Cflar (CASP8 and FADD-like apoptosis regulator) - Rat Genome Database

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Gene: Cflar (CASP8 and FADD-like apoptosis regulator) Mus musculus
Analyze
Symbol: Cflar
Name: CASP8 and FADD-like apoptosis regulator
RGD ID: 731977
MGI Page MGI
Description: Enables peptidase activator activity. Involved in several processes, including negative regulation of myoblast fusion; positive regulation of NF-kappaB transcription factor activity; and skeletal muscle atrophy. Acts upstream of or within negative regulation of programmed cell death and response to bacterium. Located in cytoplasm. Is expressed in several structures, including central nervous system; gut; heart; peripheral nervous system ganglion; and retina. Orthologous to human CFLAR (CASP8 and FADD like apoptosis regulator); PARTICIPATES IN FasL mediated signaling pathway; Trail mediated signaling pathway; apoptotic cell death pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2310024N18Rik; A430105C05Rik; AI646576; AU021929; c-F; c-Flip; Ca; Cash; caspase homolog; caspase-eight-related protein; caspase-like apoptosis regulatory protein; Casper; cellular FLICE-like inhibitory protein; CLARP; ENSMUSG00000050533; ENSMUSG00000072980; expressed sequence AU021929; F; FADD-like antiapoptotic molecule 1; FLAME; FLAME-1; Flip; Gm9845; I-FLICE; inhibitor of FLICE; MACH-related inducer of toxicity; MGC103395; MRIT; usurpin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm9845  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,750,353 - 58,798,043 (+)NCBIGRCm39mm39
GRCm39 Ensembl158,750,667 - 58,798,043 (+)Ensembl
GRCm38158,711,311 - 58,758,884 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,711,508 - 58,758,884 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,770,130 - 58,815,728 (+)NCBIGRCm37mm9NCBIm37
MGSCv36158,657,840 - 58,699,711 (+)NCBImm8
Celera159,232,248 - 59,277,933 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1'-acetoxychavicol acetate  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
15-deoxy-Delta(12,14)-prostaglandin J2  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-amino-2-deoxy-D-galactopyranose  (EXP)
2-Hydroxy-6-(8,11,14-pentadecatrienyl)benzoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(4-chloro-2-methylphenoxy)-N-hydroxybutanamide  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
[6]-Shogaol  (ISO)
acetylsalicylic acid  (EXP,ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
adenosine  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alvocidib  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsenous acid  (ISO)
baicalein  (EXP)
beauvericin  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-carotene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
cafestol  (ISO)
camptothecin  (EXP)
cannabidiol  (EXP,ISO)
capsaicin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
celecoxib  (ISO)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
curcumin  (ISO)
cycloheximide  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (EXP)
diclofenac  (ISO)
diethyl maleate  (ISO)
dimethyl sulfoxide  (ISO)
diosgenin  (ISO)
dioxygen  (ISO)
dipyridamole  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
epoxomicin  (ISO)
etacrynic acid  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
Evodiamine  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
genistein  (ISO)
gingerol  (ISO)
glycochenodeoxycholic acid  (EXP,ISO)
glyphosate  (ISO)
guggulsterone  (ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
hydroxychloroquine  (ISO)
hyperforin  (ISO)
ibrutinib  (ISO)
idelalisib  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
jaceosidin  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (EXP)
lonafarnib  (ISO)
LY294002  (ISO)
lysophosphatidylethanolamine  (EXP,ISO)
magnesium oxide  (ISO)
manganese(II) chloride  (ISO)
medroxyprogesterone acetate  (ISO)
methotrexate  (ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
mifepristone  (ISO)
Mitotane  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
p-menthan-3-ol  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pemetrexed  (ISO)
pentanal  (ISO)
Pentoxifylline  (ISO)
perfluorooctanoic acid  (ISO)
pevonedistat  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
rebaudioside A  (ISO)
resveratrol  (EXP,ISO)
rifampicin  (ISO)
romidepsin  (ISO)
rubimaillin  (ISO)
sarin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
simvastatin  (EXP,ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sorafenib  (ISO)
steviol  (ISO)
stevioside  (ISO)
succimer  (EXP,ISO)
