Foxf1 (forkhead box F1) - Rat Genome Database

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Gene: Foxf1 (forkhead box F1) Mus musculus
Analyze
Symbol: Foxf1
Name: forkhead box F1
RGD ID: 1616863
MGI Page MGI
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including mesenchyme morphogenesis; regulation of transcription by RNA polymerase II; and respiratory system development. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; extraembryonic component; and genitourinary system. Used to study persistent fetal circulation syndrome. Human ortholog(s) of this gene implicated in persistent fetal circulation syndrome. Orthologous to human FOXF1 (forkhead box F1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI450827; forkhead box F1a; forkhead box protein F1; forkhead-related protein FKHL5; forkhead-related transcription factor 1; Foxf; Foxf1a; FREA; Freac; Freac-1; FREAC1; hepatocyte nuclear factor 3 forkhead homolog 8; HFH-8; Hfh8; HNF-3/forkhead homolog 8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398121,811,100 - 121,814,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8121,811,125 - 121,814,883 (+)EnsemblGRCm39 Ensembl
GRCm388121,084,386 - 121,088,154 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,084,386 - 121,088,144 (+)EnsemblGRCm38mm10GRCm38
MGSCv378123,608,374 - 123,610,779 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368123,970,451 - 123,972,856 (+)NCBIMGSCv36mm8
Celera8125,302,426 - 125,304,831 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ morphogenesis  (IBA,IMP)
blood vessel development  (ISO)
cardiac left ventricle morphogenesis  (ISO)
cell-cell adhesion  (IMP)
cellular response to cytokine stimulus  (IDA)
cellular response to organic cyclic compound  (IMP)
detection of wounding  (IMP)
determination of left/right symmetry  (IMP)
digestive tract development  (ISO)
ductus arteriosus closure  (ISO)
embryonic digestive tract development  (IGI)
embryonic digestive tract morphogenesis  (ISO)
embryonic ectodermal digestive tract morphogenesis  (ISO)
embryonic foregut morphogenesis  (IMP)
endocardial cushion development  (ISO)
epithelial cell differentiation involved in mammary gland alveolus development  (IGI)
epithelial tube branching involved in lung morphogenesis  (IMP)
establishment of epithelial cell apical/basal polarity  (IGI)
extracellular matrix organization  (IGI)
heart development  (ISO)
in utero embryonic development  (IMP,ISO)
lateral mesodermal cell differentiation  (IMP)
lung alveolus development  (IMP)
lung development  (IMP,ISO)
lung lobe morphogenesis  (IMP)
lung morphogenesis  (IMP)
lung vasculature development  (ISO)
mesenchyme migration  (IMP)
mesoderm development  (IGI,IMP)
mesodermal cell differentiation  (IGI,IMP)
midgut development  (ISO)
morphogenesis of a branching structure  (ISO)
negative regulation of inflammatory response  (IMP)
negative regulation of mast cell degranulation  (IMP)
negative regulation of transcription by RNA polymerase II  (IMP)
pancreas development  (ISO)
positive regulation of cell migration  (IMP)
positive regulation of cell-substrate adhesion  (IMP)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of mesenchymal cell proliferation  (IMP)
positive regulation of transcription by RNA polymerase II  (IDA,IMP,ISO)
regulation of DNA-templated transcription  (IEA)
regulation of transcription by RNA polymerase II  (IBA)
respiratory tube development  (ISO)
right lung morphogenesis  (IMP)
smooth muscle cell differentiation  (IGI,IMP)
smoothened signaling pathway  (IDA)
somitogenesis  (IMP)
trachea development  (IMP,ISO)
ureter development  (ISO)
vasculogenesis  (IMP)
venous blood vessel development  (ISO)

