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Gene: Hapln2 (hyaluronan and proteoglycan link protein 2) Mus musculus

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Symbol:

Hapln2

Name:

hyaluronan and proteoglycan link protein 2

RGD ID:

736584

MGI Page

MGI

Description:

Predicted to enable hyaluronic acid binding activity. Acts upstream of or within establishment of blood-nerve barrier and extracellular matrix assembly. Located in extracellular matrix and node of Ranvier. Is expressed in brain. Orthologous to human HAPLN2 (hyaluronan and proteoglycan link protein 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

4930401E20Rik; Br; brain link protein 1; Bral1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	87,927,865 - 87,934,818 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	87,929,057 - 87,934,890 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	88,020,558 - 88,027,511 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	88,021,750 - 88,027,583 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	87,825,672 - 87,831,433 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	88,107,990 - 88,113,367 (-)	NCBI		MGSCv36	mm8
Celera	3	88,060,940 - 88,066,702 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	38.78	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hapln2	Mouse	Charcot-Marie-Tooth disease type 2		ISO	HAPLN2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2	ClinVar	PMID:18585512 more ...
Hapln2	Mouse	Craniosynostosis Syndrome, Autosomal Recessive		ISO	HAPLN2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Craniosynostosis syndrome	ClinVar	PMID:25741868
Hapln2	Mouse	gastrointestinal stromal tumor		ISO	HAPLN2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Hapln2	Mouse	immunodeficiency 42		ISO	HAPLN2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiency	ClinVar	PMID:28492532
Hapln2	Mouse	MHC class II deficiency		ISO	HAPLN2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: MHC class II deficiency	ClinVar	PMID:28492532
Hapln2	Mouse	parathyroid carcinoma		ISO	HAPLN2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
Hapln2	Mouse	severe congenital neutropenia 3		ISO	HAPLN2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Kostmann syndrome	ClinVar	PMID:28492532
Hapln2	Mouse	severe congenital neutropenia 5		ISO	HAPLN2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndrome	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hapln2	Mouse	17alpha-ethynylestradiol	multiple interactions	EXP		6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of HAPLN2 mRNA	CTD	PMID:17942748
Hapln2	Mouse	17beta-estradiol	multiple interactions	ISO	Hapln2 (Rattus norvegicus)	6480464	[Testosterone co-treated with Estradiol] results in increased expression of HAPLN2 mRNA	CTD	PMID:32741896
Hapln2	Mouse	2,2',4,4'-Tetrabromodiphenyl ether	increases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	2 more ...	CTD	PMID:21394737
Hapln2	Mouse	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	EXP		6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of HAPLN2 mRNA and Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to HAPLN2 promoter]	CTD	PMID:17942748 and PMID:19654925
Hapln2	Mouse	4,4'-diaminodiphenylmethane	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	4 and 4'-diaminodiphenylmethane results in decreased expression of HAPLN2 mRNA	CTD	PMID:30723492
Hapln2	Mouse	4,4'-sulfonyldiphenol	decreases expression	ISO	HAPLN2 (Homo sapiens)	6480464	bisphenol S results in decreased expression of HAPLN2 mRNA	CTD	PMID:33476716
Hapln2	Mouse	4-hydroxyphenyl retinamide	decreases expression	EXP		6480464	Fenretinide results in decreased expression of HAPLN2 mRNA	CTD	PMID:28973697
Hapln2	Mouse	5-fluorouracil	affects expression	ISO	HAPLN2 (Homo sapiens)	6480464	Fluorouracil affects the expression of HAPLN2 mRNA	CTD	PMID:16584549
Hapln2	Mouse	6-propyl-2-thiouracil	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	Propylthiouracil results in decreased expression of HAPLN2 mRNA	CTD	PMID:24780913 and PMID:25825206
Hapln2	Mouse	ammonium chloride	affects expression	ISO	Hapln2 (Rattus norvegicus)	6480464	Ammonium Chloride affects the expression of HAPLN2 mRNA	CTD	PMID:16483693
Hapln2	Mouse	arsane	affects expression	ISO	HAPLN2 (Homo sapiens)	6480464	Arsenic affects the expression of HAPLN2 mRNA	CTD	PMID:18414638
Hapln2	Mouse	arsane	affects methylation	ISO	HAPLN2 (Homo sapiens)	6480464	Arsenic affects the methylation of HAPLN2 gene	CTD	PMID:25304211
Hapln2	Mouse	arsenic atom	affects expression	ISO	HAPLN2 (Homo sapiens)	6480464	Arsenic affects the expression of HAPLN2 mRNA	CTD	PMID:18414638
Hapln2	Mouse	arsenic atom	affects methylation	ISO	HAPLN2 (Homo sapiens)	6480464	Arsenic affects the methylation of HAPLN2 gene	CTD	PMID:25304211
Hapln2	Mouse	benzo[a]pyrene	decreases expression	ISO	HAPLN2 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of HAPLN2 mRNA	CTD	PMID:22316170
Hapln2	Mouse	benzo[a]pyrene	increases methylation	ISO	HAPLN2 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of HAPLN2 3' UTR	CTD	PMID:27901495
Hapln2	Mouse	benzo[a]pyrene	affects methylation	ISO	HAPLN2 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of HAPLN2 5' UTR	CTD	PMID:27901495