sulindac sulfide  (ISO)
tamoxifen  (ISO)
Tanshinone I  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimethyltin  (EXP)
triptonide  (EXP)
troglitazone  (EXP,ISO)
tunicamycin  (EXP)
Tylophorine  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zerumbone  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of cysteine-type endopeptidase activity involved in apoptotic process  (IBA)
apoptotic process  (IBA,ISO)
apoptotic signaling pathway  (IBA)
cellular response to dexamethasone stimulus  (ISO)
cellular response to epidermal growth factor stimulus  (ISO)
cellular response to estradiol stimulus  (ISO)
cellular response to hypoxia  (ISO)
cellular response to insulin stimulus  (ISO)
cellular response to nitric oxide  (ISO)
negative regulation of apoptotic process  (IMP,ISO)
negative regulation of cardiac muscle cell apoptotic process  (ISO)
negative regulation of cellular response to transforming growth factor beta stimulus  (ISO)
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  (IMP)
negative regulation of epithelial cell apoptotic process  (ISO)
negative regulation of extrinsic apoptotic signaling pathway  (IGI,ISO)
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors  (IBA,ISO)
negative regulation of hepatocyte apoptotic process  (ISO)
negative regulation of myoblast fusion  (IMP)
negative regulation of necroptotic process  (IGI)
negative regulation of reactive oxygen species biosynthetic process  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of extracellular matrix organization  (ISO)
positive regulation of glomerular mesangial cell proliferation  (ISO)
positive regulation of hepatocyte proliferation  (ISO)
positive regulation of I-kappaB kinase/NF-kappaB signaling  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of NF-kappaB transcription factor activity  (IMP)
proteolysis  (IBA)
regulation of apoptotic process  (IEA)
regulation of necroptotic process  (ISO)
regulation of skeletal muscle satellite cell proliferation  (IMP)
response to bacterium  (IEP)
response to hypoxia  (ISO)
response to testosterone  (ISO)
skeletal muscle atrophy  (IMP)
skeletal muscle tissue development  (IMP)
skeletal muscle tissue regeneration  (IMP)
skeletal myofibril assembly  (IMP)
wound healing  (IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal abdominal lymph node morphology  (IAGP)
abnormal B cell number  (IAGP)
abnormal bone marrow cell number  (IAGP)
abnormal CD4-positive, alpha beta T cell number  (IAGP)
abnormal CD8-positive, alpha-beta T cell number  (IAGP)
abnormal definitive hematopoiesis  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal lymphocyte cell number  (IAGP)
abnormal myelopoiesis  (IAGP)
abnormal myocardial trabeculae morphology  (IAGP)
abnormal spleen B cell follicle morphology  (IAGP)
abnormal spleen marginal zone morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen red pulp morphology  (IAGP)
abnormal thymus corticomedullary boundary morphology  (IAGP)
abnormal thymus morphology  (IAGP)
anemia  (IAGP)
decreased body size  (IAGP)
decreased macrophage cell number  (IAGP)
decreased single-positive T cell number  (IAGP)
delayed heart development  (IAGP)
distended pericardium  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality prior to tooth bud stage  (IAGP)
enlarged spleen  (IAGP)
hemorrhage  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased eosinophil cell number  (IAGP)
increased fibroblast apoptosis  (IAGP)
increased granulocyte number  (IAGP)
increased leukocyte cell number  (IAGP)
increased monocyte cell number  (IAGP)
increased neutrophil cell number  (IAGP)
increased thymocyte apoptosis  (IAGP)
pericardial edema  (IAGP)
premature death  (IAGP)
preweaning lethality, complete penetrance  (IEA)
thin myocardium  (IAGP)
thrombocytosis  (IAGP)
References

Additional References at PubMed
PMID:8889548   PMID:9217161   PMID:9289491   PMID:9729047   PMID:10349636   PMID:10602037   PMID:10725249   PMID:10894163   PMID:10922068   PMID:11016460   PMID:11042159   PMID:11076861  
PMID:11217851   PMID:11247636   PMID:11544288   PMID:12244156   PMID:12466851   PMID:12477932   PMID:12477972   PMID:14551207   PMID:14610273   PMID:15282307   PMID:15557152   PMID:15761846  
PMID:15815586   PMID:15899875   PMID:15917295   PMID:15972663   PMID:16043517   PMID:16141072   PMID:16141073   PMID:16263940   PMID:16306425   PMID:16397188   PMID:16469705   PMID:16487007  
PMID:16602821   PMID:16783640   PMID:17056040   PMID:17110930   PMID:17237443   PMID:17372587   PMID:17448907   PMID:17462996   PMID:17464994   PMID:17488888   PMID:17581950   PMID:17699753  