Cellular Component
nucleoplasm  (TAS)
nucleus  (IBA,IDA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal allantois morphology  (IAGP)
abnormal amnion morphology  (IAGP)
abnormal developmental patterning  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal esophageal smooth muscle morphology  (IAGP)
abnormal extraembryonic mesoderm development  (IAGP)
abnormal extraembryonic tissue morphology  (IAGP)
abnormal gallbladder morphology  (IAGP)
abnormal hindgut morphology  (IAGP)
abnormal intestinal smooth muscle morphology  (IAGP)
abnormal lateral plate mesoderm morphology  (IAGP)
abnormal lung bud morphology  (IAGP)
abnormal lung development  (IAGP)
abnormal lung morphology  (IAGP)
abnormal lung saccule morphology  (IAGP)
abnormal lung vasculature morphology  (IAGP)
abnormal posterior primitive streak morphology  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal pulmonary artery morphology  (IAGP)
abnormal pulmonary vein morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal surfactant secretion  (IAGP)
abnormal vascular branching morphogenesis  (IAGP)
abnormal visceral yolk sac mesenchyme morphology  (IAGP)
abnormal visceral yolk sac morphology  (IAGP)
absent gallbladder  (IAGP)
absent midgut  (IAGP)
absent vitelline blood vessels  (IAGP)
decreased angiogenesis  (IAGP)
decreased lung endothelial cell proliferation  (IAGP)
decreased vascular endothelial cell number  (IAGP)
delayed somite formation  (IAGP)
dilated esophagus  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
failure of chorioallantoic fusion  (IAGP)
failure of initiation of embryo turning  (IAGP)
fused right lung lobes  (IAGP)
impaired contractility of intestinal smooth muscle  (IAGP)
impaired lung alveolus development  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
lethality, incomplete penetrance  (IAGP)
lung hemorrhage  (IAGP)
lung inflammation  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
pulmonary hypoplasia  (IAGP)
respiratory distress  (IAGP)
small allantois  (IAGP)
small lung  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7683413   PMID:7789972   PMID:7957066   PMID:7958446   PMID:8626802   PMID:9486531   PMID:10349636   PMID:10822266   PMID:11042159   PMID:11076861   PMID:11124112   PMID:11217851  
PMID:11290504   PMID:11313147   PMID:11437453   PMID:11493558   PMID:11804790   PMID:11809759   PMID:11943666   PMID:12003781   PMID:12361961   PMID:12466851   PMID:12477932   PMID:12500195  
PMID:12711542   PMID:12812790   PMID:14607778   PMID:14681479   PMID:14745957   PMID:15107405   PMID:15136151   PMID:15196959   PMID:15618518   PMID:15809042   PMID:15817462   PMID:15987774  
PMID:16141072   PMID:16141073   PMID:16144835   PMID:16439479   PMID:16691571   PMID:16916379   PMID:16943278   PMID:16989802   PMID:17261592   PMID:17496152   PMID:17881493   PMID:17962963  
PMID:18287559   PMID:18324732   PMID:18421012   PMID:18483557   PMID:18990706   PMID:19000842   PMID:19020777   PMID:19049965   PMID:19304890   PMID:19877281   PMID:19879143   PMID:20097443  
PMID:20233876   PMID:21267068   PMID:21331042   PMID:21558373   PMID:21873635   PMID:21905163   PMID:22627279   PMID:22678773   PMID:22711520   PMID:23023706   PMID:23063659   PMID:23369715  
PMID:23376422   PMID:23884445   PMID:23946491   PMID:23975021   PMID:24393341   PMID:24633704   PMID:24722050   PMID:24790087   PMID:24939938   PMID:24952961   PMID:25091710   PMID:25356765  
PMID:25619889   PMID:25631042   PMID:25986147   PMID:26238476   PMID:26294094   PMID:26329601   PMID:26625197   PMID:26745863   PMID:26930384   PMID:27072135   PMID:27095594   PMID:27165781  
PMID:27166834   PMID:27180663   PMID:27320915   PMID:27425595   PMID:27638768   PMID:27736991   PMID:28069742   PMID:28286175   PMID:28501478   PMID:28506991   PMID:28797033   PMID:28878348  
PMID:28939119   PMID:29412136   PMID:29642003   PMID:30153454   PMID:30352852   PMID:30478225   PMID:30565344   PMID:30638444   PMID:30670377   PMID:30728831   PMID:30916783   PMID:31199666  
PMID:31323030   PMID:31486675   PMID:32616504   PMID:32855415   PMID:32855417   PMID:32968282   PMID:33328171   PMID:33898467   PMID:33951437   PMID:34033822   PMID:34256037   PMID:34546975  
PMID:34671097   PMID:35020897   PMID:35103284   PMID:35145123   PMID:35440116   PMID:35905011   PMID:35974052   PMID:36094016   PMID:36196625   PMID:36227576   PMID:36542853   PMID:37052590  
PMID:37524711   PMID:37989727   PMID:38589650   PMID:38608444   PMID:38898031   PMID:39001875   PMID:39029571   PMID:39052671  