Hapln2	Mouse	bisphenol A	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of HAPLN2 mRNA	CTD	PMID:25181051 and PMID:30816183
Hapln2	Mouse	bisphenol F	increases expression	EXP		6480464	bisphenol F results in increased expression of HAPLN2 mRNA	CTD	PMID:36706583
Hapln2	Mouse	cadmium dichloride	decreases expression	ISO	HAPLN2 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of HAPLN2 mRNA	CTD	PMID:38382870
Hapln2	Mouse	choline	multiple interactions	EXP		6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of HAPLN2 gene	CTD	PMID:20938992
Hapln2	Mouse	Cuprizon	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	Cuprizone results in decreased expression of HAPLN2 mRNA	CTD	PMID:26577399 and PMID:27523638
Hapln2	Mouse	dimethylarsinic acid	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	Cacodylic Acid results in decreased expression of HAPLN2 mRNA	CTD	PMID:16122865
Hapln2	Mouse	endosulfan	increases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	Endosulfan results in increased expression of HAPLN2 mRNA	CTD	PMID:29391264
Hapln2	Mouse	ethanol	affects expression	EXP		6480464	Ethanol affects the expression of HAPLN2 mRNA	CTD	PMID:30319688
Hapln2	Mouse	fipronil	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	fipronil results in decreased expression of HAPLN2 mRNA	CTD	PMID:23962444
Hapln2	Mouse	fluoxetine	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	Fluoxetine results in decreased expression of HAPLN2 mRNA	CTD	PMID:17033635
Hapln2	Mouse	folic acid	multiple interactions	EXP		6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of HAPLN2 gene	CTD	PMID:20938992
Hapln2	Mouse	fulvestrant	decreases methylation	ISO	HAPLN2 (Homo sapiens)	6480464	Fulvestrant results in decreased methylation of HAPLN2 gene	CTD	PMID:31601247
Hapln2	Mouse	genistein	decreases expression	EXP		6480464	Genistein results in decreased expression of HAPLN2 mRNA	CTD	PMID:32186404
Hapln2	Mouse	glyphosate	increases expression	EXP		6480464	Glyphosate results in increased expression of HAPLN2 mRNA	CTD	PMID:35897073
Hapln2	Mouse	L-methionine	multiple interactions	EXP		6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in decreased methylation of HAPLN2 gene	CTD	PMID:20938992
Hapln2	Mouse	lead diacetate	multiple interactions	EXP		6480464	[lead acetate results in increased abundance of Lead] which results in increased expression of HAPLN2 mRNA	CTD	PMID:32458983
Hapln2	Mouse	lead(0)	affects expression	ISO	HAPLN2 (Homo sapiens)	6480464	Lead affects the expression of HAPLN2 mRNA	CTD	PMID:28903495
Hapln2	Mouse	lead(0)	multiple interactions	EXP		6480464	[lead acetate results in increased abundance of Lead] which results in increased expression of HAPLN2 mRNA	CTD	PMID:32458983
Hapln2	Mouse	Licochalcone B	increases expression	ISO	HAPLN2 (Homo sapiens)	6480464	licochalcone B results in increased expression of HAPLN2 mRNA	CTD	PMID:33647349
Hapln2	Mouse	methotrexate	affects expression	EXP		6480464	Methotrexate affects the expression of HAPLN2 mRNA	CTD	PMID:18502557
Hapln2	Mouse	Muraglitazar	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	muraglitazar results in decreased expression of HAPLN2 mRNA	CTD	PMID:21515302
Hapln2	Mouse	paracetamol	decreases expression	ISO	HAPLN2 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of HAPLN2 mRNA	CTD	PMID:22230336
Hapln2	Mouse	paracetamol	increases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	Acetaminophen results in increased expression of HAPLN2 mRNA	CTD	PMID:33387578
Hapln2	Mouse	potassium dichromate	increases expression	EXP		6480464	Potassium Dichromate results in increased expression of HAPLN2 mRNA	CTD	PMID:23608068
Hapln2	Mouse	resveratrol	multiple interactions	ISO	HAPLN2 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of HAPLN2 mRNA	CTD	PMID:23557933
Hapln2	Mouse	sotorasib	multiple interactions	ISO	HAPLN2 (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of HAPLN2 mRNA	CTD	PMID:36139627
Hapln2	Mouse	Tesaglitazar	decreases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	tesaglitazar results in decreased expression of HAPLN2 mRNA	CTD	PMID:21515302
Hapln2	Mouse	testosterone	multiple interactions	ISO	Hapln2 (Rattus norvegicus)	6480464	[Testosterone co-treated with Estradiol] results in increased expression of HAPLN2 mRNA	CTD	PMID:32741896
Hapln2	Mouse	thioacetamide	increases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	Thioacetamide results in increased expression of HAPLN2 mRNA	CTD	PMID:34492290
Hapln2	Mouse	titanium dioxide	affects methylation	EXP		6480464	titanium dioxide affects the methylation of HAPLN2 gene	CTD	PMID:35295148
Hapln2	Mouse	trametinib	multiple interactions	ISO	HAPLN2 (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of HAPLN2 mRNA	CTD	PMID:36139627
Hapln2	Mouse	triclosan	decreases expression	ISO	HAPLN2 (Homo sapiens)	6480464	Triclosan results in decreased expression of HAPLN2 mRNA	CTD	PMID:30510588
Hapln2	Mouse	triptonide	increases expression	EXP		6480464	triptonide results in increased expression of HAPLN2 mRNA	CTD	PMID:33045310
Hapln2	Mouse	troglitazone	increases expression	ISO	Hapln2 (Rattus norvegicus)	6480464	troglitazone results in increased expression of HAPLN2 mRNA	CTD	PMID:21515302