PMID:17823262   PMID:17878261   PMID:17975479   PMID:18081036   PMID:18219316   PMID:18356280   PMID:18390734   PMID:18566605   PMID:18708583   PMID:18832693   PMID:19109151   PMID:19285665  
PMID:19300454   PMID:19322522   PMID:19373244   PMID:19429865   PMID:19433309   PMID:19587217   PMID:20100735   PMID:20335528   PMID:20427667   PMID:20724542   PMID:20739833   PMID:20980680  
PMID:21267068   PMID:21364645   PMID:21368763   PMID:21435442   PMID:21677750   PMID:21703207   PMID:21803845   PMID:21862448   PMID:21873635   PMID:22089168   PMID:22095280   PMID:22202974  
PMID:22393362   PMID:22406316   PMID:22675671   PMID:22700824   PMID:23012479   PMID:23144495   PMID:23175183   PMID:23250397   PMID:23313194   PMID:23424201   PMID:23505065   PMID:23828575  
PMID:24036366   PMID:24095739   PMID:24209745   PMID:24270411   PMID:24275659   PMID:24557836   PMID:24722293   PMID:24813850   PMID:24952961   PMID:25087120   PMID:25342470   PMID:25500368  
PMID:25501600   PMID:25725104   PMID:25746012   PMID:25963626   PMID:26238491   PMID:26582200   PMID:26798068   PMID:27106802   PMID:27267061   PMID:27523270   PMID:27619661   PMID:27819682  
PMID:28052242   PMID:28218919   PMID:28850249   PMID:29099934   PMID:29107687   PMID:29191940   PMID:29596938   PMID:30185824   PMID:31132747   PMID:31149635   PMID:31387178   PMID:31511692  
PMID:31519887   PMID:31723262   PMID:32103006   PMID:32193329   PMID:32968282   PMID:33238518   PMID:33269646   PMID:33354276   PMID:34238932   PMID:34545139  


Genomics

Comparative Map Data
Cflar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,750,353 - 58,798,043 (+)NCBIGRCm39mm39
GRCm39 Ensembl158,750,667 - 58,798,043 (+)Ensembl
GRCm38158,711,311 - 58,758,884 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,711,508 - 58,758,884 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,770,130 - 58,815,728 (+)NCBIGRCm37mm9NCBIm37
MGSCv36158,657,840 - 58,699,711 (+)NCBImm8
Celera159,232,248 - 59,277,933 (+)NCBICelera
Cytogenetic Map1C1.3NCBI
cM Map129.16NCBI
CFLAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2201,116,154 - 201,176,687 (+)EnsemblGRCh38hg38GRCh38
GRCh382201,116,164 - 201,176,687 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372201,980,887 - 202,041,410 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362201,689,135 - 201,737,260 (+)NCBINCBI36hg18NCBI36
Build 342201,806,395 - 201,854,507NCBI
Celera2195,735,441 - 195,783,644 (+)NCBI
Cytogenetic Map2q33.1NCBI
HuRef2193,832,403 - 193,888,781 (+)NCBIHuRef
CHM1_12201,986,842 - 202,043,389 (+)NCBICHM1_1
Cflar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2960,185,338 - 60,236,173 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl960,185,452 - 60,237,034 (+)Ensembl
Rnor_6.0965,534,608 - 65,586,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl965,534,704 - 65,587,251 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0965,342,359 - 65,390,152 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4957,309,836 - 57,356,635 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1957,475,312 - 57,481,853 (+)NCBI
Celera957,626,739 - 57,673,502 (+)NCBICelera
Cytogenetic Map9q31NCBI
Cflar
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955403412,632 - 434,741 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955403415,092 - 442,214 (-)NCBIChiLan1.0ChiLan1.0
CFLAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B206,528,943 - 206,585,848 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B206,528,943 - 206,577,045 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B88,373,057 - 88,429,959 (+)NCBIMhudiblu_PPA_v0panPan3
CFLAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13710,268,407 - 10,307,803 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3710,268,582 - 10,345,095 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3711,153,354 - 11,191,827 (+)NCBI
ROS_Cfam_1.03710,173,456 - 10,212,316 (+)NCBI
UMICH_Zoey_3.13710,154,909 - 10,193,670 (+)NCBI
UNSW_CanFamBas_1.03710,133,242 - 10,172,157 (+)NCBI
UU_Cfam_GSD_1.03710,126,854 - 10,165,741 (+)NCBI
Cflar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303158,411,636 - 158,453,829 (+)NCBI
SpeTri2.0NW_004936726381,888 - 425,565 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFLAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15104,781,615 - 104,844,921 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115104,780,744 - 104,835,631 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215116,105,245 - 116,184,924 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFLAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11086,768,252 - 86,819,963 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1086,782,240 - 86,816,652 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040112,604,271 - 112,651,003 (-)NCBIVero_WHO_p1.0