Genomics

Comparative Map Data
Foxf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398121,811,100 - 121,814,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8121,811,125 - 121,814,883 (+)EnsemblGRCm39 Ensembl
GRCm388121,084,386 - 121,088,154 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,084,386 - 121,088,144 (+)EnsemblGRCm38mm10GRCm38
MGSCv378123,608,374 - 123,610,779 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368123,970,451 - 123,972,856 (+)NCBIMGSCv36mm8
Celera8125,302,426 - 125,304,831 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.31NCBI
FOXF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381686,510,527 - 86,515,422 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1686,510,527 - 86,515,422 (+)EnsemblGRCh38hg38GRCh38
GRCh371686,544,133 - 86,549,028 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361685,101,634 - 85,105,571 (+)NCBINCBI36Build 36hg18NCBI36
Build 341685,101,658 - 85,105,548NCBI
Celera1670,844,972 - 70,848,909 (+)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1672,283,842 - 72,287,779 (+)NCBIHuRef
CHM1_11687,955,849 - 87,959,786 (+)NCBICHM1_1
T2T-CHM13v2.01692,578,744 - 92,583,639 (+)NCBIT2T-CHM13v2.0
Foxf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,062,635 - 66,066,427 (+)NCBIGRCr8
mRatBN7.21949,153,949 - 49,157,741 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,153,699 - 49,157,738 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1955,945,226 - 55,949,016 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01956,628,949 - 56,632,741 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01958,843,413 - 58,847,205 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01953,012,306 - 53,016,100 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,012,332 - 53,016,086 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01963,756,636 - 63,760,430 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1948,400,056 - 48,404,066 (+)NCBICelera
Cytogenetic Map19q12NCBI
Foxf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555411,317,114 - 1,346,590 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555411,341,715 - 1,345,397 (+)NCBIChiLan1.0ChiLan1.0
FOXF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21896,269,228 - 96,274,680 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116102,186,430 - 102,190,920 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01667,183,416 - 67,188,211 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11686,515,150 - 86,519,949 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1686,516,119 - 86,519,949 (+)Ensemblpanpan1.1panPan2
FOXF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1566,343,776 - 66,347,785 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl566,345,150 - 66,347,935 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha566,355,810 - 66,359,808 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0566,565,325 - 66,569,328 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl566,566,196 - 66,569,484 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1566,588,163 - 66,592,141 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0566,423,363 - 66,427,352 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0566,836,698 - 66,840,702 (-)NCBIUU_Cfam_GSD_1.0
Foxf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244082614 - 1,756 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049438834 - 1,756 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl62,592,993 - 2,597,659 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.162,579,348 - 2,598,122 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.262,799,092 - 2,801,627 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FOXF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1571,898,473 - 71,902,624 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl571,898,786 - 71,903,661 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660473,803,343 - 3,807,492 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247462,599,106 - 2,603,336 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247462,599,211 - 2,603,031 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Foxf1
189 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:709
Count of miRNA genes:412
Interacting mature miRNAs:497
Transcripts:ENSMUST00000050684, ENSMUST00000181504
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
12904960Gmmq6_mgastrocnemius muscle mass QTL 6 (mouse)8111481497130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
10412274Leci1_mleukocyte endothelial cell interactions 1 (mouse)Not determined8110415083130127694Mouse
26884375Skwq2_mskull length QTL 2, 5 week (mouse)8120726739130027694Mouse
12904938Edlmmq7_mextensor digitorum longus muscle mass QTL 7 (mouse)8111481497130127694Mouse
10412273Fcd1_mfunctional capillary density 1 (mouse)Not determined8110415083130127694Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
4141546Mrdq3_mmodifier of retinal degeneration QTL 3 (mouse)Not determined114439420126055880Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse

Markers in Region
UniSTS:236022  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388121,087,024 - 121,087,246UniSTSGRCm38
MGSCv378123,610,924 - 123,611,146UniSTSGRCm37
Celera8125,304,976 - 125,305,198UniSTS
Cytogenetic Map8E1UniSTS
cM Map867.0UniSTS
AI450827  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388121,087,989 - 121,088,088UniSTSGRCm38
MGSCv378123,611,889 - 123,611,988UniSTSGRCm37
Celera8125,305,941 - 125,306,040UniSTS
Cytogenetic Map8E1UniSTS
cM Map867.0UniSTS
Whitehead/MRC_RH81416.7UniSTS
Foxf1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388121,084,757 - 121,085,199UniSTSGRCm38
MGSCv378123,608,657 - 123,609,099UniSTSGRCm37
Celera8125,302,709 - 125,303,151UniSTS
Cytogenetic Map8E1UniSTS
cM Map870.31UniSTS
cM Map867.0UniSTS
Foxf1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388121,085,174 - 121,085,356UniSTSGRCm38
Celera8125,303,126 - 125,303,308UniSTS
Cytogenetic Map8E1UniSTS
Foxf1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000181504   ⟹   ENSMUSP00000137662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8121,811,125 - 121,814,883 (+)Ensembl
GRCm38.p6 Ensembl8121,084,386 - 121,088,144 (+)Ensembl
RefSeq Acc Id: NM_010426   ⟹   NP_034556
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398121,811,100 - 121,814,883 (+)NCBI
GRCm388121,084,386 - 121,088,154 (+)NCBI
MGSCv378123,608,374 - 123,610,779 (+)RGD
Celera8125,302,338 - 125,306,106 (+)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_034556   ⟸   NM_010426
- UniProtKB: B2RSC1 (UniProtKB/Swiss-Prot),   Q61661 (UniProtKB/Swiss-Prot),   Q61080 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000137662   ⟸   ENSMUST00000181504

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61080-F1-model_v2 AlphaFold Q61080 1-378 view protein structure

Promoters
RGD ID:8668475
Promoter ID:EPDNEW_M12268
Type:multiple initiation site
Name:Foxf1_1
Description:Mus musculus forkhead box F1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388121,084,361 - 121,084,421EPDNEW
RGD ID:6843193
Promoter ID:MM_KWN:55955
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:NM_010426
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368123,607,496 - 123,608,747 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347470 AgrOrtholog
Ensembl Genes ENSMUSG00000042812 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000181504 ENTREZGENE
  ENSMUST00000181504.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
InterPro Fork_head_dom UniProtKB/Swiss-Prot
  Forkhead_box_regulator UniProtKB/Swiss-Prot
  TF_fork_head_CS_1 UniProtKB/Swiss-Prot
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report mmu:15227 UniProtKB/Swiss-Prot
MGD MGI:1347470 ENTREZGENE
NCBI Gene 15227 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN BINIOU UniProtKB/Swiss-Prot
  FORKHEAD BOX PROTEIN F1 UniProtKB/Swiss-Prot
Pfam Forkhead UniProtKB/Swiss-Prot
PhenoGen Foxf1 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot
PROSITE FORK_HEAD_1 UniProtKB/Swiss-Prot
  FORK_HEAD_2 UniProtKB/Swiss-Prot
  FORK_HEAD_3 UniProtKB/Swiss-Prot
SMART SM00339 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
UniProt B2RSC1 ENTREZGENE
  FOXF1_MOUSE UniProtKB/Swiss-Prot
  Q3U0R0_MOUSE UniProtKB/TrEMBL
  Q61080 ENTREZGENE
  Q61661 ENTREZGENE
UniProt Secondary B2RSC1 UniProtKB/Swiss-Prot
  Q61661 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-26 Foxf1  forkhead box F1  Foxf1a  forkhead box F1a  Symbol and/or name change 5135510 APPROVED