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hapln2	Mouse	cell adhesion	involved_in	IEA	InterPro:IPR000538	2290270		InterPro	GO_REF:0000002
Hapln2	Mouse	central nervous system development	involved_in	IBA	PANTHER:PTN000515588 more ...	2290270		GO_Central	GO_REF:0000033
Hapln2	Mouse	establishment of blood-nerve barrier	acts_upstream_of_or_within	IMP	MGI:4437572	2290270	PMID:20181608	MGI	PMID:20181608
Hapln2	Mouse	extracellular matrix assembly	acts_upstream_of_or_within	IMP	MGI:4437572	2290270	PMID:20181608	MGI	PMID:20181608
Hapln2	Mouse	skeletal system development	involved_in	IBA	PANTHER:PTN000515588 more ...	2290270		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hapln2	Mouse	extracellular matrix	located_in	IDA		2290270	PMID:11817897 and PMID:20181608	MGI	PMID:11817897 and PMID:20181608
Hapln2	Mouse	extracellular region	located_in	IEA	UniProtKB-KW:KW-0964	2290270		UniProt	GO_REF:0000043
Hapln2	Mouse	extracellular space	is_active_in	IBA	PANTHER:PTN008374273 more ...	2290270		GO_Central	GO_REF:0000033
Hapln2	Mouse	node of Ranvier	located_in	IDA		2290270	PMID:20181608	MGI	PMID:20181608
Hapln2	Mouse	perineuronal net	is_active_in	IBA	PANTHER:PTN008374273 more ...	2290270		GO_Central	GO_REF:0000033
Hapln2	Mouse	synapse	is_active_in	IBA	PANTHER:PTN008374273 more ...	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hapln2	Mouse	hyaluronic acid binding	enables	IEA	UniProtKB-KW:KW-0373	2290270		UniProt	GO_REF:0000043
Hapln2	Mouse	protein binding	enables	ISO	UniProtKB:A6NEM1 more ...	9068941	PMID:32296183	IntAct	PMID:32296183

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hapln2	Mouse	abnormal axon morphology		IAGP		5509061		MGI	PMID:20181608
Hapln2	Mouse	abnormal nervous system physiology		IAGP		5509061		MGI	PMID:20181608
Hapln2	Mouse	abnormal visual evoked potential		IAGP		5509061		MGI	PMID:20181608

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	Bral1, a brain-specific link protein, colocalizing with the versican V2 isoform at the nodes of Ranvier in developing and adult mouse central nervous systems.	Oohashi T, etal., Mol Cell Neurosci 2002 Jan;19(1):43-57.
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:10349636	PMID:11027579	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12663660	PMID:14550776	PMID:14610273	PMID:14706451	PMID:16141072	PMID:16141073
PMID:16537572	PMID:20181608	PMID:21267068	PMID:21677750	PMID:21873635	PMID:23664614	PMID:30125937	PMID:37142655

Hapln2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	87,927,865 - 87,934,818 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	87,929,057 - 87,934,890 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	88,020,558 - 88,027,511 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	88,021,750 - 88,027,583 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	87,825,672 - 87,831,433 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	88,107,990 - 88,113,367 (-)	NCBI		MGSCv36	mm8
Celera	3	88,060,940 - 88,066,702 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	38.78	NCBI

HAPLN2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	156,601,504 - 156,625,725 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	156,619,331 - 156,625,725 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	156,589,207 - 156,595,517 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	154,855,710 - 154,862,141 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	153,402,158 - 153,408,590	NCBI
Celera	1	129,659,883 - 129,666,327 (+)	NCBI		Celera
Cytogenetic Map	1	q23.1	NCBI
HuRef	1	127,946,689 - 127,953,128 (+)	NCBI		HuRef
CHM1_1	1	157,985,292 - 157,991,726 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	155,737,884 - 155,762,124 (+)	NCBI		T2T-CHM13v2.0