Cflar
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462488976,760 - 108,619 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AI646576  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38158,713,704 - 58,713,841UniSTSGRCm38
MGSCv37158,770,548 - 58,770,685UniSTSGRCm37
Celera159,232,666 - 59,232,803UniSTS
Cytogenetic Map1C1.3UniSTS
Whitehead/MRC_RH1856.64UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
PMC305633P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38339,358,385 - 39,358,820UniSTSGRCm38
MGSCv37339,257,307 - 39,257,742UniSTSGRCm37
Celera339,206,216 - 39,206,651UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map1C1.3UniSTS
AU021929  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38158,758,851 - 58,759,060UniSTSGRCm38
MGSCv37158,815,695 - 58,815,904UniSTSGRCm37
Celera159,277,900 - 59,278,109UniSTS
Cytogenetic Map1C1.3UniSTS
Whitehead/MRC_RH1859.01UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15857254792572799Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14590759679907723Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14289887276899008Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15857254792572799Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15668776390687918Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14681553180815680Mouse
1301954Lrnx11_mlearning-contextual 11 (mouse)Not determined13909372774477206Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14884984782850051Mouse
1558855Eae30_mexperimental allergic encephalomyelitis susceptibility 30 (mouse)Not determined14537861372935898Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4222050876220508Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14885318682853326Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15668776390687918Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13472105773937756Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15795281891952921Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13472105773937756Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15795281891952921Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15622705590227201Mouse
1357506W10q6_mweight 10 weeks QTL 6 (mouse)Not determined13472105773937756Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139093727126517573Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15593578989935898Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357759W3q12_mweight 3 weeks QTL 12 (mouse)Not determined13472105773937756Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5138244685382446Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14884984782850051Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14681553180815680Mouse
1357822Lvrq3_mliver weight QTL 3 (mouse)Not determined13472105773937756Mouse
1357824Estoq4_membryo survival total QTL 4 (mouse)Not determined13472105773937756Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15795281891952921Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14123396575234112Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12307051073937756Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14731073581310854Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
4142307Shali1_msurvival time to hyperoxic acute lung injury 1 (mouse)Not determined5192486670367430Mouse
4141724Idd5.1_minsulin dependent diabetes susceptibility 5.1 (mouse)Not determined5768911762907723Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15085105784851057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15622705590227201Mouse
12910786Pwgrq10_mpost-weaning growth rate QTL 10 (mouse)14082884867231097Mouse
12910780Pwgrq11_mpost-weaning growth rate QTL 11 (mouse)14082884867231097Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14123624075236240Mouse
12879917Shm3_msperm head morphology 3 (mouse)14414774462907723Mouse
12910788Pwgrq9_mpost-weaning growth rate QTL 9 (mouse)14082884867231097Mouse
39128207Lwq16_mliver weight QTL 16 (mouse)13472105773937756Mouse
14747009Manh49_mmandible shape 49 (mouse)15790219291902192Mouse
12880409V125Dq1_mvitamin D active form serum level QTL 1 (mouse)12600000060000000Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12551111062907723Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15790219291902192Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3242
