Mfap4 (microfibrillar-associated protein 4) - Rat Genome Database

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Gene: Mfap4 (microfibrillar-associated protein 4) Mus musculus
Analyze
Symbol: Mfap4
Name: microfibrillar-associated protein 4
RGD ID: 1317271
MGI Page MGI
Description: Predicted to be an extracellular matrix structural constituent. Predicted to be involved in elastic fiber assembly; regulation of collagen metabolic process; and response to UV. Predicted to act upstream of or within cell adhesion. Located in collagen-containing extracellular matrix. Is expressed in brain; genitourinary system; heart and pericardium; and respiratory system mesenchyme. Orthologous to human MFAP4 (microfibril associated protein 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110007F23Rik; microfibril-associated glycoprotein 4; RP23-155J3.5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,376,257 - 61,379,536 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,376,257 - 61,379,726 (+)EnsemblGRCm39 Ensembl
GRCm381161,485,431 - 61,488,708 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,485,431 - 61,488,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,298,946 - 61,302,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,301,639 - 61,304,899 (+)NCBIMGSCv36mm8
MGSCv361161,915,401 - 61,918,679 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (EXP,ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
cantharidin  (EXP)
carbon nanotube  (EXP)
chlordecone  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt atom  (EXP)
Cuprizon  (ISO)
cytarabine  (ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
dextran sulfate  (EXP)
dibutyl phthalate  (ISO)
dichloroacetic acid  (EXP)
diethyl maleate  (ISO)
diethylstilbestrol  (ISO)
diiodine  (EXP)
dioxygen  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
folic acid  (EXP)
fructose  (EXP)
furan  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glucose  (EXP)
glyphosate  (EXP)
hydroquinone O-beta-D-glucopyranoside  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
isotretinoin  (ISO)
kojic acid  (ISO)
methamphetamine  (EXP)
methotrexate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (EXP)
perfluorooctanoic acid  (ISO)
phenformin  (ISO)
phenylephrine  (ISO)
pioglitazone  (EXP)
progesterone  (ISO)
rotenone  (ISO)
sarin  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetraphene  (EXP)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
XL147  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10049592   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15328023   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16944957   PMID:17273973   PMID:18287559   PMID:19334288   PMID:21267068   PMID:21386911   PMID:21440680   PMID:21873635   PMID:22159717   PMID:24006456  
PMID:24952961   PMID:26033354   PMID:26038533   PMID:26564819   PMID:26899386   PMID:27626380   PMID:27657450   PMID:27936003   PMID:30635555   PMID:30677223   PMID:31260032   PMID:31624071  
PMID:32580935   PMID:32856514   PMID:32905637   PMID:33530700   PMID:34050187   PMID:34321999   PMID:34805319   PMID:35103284   PMID:35364055  


Genomics

Comparative Map Data
Mfap4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,376,257 - 61,379,536 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,376,257 - 61,379,726 (+)EnsemblGRCm39 Ensembl
GRCm381161,485,431 - 61,488,708 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,485,431 - 61,488,900 (+)EnsemblGRCm38mm10GRCm38
MGSCv371161,298,946 - 61,302,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361161,301,639 - 61,304,899 (+)NCBIMGSCv36mm8
MGSCv361161,915,401 - 61,918,679 (+)NCBIMGSCv36mm8
Cytogenetic Map11B2NCBI
cM Map1137.96NCBI
MFAP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381719,383,445 - 19,387,190 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1719,383,442 - 19,387,190 (-)EnsemblGRCh38hg38GRCh38
GRCh371719,286,758 - 19,290,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361719,227,348 - 19,231,086 (-)NCBINCBI36Build 36hg18NCBI36
Build 341719,227,348 - 19,231,086NCBI
Celera1716,699,566 - 16,703,304 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1718,666,324 - 18,670,101 (-)NCBIHuRef
CHM1_11719,295,503 - 19,299,280 (-)NCBICHM1_1
T2T-CHM13v2.01719,331,480 - 19,335,225 (-)NCBIT2T-CHM13v2.0
Mfap4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81046,666,552 - 46,669,613 (+)NCBIGRCr8
mRatBN7.21046,167,158 - 46,170,176 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,167,217 - 46,170,155 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1050,870,472 - 50,873,434 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01050,360,995 - 50,363,957 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01045,864,422 - 45,867,384 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01047,765,463 - 47,768,484 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1047,765,432 - 47,768,483 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01047,537,965 - 47,540,978 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41047,646,157 - 47,649,095 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11047,659,771 - 47,662,910 (+)NCBI
Celera1045,418,983 - 45,421,921 (+)NCBICelera
Cytogenetic Map10q22NCBI
Mfap4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955467377,887 - 381,593 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955467378,389 - 381,593 (+)NCBIChiLan1.0ChiLan1.0
MFAP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21954,392,825 - 54,397,057 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11759,205,453 - 59,209,037 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01731,725,732 - 31,729,528 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11736,890,461 - 36,894,245 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1736,890,778 - 36,893,230 (+)Ensemblpanpan1.1panPan2
MFAP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1540,828,548 - 40,831,757 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl540,828,282 - 40,831,495 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha540,969,718 - 40,972,901 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0540,936,178 - 40,939,363 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl540,936,212 - 40,939,363 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1540,904,512 - 40,907,695 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0540,851,289 - 40,854,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0541,043,387 - 41,046,570 (+)NCBIUU_Cfam_GSD_1.0
Mfap4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560260,214,635 - 60,218,270 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936881368,877 - 373,974 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936881369,161 - 372,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MFAP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,137,566 - 60,144,207 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11260,141,488 - 60,144,214 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MFAP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,968,925 - 17,972,676 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1617,969,945 - 17,972,978 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660592,878,547 - 2,882,337 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mfap4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248495,661,920 - 5,664,970 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248495,661,916 - 5,665,290 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mfap4
112 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1038
Count of miRNA genes:563
Interacting mature miRNAs:684
Transcripts:ENSMUST00000040522, ENSMUST00000064783, ENSMUST00000126308, ENSMUST00000127073
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse

Markers in Region
Mapk7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381161,488,836 - 61,489,107UniSTSGRCm38
MGSCv371161,302,338 - 61,302,609UniSTSGRCm37
Cytogenetic Map11B2UniSTS
cM Map11 UniSTS
UniSTS:236597  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381161,488,440 - 61,488,647UniSTSGRCm38
MGSCv371161,301,942 - 61,302,149UniSTSGRCm37
Cytogenetic Map11B2UniSTS
cM Map1134.35UniSTS
AB019373  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381161,488,902 - 61,489,001UniSTSGRCm38
MGSCv371161,302,404 - 61,302,503UniSTSGRCm37
Cytogenetic Map11B2UniSTS
cM Map1134.35UniSTS
Whitehead/MRC_RH11824.44UniSTS
PMC324396P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381161,487,938 - 61,488,610UniSTSGRCm38
MGSCv371161,301,440 - 61,302,112UniSTSGRCm37
Cytogenetic Map11B2UniSTS
cM Map1134.35UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000040522   ⟹   ENSMUSP00000038971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,376,287 - 61,378,901 (+)Ensembl
GRCm38.p6 Ensembl1161,485,461 - 61,488,075 (+)Ensembl
RefSeq Acc Id: ENSMUST00000064783   ⟹   ENSMUSP00000070848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,376,257 - 61,379,726 (+)Ensembl
GRCm38.p6 Ensembl1161,485,431 - 61,488,900 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,376,342 - 61,379,726 (+)Ensembl
GRCm38.p6 Ensembl1161,485,516 - 61,488,900 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1161,376,317 - 61,377,778 (+)Ensembl
GRCm38.p6 Ensembl1161,485,491 - 61,486,952 (+)Ensembl
RefSeq Acc Id: NM_001347545   ⟹   NP_001334474
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,376,257 - 61,379,531 (+)NCBI
GRCm381161,485,431 - 61,488,705 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001361359   ⟹   NP_001348288
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,376,342 - 61,379,531 (+)NCBI
GRCm381161,485,516 - 61,488,705 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029568   ⟹   NP_083844
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,376,257 - 61,379,531 (+)NCBI
GRCm381161,485,431 - 61,488,705 (+)NCBI
MGSCv371161,298,946 - 61,302,206 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030246411   ⟹   XP_030102271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391161,376,269 - 61,379,536 (+)NCBI
GRCm381161,485,443 - 61,488,708 (+)NCBI
Sequence:
RefSeq Acc Id: NP_083844   ⟸   NM_029568
- Peptide Label: isoform 2 precursor
- UniProtKB: Q5NCN1 (UniProtKB/Swiss-Prot),   Q9D1H9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001334474   ⟸   NM_001347545
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9D1H9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030102271   ⟸   XM_030246411
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001348288   ⟸   NM_001361359
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000038971   ⟸   ENSMUST00000040522
RefSeq Acc Id: ENSMUSP00000070848   ⟸   ENSMUST00000064783
Protein Domains
Fibrinogen C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D1H9-F1-model_v2 AlphaFold Q9D1H9 1-257 view protein structure

Promoters
RGD ID:8674934
Promoter ID:EPDNEW_M15497
Type:multiple initiation site
Name:Mfap4_1
Description:Mus musculus microfibrillar-associated protein 4 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381161,485,447 - 61,485,507EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1342276 AgrOrtholog
Ensembl Genes ENSMUSG00000042436 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000040522 ENTREZGENE
  ENSMUST00000040522.7 UniProtKB/Swiss-Prot
  ENSMUST00000064783 ENTREZGENE
  ENSMUST00000064783.10 UniProtKB/Swiss-Prot
  ENSMUST00000126308 ENTREZGENE
Gene3D-CATH 3.90.215.10 UniProtKB/Swiss-Prot
InterPro Fibrinogen-like_C UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_C_1 UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_C_dom UniProtKB/Swiss-Prot
KEGG Report mmu:76293 UniProtKB/Swiss-Prot
MGD MGI:1342276 ENTREZGENE
NCBI Gene 76293 ENTREZGENE
PANTHER FIBRINOGEN/TENASCIN/ANGIOPOEITIN UniProtKB/Swiss-Prot
  MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 4 UniProtKB/Swiss-Prot
Pfam Fibrinogen_C UniProtKB/Swiss-Prot
PhenoGen Mfap4 PhenoGen
PROSITE FIBRINOGEN_C_2 UniProtKB/Swiss-Prot
SMART FBG UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56496 UniProtKB/Swiss-Prot
UniProt MFAP4_MOUSE UniProtKB/Swiss-Prot
  Q5NCN1 ENTREZGENE
  Q9D1H9 ENTREZGENE
UniProt Secondary Q5NCN1 UniProtKB/Swiss-Prot