Hapln2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	175,786,767 - 175,794,515 (-)	NCBI		GRCr8
mRatBN7.2	2	173,488,909 - 173,496,824 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	173,491,160 - 173,496,588 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	180,635,725 - 180,641,144 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	178,658,084 - 178,663,504 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	173,258,563 - 173,263,995 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	187,395,104 - 187,402,076 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	187,396,349 - 187,401,786 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	206,798,121 - 206,804,794 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	180,104,684 - 180,110,113 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	180,054,791 - 180,060,219 (-)	NCBI
Celera	2	167,438,414 - 167,443,845 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Hapln2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	2,709,013 - 2,710,588 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	2,705,903 - 2,710,763 (+)	NCBI	ChiLan1.0	ChiLan1.0

HAPLN2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	93,217,263 - 93,225,333 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	92,951,764 - 92,959,848 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	131,962,801 - 131,969,331 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	135,785,754 - 135,792,652 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	135,785,754 - 135,792,652 (+)	Ensembl	panpan1.1		panPan2

HAPLN2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	41,340,493 - 41,346,607 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	41,341,883 - 41,344,117 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	40,827,781 - 40,833,885 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	41,203,438 - 41,209,543 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	41,204,835 - 41,209,776 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	40,987,110 - 40,991,416 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	41,038,338 - 41,044,441 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	41,322,006 - 41,328,109 (-)	NCBI		UU_Cfam_GSD_1.0

Hapln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	26,761,897 - 26,777,432 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936580	5,792,421 - 5,811,096 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HAPLN2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	93,462,308 - 93,467,802 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	93,462,306 - 93,468,394 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	102,125,801 - 102,128,123 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HAPLN2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	7,237,940 - 7,244,840 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	7,238,281 - 7,240,183 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	6,533,760 - 6,540,524 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hapln2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	1,798,904 - 1,805,318 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	1,799,303 - 1,805,977 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Hapln2
424 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	662
Count of miRNA genes:	432
Interacting mature miRNAs:	500
Transcripts:	ENSMUST00000005014, ENSMUST00000160150, ENSMUST00000160737, ENSMUST00000162352
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142399	Aec1_m	autoimmune exocrinopathy 1 (mouse)			Not determined			7586174	102690034	Mouse
26884378	Skwq6_m	skull length QTL 6, 10 week (mouse)					3	51907421	102307316	Mouse
1301971	Cia5_m	collagen induced arthritis QTL 5 (mouse)			Not determined		3	66046658	100046795	Mouse
1301392	Eae3_m	susceptibility to experimental allergic encephalomyelitis 3 (mouse)			Not determined		3	79548730	113548837	Mouse
1301904	Iba2_m	induction of brown adipocytes 2 (mouse)			Not determined		3	82147043	116147184	Mouse
26884382	Bzwq1_m	bi-zygomatic width QTL 1, 5 week (mouse)					3	52207421	137205761	Mouse
11041900	Lmr11a_m	leishmaniasis resistance 11a (mouse)					3	83463991	117464137	Mouse
26884380	Skwq1_m	skull length QTL 1, 5 week (mouse)					3	43954435	101607316	Mouse
14746984	Manh54_m	mandible shape 54 (mouse)					3	85289152	119289152	Mouse
12738440	Twq3_m	testis weight QTL 3 (mouse)					3	87228015	121228015	Mouse
25314313	Syncl1_m	synaptonemal complex length 1 (mouse)					3	67907333	128393649	Mouse
1301272	Cfsw1_m	cystic fibrosis survival to weaning 1 (mouse)			Not determined		3	83882912	117883044	Mouse
1301791	Char4_m	P. chabaudi malaria resistance QTL 4 (mouse)			Not determined		3	69625509	100655290	Mouse
11049572	Lmr11c_m	leishmaniasis resistance 11c (mouse)					3	72139967	106140094	Mouse
26884436	Zlq3_m	zygomatic length QTL 3, 10 week (mouse)					3	3265060	142405761	Mouse
26884427	Cvht4_m	cranial vault height 4, 10 week (mouse)					3	16054164	109707316	Mouse
4141294	Bmd24_m	bone mineral density 24 (mouse)			Not determined		3	61740061	95740241	Mouse
10043981	Cia5a_m	collagen induced arthritis QTL 5a (mouse)			Not determined		3	87170454	89140094	Mouse
1301705	Sles3_m	systemic lupus erythmatosus suppressor 3 (mouse)			Not determined		3	37174862	143353183	Mouse
13207570	Tcq12_m	total cholesterol QTL 12 (mouse)					3	16504164	130163649	Mouse
1357583	Sle18_m	systematic lupus erythematosus susceptibility 18 (mouse)			Not determined		3	87208904	125316236	Mouse
26884422	Cvht7_m	cranial vault height 7, 16 week (mouse)					3	28954149	118893649	Mouse
1300595	Tmevd2_m	Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)			Not determined		3	75463302	109463549	Mouse
11251721	Ewc3_m	ethanol withdrawal and consumption 3 (mouse)					3	69568554	103568554	Mouse
1300982	Lmr11_m	leishmaniasis resistance 11 (mouse)			Not determined		3	72139967	106140094	Mouse
12880419	V125Dq4_m	vitamin D active form serum level QTL 4 (mouse)					3	58907307	92907307	Mouse
1301947	Pcfm3_m	periosteal circumference and femur length 3 (mouse)			Not determined		3	81084652	115084797	Mouse
4142099	Cq3_m	cholesterol QTL 3 (mouse)			Not determined		3	84888918	118889067	Mouse
11039512	Ltpr3b_m	Leishmania tropica response 3b (mouse)					3	83463991	117464137	Mouse
11039519	Ltpr3_m	Leishmania tropica response 3 (mouse)					3	56704102	100464137	Mouse
1302056	Orgwq4_m	organ weight QTL 4 (mouse)			Not determined		3	30067588	147304689	Mouse
11039507	Ltpr3g_m	Leishmania tropica response 3g (mouse)					3	83463991	117464137	Mouse
11039508	Ltpr3f_m	Leishmania tropica response 3f (mouse)					3	83463991	117464137	Mouse
1301422	Sle11_m	systematic lupus erythematosus susceptibility 11 (mouse)			Not determined		3	70208904	104209042	Mouse
11039509	Ltpr3e_m	Leishmania tropica response 3e (mouse)					3	83463991	117464137	Mouse
11039510	Ltpr3d_m	Leishmania tropica response 3d (mouse)					3	83463991	117464137	Mouse
13208566	Bmiq5_m	body mass index QTL 5 (mouse)					3	40954435	115793649	Mouse
11039511	Ltpr3c_m	Leishmania tropica response 3c (mouse)					3	83463991	117464137	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_022031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006502148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB049055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC158233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK015034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK081264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC023911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC138584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC138585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE651789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY122070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000005014 ⟹ ENSMUSP00000005014