Count of miRNA genes:932
Interacting mature miRNAs:1310
Transcripts:ENSMUST00000069333, ENSMUST00000097722, ENSMUST00000097723, ENSMUST00000114309, ENSMUST00000114313, ENSMUST00000123032, ENSMUST00000123553, ENSMUST00000124567, ENSMUST00000140940, ENSMUST00000149874, ENSMUST00000156870, ENSMUST00000164900
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001293805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_207653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB615039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB856464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE944648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX524743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB777849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB777865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U97076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y14041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y14042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000069333   ⟹   ENSMUSP00000065107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,752,476 - 58,794,324 (+)Ensembl
GRCm38.p6 Ensembl158,713,317 - 58,755,165 (+)Ensembl
RefSeq Acc Id: ENSMUST00000097722   ⟹   ENSMUSP00000095329
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,750,710 - 58,793,135 (+)Ensembl
GRCm38.p6 Ensembl158,711,551 - 58,753,976 (+)Ensembl
RefSeq Acc Id: ENSMUST00000097723
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,750,703 - 58,756,713 (+)Ensembl
GRCm38.p6 Ensembl158,711,544 - 58,717,554 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114309   ⟹   ENSMUSP00000109948
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,752,453 - 58,772,386 (+)Ensembl
GRCm38.p6 Ensembl158,713,294 - 58,733,227 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114313   ⟹   ENSMUSP00000109952
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,750,719 - 58,798,043 (+)Ensembl
GRCm38.p6 Ensembl158,711,560 - 58,758,884 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123032
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,769,711 - 58,791,612 (+)Ensembl
GRCm38.p6 Ensembl158,730,552 - 58,752,453 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123553
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,752,461 - 58,762,229 (+)Ensembl
GRCm38.p6 Ensembl158,713,302 - 58,723,070 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124567
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,750,693 - 58,753,048 (+)Ensembl
GRCm38.p6 Ensembl158,711,534 - 58,713,889 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140940
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,750,667 - 58,793,500 (+)Ensembl
GRCm38.p6 Ensembl158,711,508 - 58,754,341 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,750,667 - 58,753,045 (+)Ensembl
GRCm38.p6 Ensembl158,711,508 - 58,713,886 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156870
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,750,675 - 58,753,462 (+)Ensembl
GRCm38.p6 Ensembl158,711,516 - 58,714,303 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,750,669 - 58,770,405 (+)Ensembl
GRCm38.p6 Ensembl158,711,510 - 58,731,246 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189858
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,753,045 - 58,756,721 (+)Ensembl
GRCm38.p6 Ensembl158,713,886 - 58,717,562 (+)Ensembl
RefSeq Acc Id: NM_001289704   ⟹   NP_001276633
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,650 - 58,798,043 (+)NCBI
GRCm38158,711,491 - 58,758,884 (+)NCBI
Celera159,230,444 - 59,278,258 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001293804   ⟹   NP_001280733
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,650 - 58,798,043 (+)NCBI
GRCm38158,711,491 - 58,758,884 (+)NCBI
Celera159,230,444 - 59,278,258 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001293805   ⟹   NP_001280734
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,769,711 - 58,798,043 (+)NCBI
GRCm38158,730,552 - 58,758,884 (+)NCBI
Celera159,230,444 - 59,278,258 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001355056   ⟹   NP_001341985
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,752,445 - 58,798,043 (+)NCBI
GRCm38158,713,286 - 58,758,884 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009805   ⟹   NP_033935
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,752,445 - 58,772,386 (+)NCBI
GRCm38158,713,286 - 58,733,227 (+)NCBI
MGSCv37158,770,130 - 58,815,728 (+)RGD
Celera159,230,444 - 59,278,258 (+)NCBI
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_207653   ⟹   NP_997536
