Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Col6a6 (collagen, type VI, alpha 6) Mus musculus
Analyze
Symbol: Col6a6
Name: collagen, type VI, alpha 6
Description: Predicted to have extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in cell adhesion. Localizes to the extracellular region. Is expressed in several structures, including genitourinary system; intraembryonic coelom; liver; lung; and musculoskeletal system. Orthologous to human COL6A6 (collagen type VI alpha 6 chain); PARTICIPATES IN cell-extracellular matrix signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: collagen alpha-6(VI) chain; E330019B14; E330026B02Rik
Orthologs:
Homo sapiens (human) : COL6A6 (collagen type VI alpha 6 chain)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Col6a6 (collagen type VI alpha 6 chain)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col6a6 (collagen type VI alpha 6 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL6A6 (collagen type VI alpha 6 chain)
Canis lupus familiaris (dog) : COL6A6 (collagen type VI alpha 6 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col6a6 (collagen type VI alpha 6 chain)
Sus scrofa (pig) : COL6A6 (collagen type VI alpha 6 chain)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm389105,689,417 - 105,828,246 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv379105,591,747 - 105,730,415 (-)NCBIGRCm37mm9NCBIm37
MGSCv369105,632,212 - 105,667,748 (-)NCBImm8
Celera9105,286,549 - 105,432,429 (-)NCBICelera
Cytogenetic Map9 F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (GRCm38)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Promoters

Additional Information

External Database Links
 
More on Col6a6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: mm9 mm10
MGI Report
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1319364
Created: 2005-01-12
Species: Mus musculus
Last Modified: 2019-09-12
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.