371597,807,215 - 97,807,795UniSTSGRCm37
MGSCv3764,488,631 - 4,489,563UniSTSGRCm37
Celera64,681,154 - 4,682,086UniSTS
Celera15100,101,647 - 100,102,227UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map15F1UniSTS
cM Map60.68UniSTS
cM Map1554.5UniSTS
Col1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6A1UniSTS
Col1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,539,537 - 4,540,539UniSTSGRCm38
MGSCv3764,489,537 - 4,490,539UniSTSGRCm37
Celera64,682,060 - 4,683,062UniSTS
Cytogenetic Map6A1UniSTS
Col1a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3864,505,740 - 4,505,906UniSTSGRCm38
MGSCv3764,455,740 - 4,455,906UniSTSGRCm37
Celera64,648,269 - 4,648,435UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.68UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144496Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144496Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144496Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633535476335Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
14700782Syncq6_msynovial calcification QTL 6 (mouse)641770005219000Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920738249326Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751334Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345314181Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348726677Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348726677Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348726677Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mirlet7gmmu-let-7g-5pOncomiRDBexternal_infoNANA20338660

Predicted Target Of
Summary Value
Count of predictions:958
Count of miRNA genes:558
Interacting mature miRNAs:694
Transcripts:ENSMUST00000031668, ENSMUST00000124686, ENSMUST00000132029, ENSMUST00000138511, ENSMUST00000139201, ENSMUST00000141483, ENSMUST00000148864, ENSMUST00000155687
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC026891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF345994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF543573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY138414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K01832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X58251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031668   ⟹   ENSMUSP00000031668
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl64,505,493 - 4,541,544 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124686
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl64,535,781 - 4,536,623 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132029
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl64,505,702 - 4,515,019 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138511
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl64,505,702 - 4,514,529 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141483   ⟹   ENSMUSP00000125275
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl64,504,814 - 4,516,419 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148864
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl64,520,624 - 4,529,452 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155687
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl64,530,156 - 4,535,885 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203346
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl64,537,489 - 4,537,990 (+)Ensembl
RefSeq Acc Id: NM_007743   ⟹   NP_031769
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,505,618 - 4,541,543 (+)NCBI
GRCm3864,505,618 - 4,541,543 (+)NCBI
MGSCv3764,455,697 - 4,491,543 (+)RGD
Celera64,648,226 - 4,684,066 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031769   ⟸   NM_007743
- Peptide Label: preproprotein
- UniProtKB: Q01149 (UniProtKB/Swiss-Prot),   Q3TX57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000031668   ⟸   ENSMUST00000031668
RefSeq Acc Id: ENSMUSP00000125275   ⟸   ENSMUST00000141483
Protein Domains
Fibrillar collagen NC1

Promoters
RGD ID:6839114
Promoter ID:MM_KWN:45082
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:OTTMUST00000050505
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,454,571 - 4,455,071 (+)MPROMDB
RGD ID:6839112
Promoter ID:MM_KWN:45083
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050501,   OTTMUST00000050503,   UC009AVL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,455,536 - 4,456,036 (+)MPROMDB
RGD ID:6849510
Promoter ID:EP24026
Type:single initiation site
Name:MM_CA21
Description:alpha 2 type I collagen, COL1A2 or COLA2 gene.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 125; Mammalian, avian alpha-2 type I collagen
Experiment Methods:Nuclease protection; Nuclease protection; transfected or transformed cells
Regulation:fibroblasts, osteoblasts; (induced by or strongly expressed in) TGF (repressed by or weakly expressed in) b'
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3764,455,702 - 4,455,762EPD
MGSCv3664,455,702 - 4,455,762EPD
RGD ID:6839113
Promoter ID:MM_KWN:45084
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050504
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,469,626 - 4,470,757 (+)MPROMDB
RGD ID:6839116
Promoter ID:MM_KWN:45085
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050506
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,479,206 - 4,480,577 (+)MPROMDB
RGD ID:6847987
Promoter ID:MM_ACW:40407
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4
Transcripts:COL1A2.GSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,483,416 - 4,483,916 (+)MPROMDB
RGD ID:6839117
Promoter ID:MM_KWN:45086
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050507,   OTTMUST00000050508
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,484,096 - 4,485,587 (+)MPROMDB
RGD ID:6847985
Promoter ID:MM_ACW:40408
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:COL1A2.ESEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,486,686 - 4,488,067 (+)MPROMDB
RGD ID:6847986
Promoter ID:MM_ACW:40409
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:COL1A2.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,488,771 - 4,490,627 (+)MPROMDB
RGD ID:6888932
Promoter ID:EPDNEW_M7917
Type:multiple initiation site
Name:Col1a2_1
Description:Mus musculus collagen, type I, alpha 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3864,505,702 - 4,505,762EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88468 AgrOrtholog
Ensembl Genes ENSMUSG00000029661 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031668 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000125275 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031668 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000141483 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fib_collagen_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12843 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88468 ENTREZGENE
NCBI Gene 12843 ENTREZGENE
Pfam COLFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB COL1A2 RGD
PhenoGen Col1a2 PhenoGen
PROSITE NC1_FIB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART COLFI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CO1A2_MOUSE UniProtKB/Swiss-Prot
  E0CXI2_MOUSE UniProtKB/TrEMBL
  Q01149 ENTREZGENE
  Q3TP88_MOUSE UniProtKB/TrEMBL
  Q3TU64_MOUSE UniProtKB/TrEMBL
  Q3TUE2_MOUSE UniProtKB/TrEMBL
  Q3TX57 ENTREZGENE, UniProtKB/TrEMBL
  Q91VL4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8CGA5 UniProtKB/Swiss-Prot