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	87,929,368 - 87,934,785 (-)	Ensembl
GRCm38.p6 Ensembl	3	88,022,061 - 88,027,478 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000160150 ⟹ ENSMUSP00000125271

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	87,930,841 - 87,934,799 (-)	Ensembl
GRCm38.p6 Ensembl	3	88,023,534 - 88,027,492 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000160737

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	87,929,057 - 87,934,890 (-)	Ensembl
GRCm38.p6 Ensembl	3	88,021,750 - 88,027,583 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000162352

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	3	87,929,945 - 87,930,980 (-)	Ensembl
GRCm38.p6 Ensembl	3	88,022,638 - 88,023,673 (-)	Ensembl

RefSeq Acc Id:

NM_022031 ⟹ NP_071314

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	87,929,057 - 87,934,818 (-)	NCBI
GRCm38	3	88,021,750 - 88,027,511 (-)	NCBI
MGSCv37	3	87,825,672 - 87,831,433 (-)	RGD
Celera	3	88,060,940 - 88,066,702 (-)	RGD
cM Map	3		ENTREZGENE

Sequence:

show sequence

AGAAAAGAAAAGGACAGACAGACAGAAAGGGTCAGGGTCCTGAAGCAGCCAGACATCCTGAAAATCTGACTCCCATCTTGACAGCCTCTTCTGAAAGGCCATATATAGCCTGGCACAGAGGGCACAGG
ACAGGAAGCTGCTGAGCACAGCTCGATTTGCCTCTGAGGAGAGATCATCTTGCAGTACTAGGGAGTGCCCACCACCTGTGCCCTGCAGACGGTGCTTGCTGACACCATCATGCCAAGCAGGATCCCTC
TCCCTGCGTTCTGCTGCTTCCTTCTCCCCTGGGCCTTCACCAGCTTTCACAAAGCCCTGGGGAATCCGGCCCCCCATCCGGGTCCCCACTACCTCCTGCCCCCCATCCACGAGGTCATTCACTCTCGT
CGTGGGGCCACGGCCACACTGCCCTGCGTCCTGGGCACCTCGCCTCCCAGCTACAAAGTACGCTGGAGCAAAGTGGAGCCCGGTGAGCTGCGGGAAACGCTAATCCTCATTACCAACGGACTGCACGC
CCGGGACTACGGGCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGCATCGGCTGGACGCCTCCCTGATCATCAAGAACGTGCGTCTGGAGGATGAGGGTCGGTACCGCTGCGAGCTCATCAATGGCA
TTGAGGACGAGAGCGTGGCACTGACCCTGCGCCTGGAGGGTGTGGTGTTTCCGTACCAACCCAGCCGAGGCCGCTACCAGTTCAATTACTTCGAAGCGAAGCGGGCGTGTGAAGAGCAGGACGGACGC
CTGGCCACTTACGGCCAACTCTACCAGGCGTGGACCGAGGGGCTGGACTGGTGCAACGCCGGCTGGTTGCTCGAGGGCTCCGTGCGTTACCCTGTGCTCACCGCGCGGGCTCCGTGCGGCGGCCACGG
GCGGCCAGGCATCCGCAGCTACGGGCCCCGCGACCGCAGCCGCGACCGCTATGACGCCTTCTGCTTCACCTCGGCCCTGGCAGGCCAGGTGTTCTTCGTGCCGGGGCGGCTGACGCTGTCAGAAGCCC
ACGCGGCTTGCCGGAGGCGCGGAGCCGTAGTAGCCAAGGTCGGGCACCTCTACGCCGCCTGGAAGTTCTCCGGCCTGGATCAATGCGACGGAGGCTGGCTGGCGGACGGCAGCGTTCGCTTCCCCATC
ACGACGCCGCGGCCGCGCTGTGGGGGTCTCCCTGACCCAGGGGTGCGCAGCTTCGGCTTCCCCCGACCCCAGCAGGCGTCCTACGGGACCTACTGCTATGCCGAGAAGTAGGAGTGCGACAGAGTGGC
GGGTCCCCTCTGGACAGACTAAGGCCCAGCCCTCACTTCTGCCTTCCCCAGGCCAGCGCGGTGCTTCGGGCTGCTGGGCAAAGGGGCGTCCCGGGCATTAACTGACCAATAAAATAACATGGCACCTT
CTTTGTTCCATAAGAACAAACATATATTGCATCTATGGCTCAGCAATATACTGGGTTTGTGATTAGAGAGCACCCACAGCACGAAGGACAGAGGAGAGGAAGGAGGAGAGGAAGTCTCAGCAGACCTG
GCCATCTACACGGGAGAATACAGGCTGCCCTTTATGTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTCCAGGAACTCCAAACTTCCAGAGCTGTCTGGGCCCTACAAAACAAATATTCAAAC
TAAACTCATTTCTAAATGTACTTATCACTTCCAAGGTCTGTTTTATTTAGTTTATTAATTTTATTTATTTATTTTGAGACAAGGCCTCTCAATTTTTCCTTGACTGTCCTGGAACTTCCACTGTGGAC
TAGGCTGGCCTTGAATTCACACACATCAGCCTCCCTCTACCTCCTAAGTTCTGGGATCACATCTGGCTAAAGTCTACAATGAAAGACGGTAAATTCCGTGTGGACTGAGAACTCAGCAGCTAAGCTAA
CTTGATGCTCTTTCAGAGGACGAGGACCCACAATCATCTGTAACTCCAGTTCCAGGGAATCCAACAACCTCTTCTGACCCCCACAGGCACCAGGCAGGCACACTGTGAGCTTGTCTACTATAATAAAT
CCACTTG

hide sequence

RefSeq Acc Id:

XM_006502148 ⟹ XP_006502211

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	3	87,927,865 - 87,934,602 (-)	NCBI
GRCm38	3	88,020,558 - 88,027,298 (-)	NCBI

Sequence:

