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ONTOLOGY REPORT - ANNOTATIONS

Term:basement membrane organization
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Accession:GO:0071711 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the basement membrane.
Comment:Note that this term has no relationship to 'membrane organization ; GO:0061024' because the basement membrane is not a lipid bilayer.
Synonyms:exact_synonym: basement membrane organisation


show annotations for term's descendants           Sort by:
basement membrane organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav1 caveolin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2180364 (PMID:11884617)
GO_REF:0000107 		RGD
Ensembl		 PMID:11884617 GO_REF:0000107 NCBI chr 4:46,606,538...46,639,616
Ensembl chr 4:45,634,918...45,673,705 		JBrowse link
G Cav2 caveolin 2 acts_upstream_of_or_within ISO
IEA 		MGI:2180372 (PMID:11884617)
GO_REF:0000107 		RGD
Ensembl		 PMID:11884617 GO_REF:0000107 NCBI chr 4:45,616,766...45,624,144
Ensembl chr 4:45,616,712...45,624,244 		JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO UniProtKB:Q86SQ0|UniProtKB:Q86UU1 (PMID:23940118) RGD PMID:23940118 NCBI chr13:32,046,362...32,267,954
Ensembl chr13:29,493,596...29,715,146 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:122,555,532...122,736,934
Ensembl chr 8:113,677,284...113,858,731 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:22235340) RGD PMID:22235340 NCBI chr 9:54,866,646...54,902,578
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain involved_in ISO
IEA 		(PMID:18160688), (PMID:19949034), (PMID:23065703)
GO_REF:0000107 		RGD
Ensembl		 PMID:18160688 PMID:19949034 PMID:23065703 GO_REF:0000107 NCBI chr16:84,885,597...84,996,482
Ensembl chr16:78,183,533...78,294,412 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:2153356 (PMID:25158062)
GO_REF:0000107 		RGD
Ensembl		 PMID:25158062 GO_REF:0000107 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597 		JBrowse link
G Dag1 dystroglycan 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1934902 (PMID:23217742)
GO_REF:0000107
(PMID:23940118) 		RGD
Ensembl		 PMID:23217742 PMID:23940118 GO_REF:0000107 NCBI chr 8:117,769,517...117,834,347
Ensembl chr 8:108,890,929...108,952,325 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:26024086)
GO_REF:0000107 		RGD
Ensembl		 PMID:26024086 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fermt1 FERM domain containing kindlin 1 involved_in ISO
IEA 		(PMID:24681597)
GO_REF:0000107 		RGD
Ensembl		 PMID:24681597 GO_REF:0000107 NCBI chr 3:140,624,434...140,666,419
Ensembl chr 3:120,171,561...120,213,555 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4835411 (PMID:28039900) RGD PMID:28039900 NCBI chr 1:86,607,769...86,615,045
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Fktn fukutin acts_upstream_of_or_within ISO (PMID:29360985) RGD PMID:29360985 NCBI chr 5:73,134,746...73,191,772
Ensembl chr 5:68,340,028...68,396,409 		JBrowse link
G Flrt2 fibronectin leucine rich transmembrane protein 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:21350012) 		UniProt
RGD		 PMID:21350012 GO_REF:0000024 NCBI chr 6:114,777,547...114,872,688
Ensembl chr 6:114,777,599...114,872,785 		JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO
IEA 		MGI:2384087 (PMID:9811848)
GO_REF:0000107 		RGD
Ensembl		 PMID:9811848 GO_REF:0000107 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785 		JBrowse link
G Gas2 growth arrest-specific 2 acts_upstream_of_or_within ISO MGI:6187669 (PMID:27734842) RGD PMID:27734842 NCBI chr 1:101,452,361...101,582,619
Ensembl chr 1:101,482,591...101,582,619 		JBrowse link
G Hmcn1 hemicentin 1 involved_in ISO
IEA 		(PMID:34504132)
GO_REF:0000107 		RGD
Ensembl		 PMID:34504132 GO_REF:0000107 NCBI chr13:62,615,461...63,084,524
Ensembl chr13:62,615,461...63,084,524 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISO (PMID:24681597) RGD PMID:24681597 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856965 (PMID:12140558), (PMID:21970971)
GO_REF:0000107 		RGD
Ensembl		 PMID:12140558 PMID:21970971 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Mmp11 matrix metallopeptidase 11 acts_upstream_of_or_within ISO
IEA 		MGI:2387934 (PMID:18622425)
GO_REF:0000107 		RGD
Ensembl		 PMID:18622425 GO_REF:0000107 NCBI chr20:12,730,284...12,739,067
Ensembl chr20:12,730,836...12,739,628 		JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 involved_in ISO UniProtKB:Q7Z460|UniProtKB:Q86SQ0 (PMID:23940118) RGD PMID:23940118 NCBI chr 8:45,003,543...45,051,541