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,752,445 - 58,798,043 (+)NCBI
GRCm38158,713,286 - 58,758,884 (+)NCBI
MGSCv37158,770,130 - 58,815,728 (+)RGD
Celera159,230,444 - 59,278,258 (+)NCBI
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_149255
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,752,445 - 58,772,386 (+)NCBI
GRCm38158,713,286 - 58,733,227 (+)NCBI
Sequence:
RefSeq Acc Id: NR_149256
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,650 - 58,753,462 (+)NCBI
GRCm38158,711,491 - 58,714,303 (+)NCBI
Sequence:
RefSeq Acc Id: NR_149257
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,650 - 58,753,048 (+)NCBI
GRCm38158,711,491 - 58,713,889 (+)NCBI
Sequence:
RefSeq Acc Id: NR_149258
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,650 - 58,753,048 (+)NCBI
GRCm38158,711,491 - 58,713,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495635   ⟹   XP_006495698
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,752,342 - 58,798,043 (+)NCBI
GRCm38158,713,180 - 58,758,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238420   ⟹   XP_011236722
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,476 - 58,798,043 (+)NCBI
GRCm38158,711,311 - 58,758,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238421   ⟹   XP_011236723
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,353 - 58,798,043 (+)NCBI
GRCm38158,711,311 - 58,758,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238422   ⟹   XP_011236724
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,758 - 58,798,043 (+)NCBI
GRCm38158,711,599 - 58,758,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238423   ⟹   XP_011236725
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,751,338 - 58,798,043 (+)NCBI
GRCm38158,712,171 - 58,758,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244988   ⟹   XP_030100848
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,750,476 - 58,798,043 (+)NCBI
GRCm38158,713,180 - 58,758,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156889   ⟹   XP_036012782
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,752,344 - 58,798,043 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001276633 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280733 (Get FASTA)   NCBI Sequence Viewer  
  NP_001280734 (Get FASTA)   NCBI Sequence Viewer  
  NP_001341985 (Get FASTA)   NCBI Sequence Viewer  
  NP_033935 (Get FASTA)   NCBI Sequence Viewer  
  NP_997536 (Get FASTA)   NCBI Sequence Viewer  
  XP_006495698 (Get FASTA)   NCBI Sequence Viewer  
  XP_011236722 (Get FASTA)   NCBI Sequence Viewer  
  XP_011236723 (Get FASTA)   NCBI Sequence Viewer  
  XP_011236724 (Get FASTA)   NCBI Sequence Viewer  
  XP_011236725 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100848 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012782 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC53281 (Get FASTA)   NCBI Sequence Viewer  
  AAH29223 (Get FASTA)   NCBI Sequence Viewer  
  AAH85105 (Get FASTA)   NCBI Sequence Viewer  
  BAE25546 (Get FASTA)   NCBI Sequence Viewer  
  BAE36245 (Get FASTA)   NCBI Sequence Viewer  
  CAA74368 (Get FASTA)   NCBI Sequence Viewer  
  CAA74369 (Get FASTA)   NCBI Sequence Viewer  
  CAW32368 (Get FASTA)   NCBI Sequence Viewer  
  CAW32382 (Get FASTA)   NCBI Sequence Viewer  
  EDL00095 (Get FASTA)   NCBI Sequence Viewer  
  EDL00096 (Get FASTA)   NCBI Sequence Viewer  
  EDL00097 (Get FASTA)   NCBI Sequence Viewer  
  EDL00098 (Get FASTA)   NCBI Sequence Viewer  
  O35732 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_997536   ⟸   NM_207653
- Peptide Label: isoform 1
- UniProtKB: O35732 (UniProtKB/Swiss-Prot),   Q812G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_033935   ⟸   NM_009805
- Peptide Label: isoform 2
- UniProtKB: Q5U4G3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495698   ⟸   XM_006495635
- Peptide Label: isoform X1
- UniProtKB: O35732 (UniProtKB/Swiss-Prot),   Q812G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280733   ⟸   NM_001293804
- Peptide Label: isoform 4
- Sequence:
RefSeq Acc Id: NP_001276633   ⟸   NM_001289704
- Peptide Label: isoform 1
- UniProtKB: O35732 (UniProtKB/Swiss-Prot),   Q812G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280734   ⟸   NM_001293805
- Peptide Label: isoform 4
- Sequence:
RefSeq Acc Id: XP_011236722   ⟸   XM_011238420
- Peptide Label: isoform X1
- UniProtKB: O35732 (UniProtKB/Swiss-Prot),   Q812G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011236723   ⟸   XM_011238421
- Peptide Label: isoform X1