show sequence

CCCCGCTCCTCCTGGTCCAGCACCCTTGTACTTACAATTGGTCTGTCCCACCCCTGGTCTAAGG
ACAGAAGTAGCAAGGCCCGCTCTCCACACTCTTTTAGGACAGGAAGCTGCTGAGCACAGCTCGATTTGCCTCTGAGGAGAGATCATCTTGCAGTACTAGGGAGTGCCCACCACCTGTGCCCTGCAGAC
GGTGCTTGCTGACACCATCATGCCAAGCAGGATCCCTCTCCCTGCGTTCTGCTGCTTCCTTCTCCCCTGGGCCTTCACCAGCTTTCACAAAGCCCTGGGGAATCCGGCCCCCCATCCGGGTCCCCACT
ACCTCCTGCCCCCCATCCACGAGGTCATTCACTCTCGTCGTGGGGCCACGGCCACACTGCCCTGCGTCCTGGGCACCTCGCCTCCCAGCTACAAAGTACGCTGGAGCAAAGTGGAGCCCGGTGAGCTG
CGGGAAACGCTAATCCTCATTACCAACGGACTGCACGCCCGGGACTACGGGCTCCTGGGAGGGCGCGCCAGCTTGCGGAGAGGGCATCGGCTGGACGCCTCCCTGATCATCAAGAACGTGCGTCTGGA
GGATGAGGGTCGGTACCGCTGCGAGCTCATCAATGGCATTGAGGACGAGAGCGTGGCACTGACCCTGCGCCTGGAGGGTGTGGTGTTTCCGTACCAACCCAGCCGAGGCCGCTACCAGTTCAATTACT
TCGAAGCGAAGCGGGCGTGTGAAGAGCAGGACGGACGCCTGGCCACTTACGGCCAACTCTACCAGGCGTGGACCGAGGGGCTGGACTGGTGCAACGCCGGCTGGTTGCTCGAGGGCTCCGTGCGTTAC
CCTGTGCTCACCGCGCGGGCTCCGTGCGGCGGCCACGGGCGGCCAGGCATCCGCAGCTACGGGCCCCGCGACCGCAGCCGCGACCGCTATGACGCCTTCTGCTTCACCTCGGCCCTGGCAGGCCAGGT
GTTCTTCGTGCCGGGGCGGCTGACGCTGTCAGAAGCCCACGCGGCTTGCCGGAGGCGCGGAGCCGTAGTAGCCAAGGTCGGGCACCTCTACGCCGCCTGGAAGTTCTCCGGCCTGGATCAATGCGACG
GAGGCTGGCTGGCGGACGGCAGCGTTCGCTTCCCCATCACGACGCCGCGGCCGCGCTGTGGGGGTCTCCCTGACCCAGGGGTGCGCAGCTTCGGCTTCCCCCGACCCCAGCAGGCGTCCTACGGGACC
TACTGCTATGCCGAGAAGTAGGAGTGCGACAGAGTGGCGGGTCCCCTCTGGACAGACTAAGGCCCAGCCCTCACTTCTGCCTTCCCCAGGCCAGCGCGGTGCTTCGGGCTGCTGGGCAAAGGGGCGTC
CCGGGCATTAACTGACCAATAAAATAACATGGCACCTTCTTTGTTCCATAAGAACAAACATATATTGCATCTATGGCTCAGCAATATACTGGGTTTGTGATTAGAGAGCACCCACAGCACGAAGGACA
GAGGAGAGGAAGGAGGAGAGGAAGTCTCAGCAGACCTGGCCATCTACACGGGAGAATACAGGCTGCCCTTTATGTCTAACCAGTCACTCAAAGGTTTCTTATTCAAAATTTCCAGGAACTCCAAACTT