Ensembl chr 8:45,003,538...45,051,522 		JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q7Z460|UniProtKB:Q86UU1 (PMID:23940118) 		Ensembl
RGD		 PMID:23940118 GO_REF:0000107 NCBI chr11:54,859,173...55,078,212
Ensembl chr11:54,859,135...55,078,467 		JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO MGI:3614822 (PMID:16436605) RGD PMID:16436605 NCBI chr10:48,294,932...48,324,941
Ensembl chr10:47,795,709...47,825,714 		JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) acts_upstream_of_or_within ISO
IEA 		MGI:3623521 (PMID:21970971)
GO_REF:0000107 		RGD
Ensembl		 PMID:21970971 GO_REF:0000107 NCBI chr 5:134,870,971...134,880,864
Ensembl chr 5:129,634,294...129,644,149 		JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 acts_upstream_of_or_within ISO
IEA 		MGI:5302103 (PMID:21970971)
GO_REF:0000107 		RGD
Ensembl		 PMID:21970971 GO_REF:0000107 NCBI chr 6:112,486,416...112,525,799
Ensembl chr 6:106,755,462...106,794,849 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:5645931 (PMID:33144400) 		Ensembl
RGD		 PMID:33144400 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Pxdn peroxidasin involved_in ISO
IEA 		(PMID:24895407), (PMID:28424209)
GO_REF:0000107 		RGD
Ensembl		 PMID:24895407 PMID:28424209 GO_REF:0000107 NCBI chr 6:52,308,347...52,385,943
Ensembl chr 6:46,580,761...46,658,345 		JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A acts_upstream_of_or_within ISO MGI:3608888 (PMID:21069829) RGD PMID:21069829 NCBI chr 1:195,935,162...195,941,469
Ensembl chr 1:195,935,349...195,941,467 		JBrowse link
G Spint2 serine peptidase inhibitor, Kunitz type, 2 acts_upstream_of_or_within ISO MGI:2156187 (PMID:19592578) RGD PMID:19592578 NCBI chr 1:84,558,159...84,580,616
Ensembl chr 1:84,558,166...84,580,616 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2183192 (PMID:16186342) RGD PMID:16186342 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
basement membrane assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585 		JBrowse link
G Lamb2 laminin subunit beta 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:118,056,899...118,069,090
Ensembl chr 8:109,178,409...109,190,549 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:104,833,810...104,875,405
Ensembl chr13:104,833,873...104,875,405 		JBrowse link
G Megf9 multiple EGF-like-domains 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:83,993,565...84,105,622
Ensembl chr 5:83,993,565...84,105,622 		JBrowse link
G Ntn4 netrin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:28,186,611...28,300,390
Ensembl chr 7:28,186,611...28,300,390 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO
IEA 		MGI:3620600|MGI:3620601|MGI:3620603 (PMID:16467571)
GO_REF:0000107 		RGD
Ensembl		 PMID:16467571 GO_REF:0000107 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
G Pxdn peroxidasin involved_in
acts_upstream_of 		ISO
IEA 		(PMID:25708780), (PMID:27697841), (PMID:32571911)
GO_REF:0000107
(PMID:22842973), (PMID:25708780), (PMID:32571911)
(PMID:32543734) 		RGD
Ensembl		 PMID:22842973 PMID:25708780 PMID:27697841 PMID:32543734 PMID:32571911 GO_REF:0000107 NCBI chr 6:52,308,347...52,385,943
Ensembl chr 6:46,580,761...46,658,345 		JBrowse link
G Ramp2 receptor activity modifying protein 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:18097473) 		UniProt
RGD		 PMID:18097473 GO_REF:0000024 NCBI chr10:86,689,148...86,690,956
Ensembl chr10:86,188,812...86,231,829 		JBrowse link
basement membrane disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cma1 chymase 1 involved_in ISO
IEA 		(PMID:27068509)
GO_REF:0000107 		RGD
Ensembl		 PMID:27068509 GO_REF:0000107 NCBI chr15:33,387,351...33,390,133
Ensembl chr15:29,417,451...29,420,233 		JBrowse link
G Ctss cathepsin S involved_in ISO (PMID:22952693) RGD PMID:22952693 NCBI chr 2:185,775,316...185,803,440
Ensembl chr 2:183,086,437...183,114,483 		JBrowse link
G Hpn hepsin involved_in ISO
IEA
ISS 		(PMID:16908524)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:16908524 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:86,337,085...86,352,785
Ensembl chr 1:86,337,087...86,352,811 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular component organization or biogenesis 7114
        cellular component organization 6827
          external encapsulating structure organization 325
            extracellular matrix organization 324
              basement membrane organization 39
                basement membrane assembly + 8
                basement membrane disassembly + 3
                regulation of basement membrane organization + 0
paths to the root