- UniProtKB: O35732 (UniProtKB/Swiss-Prot),   Q812G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011236724   ⟸   XM_011238422
- Peptide Label: isoform X1
- UniProtKB: O35732 (UniProtKB/Swiss-Prot),   Q812G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011236725   ⟸   XM_011238423
- Peptide Label: isoform X1
- UniProtKB: O35732 (UniProtKB/Swiss-Prot),   Q812G4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030100848   ⟸   XM_030244988
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001341985   ⟸   NM_001355056
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000065107   ⟸   ENSMUST00000069333
RefSeq Acc Id: ENSMUSP00000109948   ⟸   ENSMUST00000114309
RefSeq Acc Id: ENSMUSP00000109952   ⟸   ENSMUST00000114313
RefSeq Acc Id: ENSMUSP00000095329   ⟸   ENSMUST00000097722
RefSeq Acc Id: XP_036012782   ⟸   XM_036156889
- Peptide Label: isoform X2
Protein Domains
CASPASE_P20   DED

Promoters
RGD ID:6873810
Promoter ID:EPDNEW_M356
Type:initiation region
Name:Cflar_2
Description:Mus musculus CASP8 and FADD-like apoptosis regulator , transcriptvariant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M358  EPDNEW_M357  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,711,495 - 58,711,555EPDNEW
RGD ID:6873824
Promoter ID:EPDNEW_M357
Type:initiation region
Name:Cflar_1
Description:Mus musculus CASP8 and FADD-like apoptosis regulator , transcriptvariant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M356  EPDNEW_M358  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,713,294 - 58,713,354EPDNEW
RGD ID:6873814
Promoter ID:EPDNEW_M358
Type:initiation region
Name:Cflar_3
Description:Mus musculus CASP8 and FADD-like apoptosis regulator , transcriptvariant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M356  EPDNEW_M357  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,726,172 - 58,726,232EPDNEW
RGD ID:6817196
Promoter ID:MM_KWN:842
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000097722,   ENSMUST00000097723,   OTTMUST00000046771,   OTTMUST00000046772,   UC007BCN.1,   UC007BCO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,768,006 - 58,768,737 (+)MPROMDB
RGD ID:6817509
Promoter ID:MM_KWN:843
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_009805,   NM_207653,   UC007BCR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,769,136 - 58,770,517 (+)MPROMDB
RGD ID:6846585
Promoter ID:MM_ACW:955
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   MEF_B6
Transcripts:CFLAR.LSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,782,671 - 58,783,217 (+)MPROMDB
RGD ID:6817508
Promoter ID:MM_KWN:844
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:OTTMUST00000046773
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36158,786,666 - 58,787,817 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1336166 AgrOrtholog
Ensembl Genes ENSMUSG00000026031 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000065107 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000095329 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109948 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109952 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000069333 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000097722 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000114309 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000114313 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000124567 ENTREZGENE
  ENSMUST00000149874 ENTREZGENE
  ENSMUST00000156870 ENTREZGENE
Gene3D-CATH 1.10.533.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Caspase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DED_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C14_p20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C14A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12633 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1336166 ENTREZGENE
NCBI Gene 12633 ENTREZGENE
PANTHER PTHR10454 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cflar PhenoGen
PROSITE CASPASE_P20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CASc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52129 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2C9F2D9_MOUSE UniProtKB/TrEMBL
  CFLAR_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TTS9_MOUSE UniProtKB/TrEMBL
  Q5U4G3 ENTREZGENE, UniProtKB/TrEMBL
  Q812G4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D3Z0W6 UniProtKB/Swiss-Prot
  O35707 UniProtKB/Swiss-Prot
  O35733 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-31 Cflar  CASP8 and FADD-like apoptosis regulator  AU021929  expressed sequence AU021929  Data Merged 737654 PROVISIONAL