CCAGAGCTGTCTGGGCCCTACAAAACAAATATTCAAACTAAACTCATTTCTAAATGTACTTATCACTTCCAAGGTCTGTTTTATTTAGTTTATTAATTTTATTTATTTATTTTGAGACAAGGCCTCTC
AATTTTTCCTTGACTGTCCTGGAACTTCCACTGTGGACTAGGCTGGCCTTGAATTCACACACATCAGCCTCCCTCTACCTCCTAAGTTCTGGGATCACATCTGGCTAAAGTCTACAATGAAAGACGGT
AAATTCCGTGTGGACTGAGAACTCAGCAGCTAAGCTAACTTGATGCTCTTTCAGAGGACGAGGACCCACAATCATCTGTAACTCCAGTTCCAGGGAATCCAACAACCTCTTCTGACCCCCACAGGCAC
CAGGCAGGCACACTGTGAGCTTGTCTACTATAATAAATCCACTTGAGAAAGATACAGACAACCATGCTGATAAAGACAACTAAAAGCAAATGAGTCCTTTATTTTTGGCTGTGATCAAGAGTGGCTCT
GAGCCTCTTGGTACCCTAAGCTCAGGGGTACCAAGATACAAACCACAGTTAAATCAATGTTAGATGAGAGTCAGAGGAAACTTGCAACATTTGTTTTTGGCAGAACGTAGTAGTTATTTCATGCATAA
CATAGCAATTATTTTTTACTTATACCTTCTAAACAATAATTATTTTGGTTAATGCATCTGGGCTATGCTCAGAGTCATGGAAGTCCCTGAAGTGTAGACTGTTCGGCGAAAGCAAGGGGTTGAGGAGT
ATCTAAGCAGACCAAAATGGAGTCCAGACAAGACAGTCTTGACATTTCACTCATCTACTTATTTAAGTTACTTTTAAATCATTGGTTTTTATGAGGAGTAACAATCAGTTAATTAACAATCAGTTCAT
TAGGCAGGGCCTGATCATTAGACCTAGGAGGACAAGGACAAACAGACCCCTGGACTGTGAATAAGGTCATTGACCATGGAGTCCAATGAAGCCAGCTACGGAAACAGCGACTTCTGGTTTATTTTTAT
TTATTATTTCTAAGGACCAATTGTTATTTGGTTTATAGTTAGGCCTTAATTATTGAAGAAATCAGGTAAAAAAAAATTAAACCTATTGTGTTTAGCTACAGCAGAGCTAATAAAATCTTGTCAGAGTC
CAGTCCCAGGGAGCTGTCCGGGTTACCCCTATAGGAAGCTTTGTGTCTGATGTTAGCATCAATCCAGAGGGAGAATGGAACATCACAATTCCCTGAAGAAATAAACCTCTGCCAGATCCCAACCAAGG
AGGTTTCGGTTGTCCTTAGACTTGCTGAGATCCTGACCCTGTGTTGACACCCCAGCCCCTCCCCCCAGCACTTTCACCTGACTCCATCACCCTCTATCACCTGCATCCTAAGAGCCAGGACAAAGCCT
TCCTAAAGCTGAAATGGCCTTGTCTAGACGAGCAACTCCAGGAAAGAGAGACTGCAGAGTGGCAGGTAGCCCCTGCAGCTACATTTAACGTCTCCATTTCCAAGCTCCCTATATAAACTCCGAGTGTT
CCCCCTCTTCAAAGGCACCCCCTTTCCCTCCGGAGAATGTCTGTCCATTGCTGTTTGAAATAAACAGTCTCTTCTGGCAAGGTCA

hide sequence


Protein RefSeqs	NP_071314	(Get FASTA)	NCBI Sequence Viewer
	XP_006502211	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI38585	(Get FASTA)	NCBI Sequence Viewer
	AAI38586	(Get FASTA)	NCBI Sequence Viewer
	BAB17663	(Get FASTA)	NCBI Sequence Viewer
	EDL15321	(Get FASTA)	NCBI Sequence Viewer
	EDL15322	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000005014
	ENSMUSP00000005014.3
GenBank Protein	Q9ESM3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_071314 ⟸ NM_022031
- Peptide Label:	precursor
- UniProtKB:	Q9ESM3 (UniProtKB/Swiss-Prot), B2RRU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPSRIPLPAFCCFLLPWAFTSFHKALGNPAPHPGPHYLLPPIHEVIHSRRGATATLPCVLGTSPPSYKVRWSKVEPGELRETLILITNGLHARDYGLLGGRASLRRGHRLDASLIIKNVRLEDEGRYR CELINGIEDESVALTLRLEGVVFPYQPSRGRYQFNYFEAKRACEEQDGRLATYGQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGHGRPGIRSYGPRDRSRDRYDAFCFTSALAGQVFFVPGR LTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQQASYGTYCYAEK hide sequence

RefSeq Acc Id:	XP_006502211 ⟸ XM_006502148
- Peptide Label:	isoform X1
- UniProtKB:	Q9ESM3 (UniProtKB/Swiss-Prot), B2RRU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPSRIPLPAFCCFLLPWAFTSFHKALGNPAPHPGPHYLLPPIHEVIHSRRGATATLPCVLGTSPPSYKVRWSKVEPGELRETLILITNGLHARDYGLLGGRASLRRGHRLDASLIIKNVRLEDEGRYR CELINGIEDESVALTLRLEGVVFPYQPSRGRYQFNYFEAKRACEEQDGRLATYGQLYQAWTEGLDWCNAGWLLEGSVRYPVLTARAPCGGHGRPGIRSYGPRDRSRDRYDAFCFTSALAGQVFFVPGR LTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLPDPGVRSFGFPRPQQASYGTYCYAEK hide sequence

Ensembl Acc Id:

ENSMUSP00000125271 ⟸ ENSMUST00000160150

Ensembl Acc Id:

ENSMUSP00000005014 ⟸ ENSMUST00000005014

Protein Domains

Ig-like Ig-like V-type Link

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ESM3-F1-model_v2	AlphaFold	Q9ESM3	1-341	view protein structure

RGD ID:

6833938

Promoter ID:

MM_KWN:34813

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, Kidney

Transcripts:

OTTMUST00000067278

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	3	87,827,116 - 87,827,682 (-)	MPROMDB

RGD ID:

6881086

Promoter ID:

EPDNEW_M3994

Type:

multiple initiation site

Name:

Hapln2_1

Description:

Mus musculus hyaluronan and proteoglycan link protein 2 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	3	88,027,488 - 88,027,548	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000004894	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000005014	ENTREZGENE
	ENSMUST00000005014.9	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
	3.10.100.10	UniProtKB/Swiss-Prot
InterPro	C-type_lectin-like/link_sf	UniProtKB/Swiss-Prot
	CTDL_fold	UniProtKB/Swiss-Prot
	Hyaluronan_bind_Proteoglycan	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
	Ig_V-set	UniProtKB/Swiss-Prot
	Link_dom	UniProtKB/Swiss-Prot
KEGG Report	mmu:73940	UniProtKB/Swiss-Prot
MGD	MGI:2137300	ENTREZGENE
NCBI Gene	73940	ENTREZGENE
PANTHER	AGGRECAN/VERSICAN PROTEOGLYCAN	UniProtKB/Swiss-Prot
	HYALURONAN AND PROTEOGLYCAN LINK PROTEIN 2	UniProtKB/Swiss-Prot
Pfam	V-set	UniProtKB/Swiss-Prot
	Xlink	UniProtKB/Swiss-Prot
PhenoGen	Hapln2	PhenoGen
PRINTS	LINKMODULE	UniProtKB/Swiss-Prot
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
	LINK_1	UniProtKB/Swiss-Prot
	LINK_2	UniProtKB/Swiss-Prot
SMART	IGc2	UniProtKB/Swiss-Prot
	IGv	UniProtKB/Swiss-Prot
	LINK	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
	SSF56436	UniProtKB/Swiss-Prot
UniProt	B2RRU7	ENTREZGENE, UniProtKB/TrEMBL
	E0CXI3_MOUSE	UniProtKB/TrEMBL
	HPLN2_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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